Wall clock time and date at job start Mon Mar 30 2020 03:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36353 * 120.08385 * 2 1 4 4 C 1.39546 * 120.16532 * 180.02562 * 3 2 1 5 5 N 1.38854 * 119.84507 * 180.02562 * 4 3 2 6 6 C 1.46496 * 119.99813 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47259 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.46440 * 295.02816 * 7 6 5 9 9 C 1.53031 * 109.46641 * 175.05439 * 7 6 5 10 10 C 1.53123 * 109.28085 * 180.80818 * 9 7 6 11 11 C 1.53116 * 109.15980 * 57.65527 * 10 9 7 12 12 C 1.53042 * 109.27964 * 302.34556 * 11 10 9 13 13 N 1.46850 * 109.52200 * 59.18196 * 12 11 10 14 14 C 1.39589 * 120.31396 * 359.97438 * 4 3 2 15 15 C 1.36322 * 120.15968 * 0.02562 * 14 4 3 16 16 C 1.40868 * 120.08063 * 180.02562 * 2 1 3 17 17 C 1.41131 * 120.15659 * 359.97438 * 16 2 1 18 18 H 1.07998 * 120.00220 * 333.64408 * 17 16 2 19 19 C 1.39877 * 120.00150 * 153.63869 * 17 16 2 20 20 N 1.30895 * 119.99793 * 343.81265 * 19 17 16 21 21 Si 1.86800 * 120.00000 * 163.80537 * 19 17 16 22 22 H 1.48497 * 109.46815 * 60.00423 * 21 19 17 23 23 H 1.48497 * 109.47104 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47411 * 300.00599 * 21 19 17 25 25 H 1.09004 * 109.46643 * 269.97899 * 1 2 3 26 26 H 1.08996 * 109.46875 * 29.97353 * 1 2 3 27 27 H 1.08992 * 109.47333 * 149.97780 * 1 2 3 28 28 H 1.08002 * 119.91892 * 0.04590 * 3 2 1 29 29 H 0.96993 * 119.99920 * 359.97438 * 5 4 3 30 30 H 1.08998 * 109.48070 * 299.99924 * 6 5 4 31 31 H 1.08999 * 109.47076 * 60.00289 * 6 5 4 32 32 H 1.09004 * 109.50502 * 300.74657 * 9 7 6 33 33 H 1.09003 * 109.50345 * 60.86890 * 9 7 6 34 34 H 1.08997 * 109.52284 * 297.75195 * 10 9 7 35 35 H 1.08999 * 109.57536 * 177.59351 * 10 9 7 36 36 H 1.09002 * 109.50558 * 182.40580 * 11 10 9 37 37 H 1.09003 * 109.53738 * 62.30900 * 11 10 9 38 38 H 1.08999 * 109.46041 * 299.16689 * 12 11 10 39 39 H 1.09001 * 109.46298 * 179.19567 * 12 11 10 40 40 H 1.00900 * 111.00068 * 62.34969 * 13 12 11 41 41 H 1.07998 * 119.92392 * 180.27849 * 14 4 3 42 42 H 1.08004 * 120.08126 * 179.97438 * 15 14 4 43 43 H 0.96999 * 120.00055 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1818 -0.0005 5 7 4.2753 2.3872 0.0000 6 6 5.7402 2.3932 0.0000 7 6 6.2443 3.8378 0.0000 8 1 5.9535 4.3239 -0.9311 9 6 7.7696 3.8456 0.1244 10 6 8.2678 5.2934 0.1443 11 6 7.6029 6.0377 1.3055 12 6 6.0824 5.9664 1.1469 13 7 5.6557 4.5613 1.1343 14 6 4.2922 -0.0222 -0.0005 15 6 3.6221 -1.2093 -0.0005 16 6 2.2131 -1.2190 -0.0005 17 6 1.5125 -2.4441 -0.0005 18 1 0.5171 -2.4970 0.4150 19 6 2.1073 -3.5899 -0.5389 20 7 3.1550 -3.4800 -1.3158 21 14 1.4066 -5.2771 -0.1490 22 1 -0.0005 -5.3491 -0.6182 23 1 2.2119 -6.3184 -0.8361 24 1 1.4515 -5.5049 1.3177 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8897 -0.5141 28 1 1.6506 2.1152 0.0007 29 1 3.7868 3.2252 0.0004 30 1 6.1058 1.8805 0.8897 31 1 6.1056 1.8813 -0.8902 32 1 8.0619 3.3475 1.0488 33 1 8.2067 3.3220 -0.7258 34 1 8.0096 5.7804 -0.7960 35 1 9.3497 5.3055 0.2757 36 1 7.9209 7.0803 1.2991 37 1 7.8925 5.5747 2.2488 38 1 5.7922 6.4425 0.2102 39 1 5.6057 6.4833 1.9798 40 1 5.8790 4.1078 2.0076 41 1 5.3722 -0.0133 0.0036 42 1 4.1698 -2.1402 -0.0010 43 1 3.5677 -4.2745 -1.6889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171333789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:54 Heat of formation + Delta-G solvation = -13.139408 kcal Electronic energy + Delta-G solvation = -20763.340662 eV Core-core repulsion = 17806.015788 eV Total energy + Delta-G solvation = -2957.324874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.26851 -39.54844 -36.70280 -34.92719 -33.13220 -32.53511 -32.20459 -30.24572 -28.13615 -26.67811 -25.57105 -24.14031 -22.94080 -22.36729 -21.30580 -20.68125 -18.95144 -17.70013 -16.77162 -16.61910 -16.36617 -15.94074 -15.64176 -15.47893 -15.00312 -14.71240 -14.52055 -14.33672 -14.03353 -13.75127 -13.47363 -13.37396 -13.01355 -12.87441 -12.82703 -12.70694 -12.65602 -12.37031 -12.19856 -12.10787 -11.97215 -11.56226 -11.38317 -11.30827 -11.06657 -10.98806 -10.13242 -9.23262 -9.14415 -8.46601 -8.04118 -5.91901 1.15681 1.24501 1.41630 1.52000 1.63673 2.30524 2.91138 2.93387 3.34429 3.78945 3.87560 3.91041 4.04364 4.18382 4.32696 4.36960 4.50088 4.51465 4.54694 4.73171 4.78708 4.80861 4.88384 4.92518 5.00081 5.05678 5.08542 5.10622 5.16519 5.18742 5.21618 5.36091 5.37293 5.39405 5.57266 5.80641 5.97102 6.03662 6.12974 6.28796 6.46458 6.50792 6.76127 6.97060 7.17055 7.26428 7.45196 8.55915 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.034165 B = 0.003476 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.362654 B = 8053.927257 C = 8679.775774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.163 4.163 3 C -0.173 4.173 4 C 0.120 3.880 5 N -0.739 5.739 6 C 0.145 3.855 7 C 0.091 3.909 8 H 0.080 0.920 9 C -0.148 4.148 10 C -0.116 4.116 11 C -0.154 4.154 12 C 0.058 3.942 13 N -0.686 5.686 14 C -0.187 4.187 15 C -0.140 4.140 16 C 0.033 3.967 17 C -0.495 4.495 18 H 0.072 0.928 19 C 0.029 3.971 20 N -0.847 5.847 21 Si 0.972 3.028 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.264 1.264 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.112 0.888 29 H 0.400 0.600 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.342 0.658 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.436 15.522 3.375 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.165 4.165 3 C -0.195 4.195 4 C 0.020 3.980 5 N -0.374 5.374 6 C 0.019 3.981 7 C -0.019 4.019 8 H 0.098 0.902 9 C -0.187 4.187 10 C -0.153 4.153 11 C -0.193 4.193 12 C -0.071 4.071 13 N -0.316 5.316 14 C -0.209 4.209 15 C -0.161 4.161 16 C 0.031 3.969 17 C -0.527 4.527 18 H 0.090 0.910 19 C -0.182 4.182 20 N -0.476 5.476 21 Si 0.795 3.205 22 H -0.186 1.186 23 H -0.199 1.199 24 H -0.189 1.189 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.130 0.870 29 H 0.235 0.765 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.160 0.840 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.168 15.469 2.899 17.732 hybrid contribution 0.738 -0.957 0.239 1.232 sum 8.906 14.511 3.138 17.313 Atomic orbital electron populations 1.20400 0.91691 1.01037 1.00613 1.19771 0.95974 0.92633 1.08163 1.19952 0.92060 0.96929 1.10545 1.17509 0.90891 0.86258 1.03320 1.43769 1.04223 1.04141 1.85245 1.21122 0.81484 0.96026 0.99426 1.21614 0.92471 0.92469 0.95369 0.90159 1.22173 0.95720 0.98097 1.02746 1.21528 1.00368 0.94420 0.99007 1.22226 0.97137 1.01466 0.98445 1.22051 0.93274 0.89021 1.02753 1.60569 1.61941 1.03134 1.05918 1.20176 0.97746 0.92039 1.10954 1.20839 0.94904 0.96169 1.04156 1.17668 0.92117 0.92827 0.94322 1.19522 1.02403 0.93838 1.36935 0.90993 1.26587 0.94802 1.04342 0.92427 1.69926 1.20890 1.32129 1.24688 0.85405 0.79089 0.76777 0.79276 1.18590 1.19860 1.18909 0.92662 0.92019 0.93228 0.86990 0.76533 0.94301 0.93991 0.91848 0.91084 0.91738 0.91154 0.90359 0.92121 0.91150 0.90032 0.84022 0.88347 0.88745 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.40 9.39 71.24 0.67 -2.73 16 2 C -0.16 -8.13 5.90 -19.66 -0.12 -8.25 16 3 C -0.17 -7.78 9.46 22.15 0.21 -7.57 16 4 C 0.12 5.29 6.67 38.67 0.26 5.55 16 5 N -0.74 -25.37 5.53 -339.01 -1.88 -27.24 16 6 C 0.15 4.15 4.53 86.38 0.39 4.55 16 7 C 0.09 1.93 2.58 44.93 0.12 2.05 16 8 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 9 C -0.15 -2.58 5.36 30.65 0.16 -2.41 16 10 C -0.12 -1.64 6.00 30.67 0.18 -1.45 16 11 C -0.15 -2.01 6.08 30.65 0.19 -1.82 16 12 C 0.06 0.90 6.55 86.33 0.57 1.46 16 13 N -0.69 -13.67 5.94 -491.66 -2.92 -16.59 16 14 C -0.19 -9.08 9.23 22.15 0.20 -8.87 16 15 C -0.14 -7.79 8.62 22.48 0.19 -7.60 16 16 C 0.03 1.88 5.56 -21.27 -0.12 1.76 16 17 C -0.50 -27.80 8.09 23.38 0.19 -27.61 16 18 H 0.07 3.88 6.89 -2.91 -0.02 3.86 16 19 C 0.03 1.57 5.15 85.23 0.44 2.01 16 20 N -0.85 -47.31 10.98 21.82 0.24 -47.07 16 21 Si 0.97 40.86 29.59 68.60 2.03 42.89 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 25 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.06 2.24 8.08 -2.39 -0.02 2.22 16 27 H 0.05 2.19 6.78 -2.39 -0.02 2.17 16 28 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 29 H 0.40 12.67 8.14 -92.71 -0.75 11.91 16 30 H 0.04 1.17 7.92 -2.39 -0.02 1.15 16 31 H 0.04 1.29 7.93 -2.39 -0.02 1.27 16 32 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.34 6.91 8.79 -89.69 -0.79 6.12 16 41 H 0.10 4.38 6.68 -2.91 -0.02 4.36 16 42 H 0.09 5.53 6.23 -2.91 -0.02 5.51 16 43 H 0.28 14.30 8.30 -92.71 -0.77 13.53 16 Total: -1.00 -61.48 337.76 0.47 -61.01 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: -0.54 Total: 37.95 kcal Atomic # 6 Polarization: -54.48 SS G_CDS: 3.54 Total: -50.94 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -4.56 Total: -90.91 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -61.48 0.47 -61.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171333789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.871 kcal (2) G-P(sol) polarization free energy of solvation -61.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds