Wall clock time and date at job start Mon Mar 30 2020 02:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99888 * 2 1 4 4 H 1.48502 * 109.46943 * 240.00274 * 3 2 1 5 5 H 1.48500 * 109.47365 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47104 * 120.00381 * 3 2 1 7 7 C 1.37878 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99505 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00255 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47001 * 180.02562 * 9 7 2 11 11 C 1.38288 * 119.92134 * 269.72273 * 10 9 7 12 12 C 1.38107 * 120.07582 * 180.28015 * 11 10 9 13 13 C 1.38910 * 119.92007 * 359.97438 * 12 11 10 14 14 N 1.39672 * 120.07095 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00361 * 0.02562 * 14 13 12 16 16 C 1.53001 * 109.47218 * 180.02562 * 15 14 13 17 17 H 1.08996 * 109.46249 * 65.00037 * 16 15 14 18 18 C 1.53041 * 109.45983 * 184.97957 * 16 15 14 19 19 C 1.53117 * 109.27753 * 179.20733 * 18 16 15 20 20 C 1.53116 * 109.14939 * 302.32792 * 19 18 16 21 21 C 1.53039 * 109.28072 * 57.66196 * 20 19 18 22 22 N 1.46840 * 109.46247 * 305.01706 * 16 15 14 23 23 C 1.38912 * 119.85498 * 0.02562 * 13 12 11 24 24 C 1.38099 * 119.92393 * 359.97438 * 23 13 12 25 25 H 0.97003 * 120.00083 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.46934 * 60.00090 * 9 7 2 27 27 H 1.09002 * 109.46712 * 300.00352 * 9 7 2 28 28 H 1.07997 * 119.96260 * 0.25959 * 11 10 9 29 29 H 1.07996 * 120.03861 * 179.97438 * 12 11 10 30 30 H 0.97003 * 120.00367 * 180.02562 * 14 13 12 31 31 H 1.08997 * 109.46888 * 300.00100 * 15 14 13 32 32 H 1.09000 * 109.47069 * 59.99640 * 15 14 13 33 33 H 1.09004 * 109.49846 * 299.13448 * 18 16 15 34 34 H 1.08993 * 109.50532 * 59.25069 * 18 16 15 35 35 H 1.08998 * 109.52356 * 182.43104 * 19 18 16 36 36 H 1.08999 * 109.58624 * 62.26044 * 19 18 16 37 37 H 1.09004 * 109.50540 * 297.71713 * 20 19 18 38 38 H 1.09008 * 109.50411 * 177.60192 * 20 19 18 39 39 H 1.09005 * 109.46189 * 180.80715 * 21 20 19 40 40 H 1.08992 * 109.45379 * 60.83075 * 21 20 19 41 41 H 1.00901 * 111.00434 * 302.34228 * 22 16 15 42 42 H 1.08001 * 120.03609 * 179.97438 * 23 13 12 43 43 H 1.07995 * 119.96616 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.6741 -4.1727 -1.1991 12 6 3.5671 -5.2262 -1.2028 13 6 4.0198 -5.7550 -0.0007 14 7 4.9225 -6.8208 -0.0007 15 6 5.3934 -7.3819 -1.2695 16 6 6.3657 -8.5297 -0.9899 17 1 5.8351 -9.3426 -0.4943 18 6 6.9524 -9.0340 -2.3104 19 6 7.9395 -10.1690 -2.0242 20 6 9.0314 -9.6589 -1.0798 21 6 8.3847 -9.1363 0.2050 22 7 7.4498 -8.0522 -0.1222 23 6 3.5719 -5.2221 1.2015 24 6 2.6790 -4.1687 1.1979 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5570 0.8897 28 1 2.3217 -3.7610 -2.1333 29 1 3.9130 -5.6384 -2.1391 30 1 5.2377 -7.1895 0.8393 31 1 4.5430 -7.7571 -1.8387 32 1 5.9012 -6.6067 -1.8434 33 1 6.1491 -9.4027 -2.9482 34 1 7.4716 -8.2180 -2.8131 35 1 8.3921 -10.5022 -2.9581 36 1 7.4135 -11.0015 -1.5569 37 1 9.5834 -8.8528 -1.5633 38 1 9.7137 -10.4740 -0.8383 39 1 9.1585 -8.7591 0.8737 40 1 7.8445 -9.9463 0.6949 41 1 7.9330 -7.2726 -0.5427 42 1 3.9217 -5.6313 2.1378 43 1 2.3306 -3.7537 2.1321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171333508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:32 Heat of formation + Delta-G solvation = -14.449064 kcal Electronic energy + Delta-G solvation = -20263.301618 eV Core-core repulsion = 17305.919953 eV Total energy + Delta-G solvation = -2957.381665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.46578 -39.73257 -36.74428 -35.03875 -33.11006 -32.53579 -31.60337 -31.27497 -28.32332 -26.60487 -24.68950 -24.11684 -23.60395 -22.14855 -21.46051 -21.21658 -18.46465 -18.06833 -17.04264 -16.65211 -16.41207 -16.07558 -15.71616 -15.64234 -15.05527 -14.83191 -14.64220 -14.41592 -14.32787 -14.10810 -13.72318 -13.34263 -13.20444 -13.14373 -12.94770 -12.69231 -12.50738 -12.39402 -12.13611 -12.08297 -11.60493 -11.59030 -11.54616 -11.33925 -11.32317 -10.56333 -10.49974 -9.64386 -9.25890 -8.26496 -7.88002 -6.28540 0.71386 0.94357 1.40355 1.43738 1.51992 2.42881 2.64847 3.14061 3.20205 3.30938 3.74794 3.90347 4.03598 4.15050 4.18937 4.27867 4.30818 4.36235 4.51198 4.54337 4.70217 4.76151 4.79014 4.82339 4.87116 4.91965 5.03755 5.08190 5.12885 5.17390 5.19840 5.23259 5.39438 5.39828 5.44162 5.60261 5.73110 5.84131 6.06208 6.13475 6.27069 6.28335 6.44594 6.67869 6.84676 7.10364 7.39553 8.93543 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.035034 B = 0.002870 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.025954 B = 9753.320402 C = 9904.517842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.526 4.526 8 H 0.052 0.948 9 C 0.064 3.936 10 C -0.126 4.126 11 C -0.089 4.089 12 C -0.197 4.197 13 C 0.201 3.799 14 N -0.732 5.732 15 C 0.135 3.865 16 C 0.088 3.912 17 H 0.084 0.916 18 C -0.147 4.147 19 C -0.117 4.117 20 C -0.155 4.155 21 C 0.059 3.941 22 N -0.687 5.687 23 C -0.193 4.193 24 C -0.089 4.089 25 H 0.265 0.735 26 H -0.003 1.003 27 H -0.003 1.003 28 H 0.108 0.892 29 H 0.133 0.867 30 H 0.407 0.593 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.343 0.657 42 H 0.135 0.865 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.391 -22.299 -3.000 29.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.564 4.564 8 H 0.070 0.930 9 C 0.027 3.973 10 C -0.128 4.128 11 C -0.108 4.108 12 C -0.219 4.219 13 C 0.098 3.902 14 N -0.364 5.364 15 C 0.010 3.990 16 C -0.023 4.023 17 H 0.102 0.898 18 C -0.187 4.187 19 C -0.155 4.155 20 C -0.194 4.194 21 C -0.071 4.071 22 N -0.317 5.317 23 C -0.215 4.215 24 C -0.108 4.108 25 H 0.073 0.927 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.126 0.874 29 H 0.151 0.849 30 H 0.244 0.756 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.161 0.839 42 H 0.153 0.847 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 17.931 -22.335 -2.599 28.760 hybrid contribution 0.413 0.970 -0.596 1.212 sum 18.345 -21.365 -3.195 28.341 Atomic orbital electron populations 1.70088 1.07690 1.27870 1.51670 1.25967 0.95799 1.03149 0.94766 0.85497 0.78293 0.78103 0.79142 1.19274 1.20494 1.19290 1.21433 0.93021 0.91535 1.50425 0.92965 1.17968 0.92799 0.91411 0.95116 1.20108 1.00929 0.97911 0.93878 1.20821 0.97116 0.95829 0.97041 1.20643 1.03489 1.00679 0.97125 1.17716 0.90432 0.88916 0.93150 1.44342 1.48229 1.35155 1.08645 1.21364 0.96479 0.94953 0.86239 1.21669 0.92011 0.95993 0.92615 0.89793 1.22170 0.99789 0.99157 0.97586 1.21533 0.96517 0.97616 0.99845 1.22233 0.98337 1.01560 0.97313 1.22023 0.94894 0.93885 0.96267 1.60597 1.13746 1.09713 1.47623 1.20638 1.03243 1.00493 0.97171 1.20812 0.97058 0.95795 0.97090 0.92666 0.98496 0.98505 0.87383 0.84884 0.75626 0.91957 0.93017 0.90626 0.91741 0.91408 0.91717 0.92201 0.90732 0.90300 0.91048 0.83931 0.84708 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.26 13.29 21.45 0.28 -57.98 16 2 C 0.00 0.04 5.46 84.65 0.46 0.51 16 3 Si 0.97 45.79 29.54 68.60 2.03 47.81 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.53 -31.57 9.09 25.60 0.23 -31.33 16 8 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 9 C 0.06 3.65 5.10 29.10 0.15 3.80 16 10 C -0.13 -5.99 5.07 -19.84 -0.10 -6.09 16 11 C -0.09 -3.73 9.69 22.25 0.22 -3.52 16 12 C -0.20 -6.66 9.31 22.40 0.21 -6.45 16 13 C 0.20 6.27 6.65 38.21 0.25 6.53 16 14 N -0.73 -16.79 5.57 -339.41 -1.89 -18.68 16 15 C 0.13 2.41 4.56 86.38 0.39 2.80 16 16 C 0.09 1.17 2.58 44.94 0.12 1.29 16 17 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 18 C -0.15 -1.62 5.36 30.65 0.16 -1.46 16 19 C -0.12 -1.14 6.00 30.67 0.18 -0.95 16 20 C -0.16 -1.45 6.08 30.65 0.19 -1.27 16 21 C 0.06 0.64 6.55 86.33 0.57 1.21 16 22 N -0.69 -9.39 5.94 -491.69 -2.92 -12.32 16 23 C -0.19 -6.57 9.90 22.40 0.22 -6.35 16 24 C -0.09 -3.72 9.69 22.25 0.22 -3.51 16 25 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 26 H 0.00 -0.20 8.08 -2.39 -0.02 -0.22 16 27 H 0.00 -0.20 8.08 -2.39 -0.02 -0.22 16 28 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 29 H 0.13 3.73 6.73 -2.91 -0.02 3.71 16 30 H 0.41 8.62 8.15 -92.71 -0.76 7.86 16 31 H 0.06 1.11 7.95 -2.39 -0.02 1.09 16 32 H 0.05 0.97 7.95 -2.39 -0.02 0.95 16 33 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.34 4.83 8.79 -89.69 -0.79 4.04 16 42 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 43 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -67.20 345.99 0.41 -66.79 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -0.56 Total: 19.17 kcal Atomic # 6 Polarization: -48.27 SS G_CDS: 3.47 Total: -44.80 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -4.53 Total: -88.97 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -67.20 0.41 -66.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171333508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.337 kcal (2) G-P(sol) polarization free energy of solvation -67.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds