Wall clock time and date at job start Mon Mar 30 2020 03:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36364 * 120.07725 * 2 1 4 4 C 1.39536 * 120.16046 * 179.97438 * 3 2 1 5 5 N 1.38853 * 119.84412 * 180.02562 * 4 3 2 6 6 C 1.46499 * 120.00244 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.47268 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.46435 * 65.01925 * 7 6 5 9 9 C 1.53035 * 109.46364 * 185.00164 * 7 6 5 10 10 C 1.53122 * 109.27807 * 179.19516 * 9 7 6 11 11 C 1.53112 * 109.15920 * 302.33988 * 10 9 7 12 12 C 1.53045 * 109.27818 * 57.65724 * 11 10 9 13 13 N 1.46843 * 109.51951 * 300.81792 * 12 11 10 14 14 C 1.39593 * 120.31978 * 0.27767 * 4 3 2 15 15 C 1.36329 * 120.15418 * 359.44185 * 14 4 3 16 16 C 1.40864 * 120.08620 * 179.97438 * 2 1 3 17 17 C 1.41134 * 120.15082 * 0.04253 * 16 2 1 18 18 H 1.07995 * 120.00534 * 25.58930 * 17 16 2 19 19 C 1.39872 * 119.99914 * 205.59362 * 17 16 2 20 20 N 1.30906 * 119.99706 * 15.43701 * 19 17 16 21 21 Si 1.86795 * 120.00153 * 195.44367 * 19 17 16 22 22 H 1.48504 * 109.46895 * 89.99983 * 21 19 17 23 23 H 1.48503 * 109.46906 * 209.99475 * 21 19 17 24 24 H 1.48500 * 109.47137 * 329.99782 * 21 19 17 25 25 H 1.09002 * 109.47600 * 89.99799 * 1 2 3 26 26 H 1.09003 * 109.46552 * 209.99719 * 1 2 3 27 27 H 1.08996 * 109.47449 * 329.99336 * 1 2 3 28 28 H 1.08002 * 119.92051 * 0.02562 * 3 2 1 29 29 H 0.96998 * 120.00190 * 359.97438 * 5 4 3 30 30 H 1.08997 * 109.47190 * 60.00111 * 6 5 4 31 31 H 1.09001 * 109.46920 * 299.99904 * 6 5 4 32 32 H 1.09002 * 109.50005 * 299.13401 * 9 7 6 33 33 H 1.08996 * 109.50722 * 59.24909 * 9 7 6 34 34 H 1.08999 * 109.52094 * 62.24929 * 10 9 7 35 35 H 1.08998 * 109.51890 * 182.37424 * 10 9 7 36 36 H 1.08999 * 109.50658 * 177.59487 * 11 10 9 37 37 H 1.09000 * 109.50614 * 297.67734 * 11 10 9 38 38 H 1.09001 * 109.45865 * 60.83250 * 12 11 10 39 39 H 1.09003 * 109.46261 * 180.80184 * 12 11 10 40 40 H 1.00893 * 111.00257 * 297.64000 * 13 12 11 41 41 H 1.07993 * 119.92548 * 179.70294 * 14 4 3 42 42 H 1.08001 * 120.07998 * 180.29425 * 15 14 4 43 43 H 0.96997 * 119.99863 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1800 0.0000 4 6 3.5858 1.1821 0.0005 5 7 4.2750 2.3874 0.0011 6 6 5.7400 2.3936 0.0011 7 6 6.2439 3.8383 0.0024 8 1 5.9538 4.3233 0.9343 9 6 7.7691 3.8464 -0.1234 10 6 8.2671 5.2942 -0.1419 11 6 7.6012 6.0399 -1.3016 12 6 6.0808 5.9682 -1.1417 13 7 5.6543 4.5631 -1.1305 14 6 4.2922 -0.0219 -0.0048 15 6 3.6221 -1.2091 0.0010 16 6 2.2132 -1.2189 0.0005 17 6 1.5125 -2.4440 0.0002 18 1 0.5125 -2.4942 -0.4044 19 6 2.1134 -3.5934 0.5239 20 7 3.1787 -3.4895 1.2777 21 14 1.3960 -5.2765 0.1478 22 1 2.0189 -5.8152 -1.0880 23 1 1.6698 -6.1959 1.2813 24 1 -0.0710 -5.1566 -0.0491 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6504 2.1153 0.0004 29 1 3.7865 3.2255 0.0007 30 1 6.1055 1.8817 -0.8891 31 1 6.1054 1.8809 0.8909 32 1 8.2070 3.3217 0.7257 33 1 8.0606 3.3494 -1.0486 34 1 8.0097 5.7800 0.7993 35 1 9.3490 5.3056 -0.2738 36 1 7.9190 7.0825 -1.2943 37 1 7.8906 5.5779 -2.2454 38 1 5.7914 6.4431 -0.2042 39 1 5.6033 6.4861 -1.9736 40 1 5.8767 4.1108 -2.0045 41 1 5.3721 -0.0129 -0.0092 42 1 4.1699 -2.1399 0.0017 43 1 3.5952 -4.2865 1.6412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171333790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:58 Heat of formation + Delta-G solvation = -12.963671 kcal Electronic energy + Delta-G solvation = -20764.560872 eV Core-core repulsion = 17807.243618 eV Total energy + Delta-G solvation = -2957.317253 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.26867 -39.54869 -36.70512 -34.92970 -33.13293 -32.53595 -32.19749 -30.24342 -28.13687 -26.67876 -25.57517 -24.14018 -22.93680 -22.36542 -21.30610 -20.68231 -18.95476 -17.70380 -16.76845 -16.61764 -16.36634 -15.94067 -15.64078 -15.47715 -15.00311 -14.71001 -14.52239 -14.34845 -14.03304 -13.74957 -13.47464 -13.36171 -13.01202 -12.87100 -12.81807 -12.72903 -12.65776 -12.35904 -12.19215 -12.09985 -11.97287 -11.56229 -11.37727 -11.30478 -11.05934 -11.00897 -10.13089 -9.23251 -9.14240 -8.45856 -8.04648 -5.92014 1.14776 1.24423 1.41687 1.53694 1.63103 2.30438 2.91156 2.93456 3.34433 3.78973 3.87914 3.91029 4.04343 4.18376 4.32690 4.36929 4.50315 4.51447 4.54950 4.73170 4.78683 4.80854 4.88373 4.92511 5.00428 5.05647 5.08474 5.10639 5.16504 5.18748 5.21722 5.36378 5.37411 5.39414 5.57622 5.81308 5.97057 6.04558 6.13011 6.29000 6.46483 6.50955 6.76391 6.97229 7.17201 7.26541 7.45275 8.55934 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.034206 B = 0.003476 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.366952 B = 8053.921873 C = 8682.586636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.163 4.163 3 C -0.173 4.173 4 C 0.120 3.880 5 N -0.739 5.739 6 C 0.145 3.855 7 C 0.091 3.909 8 H 0.080 0.920 9 C -0.148 4.148 10 C -0.116 4.116 11 C -0.153 4.153 12 C 0.058 3.942 13 N -0.686 5.686 14 C -0.187 4.187 15 C -0.141 4.141 16 C 0.032 3.968 17 C -0.493 4.493 18 H 0.072 0.928 19 C 0.028 3.972 20 N -0.848 5.848 21 Si 0.974 3.026 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.260 1.260 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.112 0.888 29 H 0.400 0.600 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.342 0.658 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.383 15.533 -3.325 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.165 4.165 3 C -0.195 4.195 4 C 0.020 3.980 5 N -0.374 5.374 6 C 0.019 3.981 7 C -0.019 4.019 8 H 0.098 0.902 9 C -0.187 4.187 10 C -0.153 4.153 11 C -0.193 4.193 12 C -0.071 4.071 13 N -0.316 5.316 14 C -0.210 4.210 15 C -0.161 4.161 16 C 0.029 3.971 17 C -0.524 4.524 18 H 0.090 0.910 19 C -0.183 4.183 20 N -0.477 5.477 21 Si 0.796 3.204 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.183 1.183 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.235 0.765 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.160 0.840 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.112 15.478 -2.853 17.707 hybrid contribution 0.747 -0.954 -0.240 1.236 sum 8.859 14.524 -3.093 17.292 Atomic orbital electron populations 1.20402 0.91699 1.01039 1.00610 1.19767 0.95960 0.92632 1.08180 1.19949 0.92058 0.96924 1.10586 1.17513 0.90896 0.86258 1.03311 1.43773 1.04223 1.04145 1.85244 1.21123 0.81488 0.96025 0.99421 1.21614 0.92464 0.92454 0.95385 0.90156 1.22174 0.95725 0.98102 1.02742 1.21528 1.00363 0.94411 0.99022 1.22224 0.97135 1.01460 0.98451 1.22050 0.93272 0.89015 1.02755 1.60557 1.61939 1.03132 1.05943 1.20187 0.97741 0.92051 1.10987 1.20891 0.94939 0.96279 1.04011 1.17681 0.92146 0.92835 0.94423 1.19562 1.01935 0.93652 1.37291 0.90995 1.26598 0.94901 1.04348 0.92446 1.69934 1.20254 1.31855 1.25633 0.85332 0.79571 0.77015 0.78490 1.19237 1.19893 1.18336 0.92678 0.93227 0.92008 0.86997 0.76536 0.94312 0.93993 0.91087 0.91853 0.91736 0.91156 0.90356 0.92122 0.91146 0.90028 0.84021 0.88366 0.88487 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.41 9.39 71.24 0.67 -2.74 16 2 C -0.16 -8.13 5.90 -19.66 -0.12 -8.24 16 3 C -0.17 -7.79 9.46 22.15 0.21 -7.58 16 4 C 0.12 5.30 6.67 38.67 0.26 5.55 16 5 N -0.74 -25.39 5.53 -339.00 -1.88 -27.27 16 6 C 0.15 4.16 4.53 86.38 0.39 4.55 16 7 C 0.09 1.93 2.58 44.94 0.12 2.05 16 8 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 9 C -0.15 -2.58 5.36 30.65 0.16 -2.42 16 10 C -0.12 -1.64 6.00 30.67 0.18 -1.46 16 11 C -0.15 -2.01 6.08 30.65 0.19 -1.82 16 12 C 0.06 0.90 6.55 86.33 0.57 1.46 16 13 N -0.69 -13.68 5.94 -491.67 -2.92 -16.61 16 14 C -0.19 -9.11 9.23 22.15 0.20 -8.90 16 15 C -0.14 -7.82 8.63 22.48 0.19 -7.63 16 16 C 0.03 1.79 5.57 -21.27 -0.12 1.67 16 17 C -0.49 -27.64 8.12 23.38 0.19 -27.45 16 18 H 0.07 3.89 6.85 -2.91 -0.02 3.87 16 19 C 0.03 1.48 5.18 85.23 0.44 1.92 16 20 N -0.85 -47.27 10.88 21.82 0.24 -47.04 16 21 Si 0.97 40.89 29.59 68.60 2.03 42.92 16 22 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 24 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 25 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.05 2.19 6.77 -2.39 -0.02 2.17 16 27 H 0.06 2.24 8.08 -2.39 -0.02 2.23 16 28 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 29 H 0.40 12.68 8.13 -92.71 -0.75 11.92 16 30 H 0.04 1.16 7.92 -2.39 -0.02 1.15 16 31 H 0.04 1.29 7.94 -2.39 -0.02 1.27 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.34 6.92 8.79 -89.70 -0.79 6.13 16 41 H 0.10 4.38 6.68 -2.91 -0.02 4.36 16 42 H 0.10 5.69 6.14 -2.91 -0.02 5.67 16 43 H 0.28 14.23 8.30 -92.71 -0.77 13.47 16 Total: -1.00 -61.46 337.58 0.47 -60.99 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: -0.54 Total: 38.02 kcal Atomic # 6 Polarization: -54.57 SS G_CDS: 3.54 Total: -51.03 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -4.56 Total: -90.91 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -61.46 0.47 -60.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171333790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.027 kcal (2) G-P(sol) polarization free energy of solvation -61.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds