Wall clock time and date at job start Mon Mar 30 2020 03:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36353 * 120.08385 * 2 1 4 4 C 1.39546 * 120.16532 * 180.02562 * 3 2 1 5 5 N 1.38854 * 119.84507 * 180.02562 * 4 3 2 6 6 C 1.46496 * 119.99813 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47259 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.46440 * 295.02816 * 7 6 5 9 9 C 1.53031 * 109.46641 * 175.05439 * 7 6 5 10 10 C 1.53123 * 109.28085 * 180.80818 * 9 7 6 11 11 C 1.53116 * 109.15980 * 57.65527 * 10 9 7 12 12 C 1.53042 * 109.27964 * 302.34556 * 11 10 9 13 13 N 1.46850 * 109.52200 * 59.18196 * 12 11 10 14 14 C 1.39589 * 120.31396 * 359.97438 * 4 3 2 15 15 C 1.36322 * 120.15968 * 0.02562 * 14 4 3 16 16 C 1.40868 * 120.08063 * 180.02562 * 2 1 3 17 17 C 1.41131 * 120.15659 * 359.97438 * 16 2 1 18 18 H 1.07998 * 120.00220 * 333.64408 * 17 16 2 19 19 C 1.39877 * 120.00150 * 153.63869 * 17 16 2 20 20 N 1.30895 * 119.99793 * 343.81265 * 19 17 16 21 21 Si 1.86800 * 120.00000 * 163.80537 * 19 17 16 22 22 H 1.48497 * 109.46815 * 60.00423 * 21 19 17 23 23 H 1.48497 * 109.47104 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47411 * 300.00599 * 21 19 17 25 25 H 1.09004 * 109.46643 * 269.97899 * 1 2 3 26 26 H 1.08996 * 109.46875 * 29.97353 * 1 2 3 27 27 H 1.08992 * 109.47333 * 149.97780 * 1 2 3 28 28 H 1.08002 * 119.91892 * 0.04590 * 3 2 1 29 29 H 0.96993 * 119.99920 * 359.97438 * 5 4 3 30 30 H 1.08998 * 109.48070 * 299.99924 * 6 5 4 31 31 H 1.08999 * 109.47076 * 60.00289 * 6 5 4 32 32 H 1.09004 * 109.50502 * 300.74657 * 9 7 6 33 33 H 1.09003 * 109.50345 * 60.86890 * 9 7 6 34 34 H 1.08997 * 109.52284 * 297.75195 * 10 9 7 35 35 H 1.08999 * 109.57536 * 177.59351 * 10 9 7 36 36 H 1.09002 * 109.50558 * 182.40580 * 11 10 9 37 37 H 1.09003 * 109.53738 * 62.30900 * 11 10 9 38 38 H 1.08999 * 109.46041 * 299.16689 * 12 11 10 39 39 H 1.09001 * 109.46298 * 179.19567 * 12 11 10 40 40 H 1.00900 * 111.00068 * 62.34969 * 13 12 11 41 41 H 1.07998 * 119.92392 * 180.27849 * 14 4 3 42 42 H 1.08004 * 120.08126 * 179.97438 * 15 14 4 43 43 H 0.96999 * 120.00055 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1818 -0.0005 5 7 4.2753 2.3872 0.0000 6 6 5.7402 2.3932 0.0000 7 6 6.2443 3.8378 0.0000 8 1 5.9535 4.3239 -0.9311 9 6 7.7696 3.8456 0.1244 10 6 8.2678 5.2934 0.1443 11 6 7.6029 6.0377 1.3055 12 6 6.0824 5.9664 1.1469 13 7 5.6557 4.5613 1.1343 14 6 4.2922 -0.0222 -0.0005 15 6 3.6221 -1.2093 -0.0005 16 6 2.2131 -1.2190 -0.0005 17 6 1.5125 -2.4441 -0.0005 18 1 0.5171 -2.4970 0.4150 19 6 2.1073 -3.5899 -0.5389 20 7 3.1550 -3.4800 -1.3158 21 14 1.4066 -5.2771 -0.1490 22 1 -0.0005 -5.3491 -0.6182 23 1 2.2119 -6.3184 -0.8361 24 1 1.4515 -5.5049 1.3177 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8897 -0.5141 28 1 1.6506 2.1152 0.0007 29 1 3.7868 3.2252 0.0004 30 1 6.1058 1.8805 0.8897 31 1 6.1056 1.8813 -0.8902 32 1 8.0619 3.3475 1.0488 33 1 8.2067 3.3220 -0.7258 34 1 8.0096 5.7804 -0.7960 35 1 9.3497 5.3055 0.2757 36 1 7.9209 7.0803 1.2991 37 1 7.8925 5.5747 2.2488 38 1 5.7922 6.4425 0.2102 39 1 5.6057 6.4833 1.9798 40 1 5.8790 4.1078 2.0076 41 1 5.3722 -0.0133 0.0036 42 1 4.1698 -2.1402 -0.0010 43 1 3.5677 -4.2745 -1.6889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171333789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:54 Heat of formation + Delta-G solvation = 2.776204 kcal Electronic energy + Delta-G solvation = -20762.650509 eV Core-core repulsion = 17806.015788 eV Total energy + Delta-G solvation = -2956.634721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.24452 -37.88320 -35.14347 -33.16158 -31.88662 -31.60764 -30.55569 -28.58766 -26.45284 -25.25763 -23.91977 -23.24526 -21.64428 -20.82327 -20.43516 -18.94207 -16.99936 -16.24916 -15.46406 -15.33698 -15.04563 -14.72175 -14.59718 -14.18731 -13.72492 -13.29603 -13.15466 -12.61675 -12.55514 -12.43848 -12.18503 -12.05685 -11.61995 -11.56277 -11.33608 -11.28152 -11.03367 -10.95843 -10.86558 -10.76981 -10.64926 -10.47489 -10.33986 -9.47094 -9.16919 -9.09868 -8.42019 -8.33071 -7.23385 -6.53933 -6.23350 -3.93843 2.99137 3.15626 3.18303 3.21856 3.44473 4.06622 4.11367 4.37220 4.58648 4.72349 4.76810 4.85294 5.04486 5.15289 5.21657 5.32483 5.51630 5.61068 5.70837 5.74458 5.80047 5.84069 5.87684 5.98430 6.06779 6.22761 6.35711 6.37643 6.54123 6.78700 6.81991 6.95170 7.03907 7.12485 7.31416 7.32126 7.46876 7.72521 7.85648 7.94403 8.24144 8.42908 8.61828 8.83906 8.96491 9.15253 9.26455 10.46771 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.034165 B = 0.003476 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.362654 B = 8053.927257 C = 8679.775774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.156 4.156 3 C -0.160 4.160 4 C 0.103 3.897 5 N -0.751 5.751 6 C 0.148 3.852 7 C 0.079 3.921 8 H 0.082 0.918 9 C -0.151 4.151 10 C -0.118 4.118 11 C -0.159 4.159 12 C 0.057 3.943 13 N -0.675 5.675 14 C -0.173 4.173 15 C -0.119 4.119 16 C 0.075 3.925 17 C -0.464 4.464 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.812 5.812 21 Si 0.901 3.099 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.267 1.267 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.391 0.609 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.342 0.658 41 H 0.085 0.915 42 H 0.116 0.884 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.277 13.760 2.958 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.158 4.158 3 C -0.182 4.182 4 C 0.006 3.994 5 N -0.387 5.387 6 C 0.021 3.979 7 C -0.032 4.032 8 H 0.100 0.900 9 C -0.191 4.191 10 C -0.156 4.156 11 C -0.198 4.198 12 C -0.072 4.072 13 N -0.304 5.304 14 C -0.195 4.195 15 C -0.139 4.139 16 C 0.072 3.928 17 C -0.496 4.496 18 H 0.091 0.909 19 C -0.140 4.140 20 N -0.439 5.439 21 Si 0.726 3.274 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.192 1.192 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.225 0.775 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.161 0.839 41 H 0.103 0.897 42 H 0.134 0.866 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.994 13.653 2.480 16.014 hybrid contribution 0.727 -0.612 0.359 1.016 sum 8.720 13.041 2.839 15.942 Atomic orbital electron populations 1.20413 0.93784 1.00438 0.99551 1.19308 0.94094 0.92782 1.09598 1.19647 0.91573 0.96378 1.10645 1.17375 0.90651 0.85256 1.06156 1.43719 1.02894 1.05358 1.86686 1.20977 0.83457 0.93408 1.00035 1.21815 0.91344 0.94930 0.95096 0.89966 1.22218 0.97251 0.96861 1.02760 1.21535 0.99778 0.95586 0.98665 1.22280 0.98111 1.00688 0.98737 1.22014 0.92396 0.90422 1.02411 1.60579 1.61498 1.02105 1.06252 1.20065 0.96958 0.92123 1.10358 1.20896 0.94641 0.95997 1.02388 1.17321 0.91591 0.91574 0.92328 1.19309 1.01995 0.92705 1.35552 0.90880 1.25776 0.94477 1.00744 0.93044 1.69842 1.19453 1.31014 1.23630 0.86500 0.79648 0.81660 0.79566 1.19341 1.20706 1.19200 0.94078 0.94543 0.91986 0.89623 0.77482 0.93936 0.93255 0.91734 0.91125 0.91931 0.92106 0.91736 0.92080 0.91098 0.90842 0.83941 0.89688 0.86594 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.83 9.39 36.01 0.34 -1.50 16 2 C -0.16 -3.88 5.90 -104.31 -0.62 -4.49 16 3 C -0.16 -3.71 9.46 -39.77 -0.38 -4.08 16 4 C 0.10 2.31 6.67 -83.69 -0.56 1.75 16 5 N -0.75 -13.47 5.53 -58.50 -0.32 -13.79 16 6 C 0.15 2.20 4.53 -4.04 -0.02 2.18 16 7 C 0.08 0.90 2.58 -67.72 -0.17 0.73 16 8 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 9 C -0.15 -1.46 5.36 -26.65 -0.14 -1.61 16 10 C -0.12 -0.99 6.00 -26.61 -0.16 -1.15 16 11 C -0.16 -1.26 6.08 -26.65 -0.16 -1.42 16 12 C 0.06 0.51 6.55 -3.83 -0.03 0.49 16 13 N -0.68 -7.43 5.94 -106.75 -0.63 -8.06 16 14 C -0.17 -4.14 9.23 -39.77 -0.37 -4.51 16 15 C -0.12 -3.18 8.62 -39.26 -0.34 -3.52 16 16 C 0.07 2.04 5.56 -106.80 -0.59 1.44 16 17 C -0.46 -12.63 8.09 -37.87 -0.31 -12.94 16 18 H 0.07 1.92 6.89 -52.49 -0.36 1.56 16 19 C 0.07 1.93 5.15 -17.34 -0.09 1.84 16 20 N -0.81 -21.87 10.98 55.54 0.61 -21.26 16 21 Si 0.90 19.53 29.59 -169.99 -5.03 14.50 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 27 H 0.06 1.37 6.78 -51.93 -0.35 1.02 16 28 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 29 H 0.39 6.66 8.14 -40.82 -0.33 6.33 16 30 H 0.04 0.66 7.92 -51.93 -0.41 0.25 16 31 H 0.05 0.78 7.93 -51.93 -0.41 0.37 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.34 3.79 8.79 -39.29 -0.35 3.44 16 41 H 0.08 1.87 6.68 -52.49 -0.35 1.51 16 42 H 0.12 3.21 6.23 -52.48 -0.33 2.88 16 43 H 0.27 6.83 8.30 -40.82 -0.34 6.49 16 LS Contribution 337.76 15.07 5.09 5.09 Total: -1.00 -28.01 337.76 -10.97 -38.98 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -7.10 Total: 11.31 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -3.59 Total: -26.78 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: -0.35 Total: -43.11 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.01 -10.97 -38.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171333789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.761 kcal (2) G-P(sol) polarization free energy of solvation -28.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds