Wall clock time and date at job start Mon Mar 30 2020 02:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99888 * 2 1 4 4 H 1.48502 * 109.46943 * 240.00274 * 3 2 1 5 5 H 1.48500 * 109.47365 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47104 * 120.00381 * 3 2 1 7 7 C 1.37878 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99505 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00255 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47001 * 180.02562 * 9 7 2 11 11 C 1.38288 * 119.92134 * 269.72273 * 10 9 7 12 12 C 1.38107 * 120.07582 * 180.28015 * 11 10 9 13 13 C 1.38910 * 119.92007 * 359.97438 * 12 11 10 14 14 N 1.39672 * 120.07095 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00361 * 0.02562 * 14 13 12 16 16 C 1.53001 * 109.47218 * 180.02562 * 15 14 13 17 17 H 1.08996 * 109.46249 * 65.00037 * 16 15 14 18 18 C 1.53041 * 109.45983 * 184.97957 * 16 15 14 19 19 C 1.53117 * 109.27753 * 179.20733 * 18 16 15 20 20 C 1.53116 * 109.14939 * 302.32792 * 19 18 16 21 21 C 1.53039 * 109.28072 * 57.66196 * 20 19 18 22 22 N 1.46840 * 109.46247 * 305.01706 * 16 15 14 23 23 C 1.38912 * 119.85498 * 0.02562 * 13 12 11 24 24 C 1.38099 * 119.92393 * 359.97438 * 23 13 12 25 25 H 0.97003 * 120.00083 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.46934 * 60.00090 * 9 7 2 27 27 H 1.09002 * 109.46712 * 300.00352 * 9 7 2 28 28 H 1.07997 * 119.96260 * 0.25959 * 11 10 9 29 29 H 1.07996 * 120.03861 * 179.97438 * 12 11 10 30 30 H 0.97003 * 120.00367 * 180.02562 * 14 13 12 31 31 H 1.08997 * 109.46888 * 300.00100 * 15 14 13 32 32 H 1.09000 * 109.47069 * 59.99640 * 15 14 13 33 33 H 1.09004 * 109.49846 * 299.13448 * 18 16 15 34 34 H 1.08993 * 109.50532 * 59.25069 * 18 16 15 35 35 H 1.08998 * 109.52356 * 182.43104 * 19 18 16 36 36 H 1.08999 * 109.58624 * 62.26044 * 19 18 16 37 37 H 1.09004 * 109.50540 * 297.71713 * 20 19 18 38 38 H 1.09008 * 109.50411 * 177.60192 * 20 19 18 39 39 H 1.09005 * 109.46189 * 180.80715 * 21 20 19 40 40 H 1.08992 * 109.45379 * 60.83075 * 21 20 19 41 41 H 1.00901 * 111.00434 * 302.34228 * 22 16 15 42 42 H 1.08001 * 120.03609 * 179.97438 * 23 13 12 43 43 H 1.07995 * 119.96616 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.6741 -4.1727 -1.1991 12 6 3.5671 -5.2262 -1.2028 13 6 4.0198 -5.7550 -0.0007 14 7 4.9225 -6.8208 -0.0007 15 6 5.3934 -7.3819 -1.2695 16 6 6.3657 -8.5297 -0.9899 17 1 5.8351 -9.3426 -0.4943 18 6 6.9524 -9.0340 -2.3104 19 6 7.9395 -10.1690 -2.0242 20 6 9.0314 -9.6589 -1.0798 21 6 8.3847 -9.1363 0.2050 22 7 7.4498 -8.0522 -0.1222 23 6 3.5719 -5.2221 1.2015 24 6 2.6790 -4.1687 1.1979 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5570 0.8897 28 1 2.3217 -3.7610 -2.1333 29 1 3.9130 -5.6384 -2.1391 30 1 5.2377 -7.1895 0.8393 31 1 4.5430 -7.7571 -1.8387 32 1 5.9012 -6.6067 -1.8434 33 1 6.1491 -9.4027 -2.9482 34 1 7.4716 -8.2180 -2.8131 35 1 8.3921 -10.5022 -2.9581 36 1 7.4135 -11.0015 -1.5569 37 1 9.5834 -8.8528 -1.5633 38 1 9.7137 -10.4740 -0.8383 39 1 9.1585 -8.7591 0.8737 40 1 7.8445 -9.9463 0.6949 41 1 7.9330 -7.2726 -0.5427 42 1 3.9217 -5.6313 2.1378 43 1 2.3306 -3.7537 2.1321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171333508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:33 Heat of formation + Delta-G solvation = 3.759986 kcal Electronic energy + Delta-G solvation = -20262.512015 eV Core-core repulsion = 17305.919953 eV Total energy + Delta-G solvation = -2956.592061 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.56870 -38.55182 -35.47811 -33.12279 -32.08317 -31.83022 -30.12145 -29.75428 -26.85989 -25.31132 -23.68346 -22.62911 -22.49106 -21.07832 -20.76500 -19.82593 -16.87903 -16.19769 -16.02963 -15.71812 -15.18119 -15.10103 -14.71346 -14.47516 -14.04420 -13.65670 -13.58144 -13.03889 -12.93150 -12.61650 -12.50125 -12.35507 -12.18062 -11.79212 -11.61798 -11.46354 -11.13599 -11.11163 -11.02943 -10.78559 -10.57278 -10.48291 -9.99990 -9.68988 -9.33510 -8.91187 -8.67307 -8.31841 -8.12556 -6.61735 -5.91681 -3.96288 2.23348 2.49189 3.38325 3.41809 3.45662 3.65819 3.96546 4.36085 4.43553 4.49575 4.56150 4.73066 4.78306 4.88496 4.97688 5.06739 5.28213 5.38037 5.40358 5.45336 5.53315 5.57784 5.61337 5.66214 5.67442 5.69773 5.75553 5.91760 6.15762 6.25861 6.43555 6.56026 6.69745 6.82781 6.98737 7.05928 7.40172 7.41013 7.56894 7.70209 8.00988 8.03725 8.06983 8.26187 8.47960 9.09495 9.66759 11.16278 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.035034 B = 0.002870 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.025954 B = 9753.320402 C = 9904.517842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.055 0.945 9 C 0.054 3.946 10 C -0.087 4.087 11 C -0.081 4.081 12 C -0.199 4.199 13 C 0.185 3.815 14 N -0.747 5.747 15 C 0.139 3.861 16 C 0.078 3.922 17 H 0.085 0.915 18 C -0.151 4.151 19 C -0.118 4.118 20 C -0.159 4.159 21 C 0.057 3.943 22 N -0.678 5.678 23 C -0.194 4.194 24 C -0.079 4.079 25 H 0.261 0.739 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.400 0.600 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.343 0.657 42 H 0.107 0.893 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.786 -20.941 -2.754 26.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.017 3.983 10 C -0.089 4.089 11 C -0.099 4.099 12 C -0.221 4.221 13 C 0.085 3.915 14 N -0.380 5.380 15 C 0.013 3.987 16 C -0.033 4.033 17 H 0.103 0.897 18 C -0.191 4.191 19 C -0.156 4.156 20 C -0.199 4.199 21 C -0.072 4.072 22 N -0.307 5.307 23 C -0.216 4.216 24 C -0.098 4.098 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.132 0.868 29 H 0.124 0.876 30 H 0.235 0.765 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.162 0.838 42 H 0.125 0.875 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.292 -20.929 -2.352 26.027 hybrid contribution 1.164 0.703 -0.669 1.516 sum 16.456 -20.226 -3.022 26.249 Atomic orbital electron populations 1.69955 1.05999 1.26690 1.51007 1.25021 0.94858 0.99143 0.95471 0.86634 0.79538 0.83050 0.78661 1.20266 1.21344 1.20236 1.21115 0.93026 0.90162 1.50255 0.92629 1.18229 0.92509 0.89705 0.97875 1.20421 0.99320 0.97333 0.91838 1.20824 0.96229 0.94773 0.98124 1.20483 1.04474 1.01731 0.95459 1.17630 0.91100 0.88922 0.93887 1.44251 1.49903 1.36783 1.07045 1.21168 0.95747 0.94222 0.87526 1.21804 0.92436 0.97177 0.91861 0.89709 1.22213 0.99545 0.98959 0.98369 1.21535 0.96647 0.97913 0.99514 1.22281 0.98359 1.01399 0.97839 1.22016 0.95057 0.94318 0.95841 1.60589 1.13328 1.09178 1.47615 1.20452 1.04225 1.01531 0.95437 1.20818 0.96125 0.94697 0.98167 0.92956 0.95772 0.95750 0.86830 0.87605 0.76452 0.92460 0.93060 0.91043 0.91606 0.91929 0.91843 0.91987 0.91543 0.90648 0.90986 0.83821 0.87468 0.86714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -14.70 9.09 -34.44 -0.31 -15.01 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.05 1.44 5.10 -29.04 -0.15 1.29 16 10 C -0.09 -2.00 5.07 -104.59 -0.53 -2.53 16 11 C -0.08 -1.67 9.69 -39.61 -0.38 -2.05 16 12 C -0.20 -3.53 9.31 -39.38 -0.37 -3.90 16 13 C 0.18 3.10 6.65 -83.79 -0.56 2.54 16 14 N -0.75 -9.72 5.57 -58.63 -0.33 -10.04 16 15 C 0.14 1.46 4.56 -4.04 -0.02 1.44 16 16 C 0.08 0.63 2.58 -67.72 -0.17 0.46 16 17 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 18 C -0.15 -1.04 5.36 -26.65 -0.14 -1.18 16 19 C -0.12 -0.73 6.00 -26.61 -0.16 -0.89 16 20 C -0.16 -0.95 6.08 -26.65 -0.16 -1.11 16 21 C 0.06 0.38 6.55 -3.83 -0.03 0.36 16 22 N -0.68 -5.52 5.94 -106.76 -0.63 -6.15 16 23 C -0.19 -3.46 9.90 -39.38 -0.39 -3.85 16 24 C -0.08 -1.64 9.69 -39.62 -0.38 -2.02 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.02 0.67 8.08 -51.93 -0.42 0.25 16 27 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 28 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 29 H 0.11 1.63 6.73 -52.49 -0.35 1.27 16 30 H 0.40 4.92 8.15 -40.82 -0.33 4.59 16 31 H 0.06 0.61 7.95 -51.93 -0.41 0.19 16 32 H 0.05 0.56 7.95 -51.93 -0.41 0.15 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.34 2.85 8.79 -39.29 -0.35 2.51 16 42 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.11 2.31 8.06 -52.49 -0.42 1.88 16 LS Contribution 345.99 15.07 5.21 5.21 Total: -1.00 -30.52 345.99 -11.20 -41.72 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.31 Total: 3.57 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -3.85 Total: -24.92 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -0.22 Total: -42.65 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.52 -11.20 -41.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171333508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.476 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds