Wall clock time and date at job start Mon Mar 30 2020 01:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08995 * 109.47051 * 2 1 4 4 C 1.53007 * 109.46827 * 240.00152 * 2 1 3 5 5 C 1.52995 * 109.46508 * 175.00205 * 4 2 1 6 6 C 1.50702 * 109.46806 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00188 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00103 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00104 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99857 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47310 * 90.00063 * 10 8 6 12 12 H 1.48497 * 109.47499 * 210.00173 * 10 8 6 13 13 H 1.48498 * 109.47344 * 330.00016 * 10 8 6 14 14 N 1.46894 * 109.46929 * 120.00513 * 2 1 3 15 15 C 1.46901 * 111.00154 * 275.00007 * 14 2 1 16 16 C 1.50693 * 109.47821 * 180.02562 * 15 14 2 17 17 C 1.35005 * 125.68771 * 94.99129 * 16 15 14 18 18 N 1.36839 * 107.09910 * 179.97438 * 17 16 15 19 19 C 1.36446 * 132.73863 * 179.97438 * 18 17 16 20 20 C 1.35586 * 119.07914 * 179.97438 * 19 18 17 21 21 C 1.40203 * 119.32022 * 0.04133 * 20 19 18 22 22 N 1.31224 * 120.38264 * 359.97438 * 21 20 19 23 23 C 1.34084 * 120.91791 * 0.02562 * 22 21 20 24 24 N 1.32524 * 131.94108 * 180.02562 * 23 22 21 25 25 H 1.09003 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.46907 * 299.99789 * 1 2 3 27 27 H 1.09001 * 109.46754 * 60.00135 * 1 2 3 28 28 H 1.08999 * 109.47053 * 294.99669 * 4 2 1 29 29 H 1.08997 * 109.47188 * 55.00356 * 4 2 1 30 30 H 1.08998 * 109.47427 * 299.99836 * 5 4 2 31 31 H 1.09006 * 109.47485 * 60.00194 * 5 4 2 32 32 H 0.97001 * 119.99831 * 179.97438 * 9 8 6 33 33 H 1.00905 * 111.00369 * 38.95044 * 14 2 1 34 34 H 1.08997 * 109.47265 * 59.99516 * 15 14 2 35 35 H 1.09007 * 109.46879 * 300.00549 * 15 14 2 36 36 H 1.07998 * 126.44752 * 359.96834 * 17 16 15 37 37 H 1.08004 * 120.46176 * 359.97438 * 19 18 17 38 38 H 1.07993 * 120.33699 * 180.02562 * 20 19 18 39 39 H 1.08002 * 119.80747 * 180.25506 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0672 -1.3242 -2.5438 7 1 3.3688 -1.8046 -3.2130 8 6 5.4186 -1.3614 -2.8151 9 7 5.8570 -1.9814 -3.8889 10 14 6.6266 -0.5300 -1.6580 11 1 7.0613 -1.4967 -0.6180 12 1 7.8089 -0.0654 -2.4270 13 1 5.9700 0.6332 -1.0091 14 7 2.0197 -0.6926 1.1993 15 6 2.0825 0.2224 2.3469 16 6 2.5885 -0.5217 3.5557 17 6 3.8717 -0.5667 3.9727 18 7 3.9018 -1.3434 5.0989 19 6 4.9121 -1.7294 5.9308 20 6 4.6247 -2.5214 6.9931 21 6 3.2996 -2.9247 7.2102 22 7 2.3465 -2.5396 6.3946 23 6 2.6167 -1.7564 5.3403 24 7 1.8416 -1.2463 4.3941 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.7517 -1.7715 -1.2057 29 1 1.6055 -0.2617 -2.1370 30 1 3.8532 0.4369 -1.3573 31 1 3.9995 -1.0729 -0.4259 32 1 6.8077 -2.0072 -4.0798 33 1 1.4495 -1.4980 1.4099 34 1 1.0872 0.6162 2.5525 35 1 2.7589 1.0461 2.1182 36 1 4.7156 -0.0811 3.5053 37 1 5.9266 -1.4084 5.7458 38 1 5.4085 -2.8386 7.6649 39 1 3.0612 -3.5522 8.0563 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:38 Heat of formation + Delta-G solvation = 99.719874 kcal Electronic energy + Delta-G solvation = -20286.838122 eV Core-core repulsion = 17230.866850 eV Total energy + Delta-G solvation = -3055.971272 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.15151 -38.66430 -37.14973 -34.79046 -33.37535 -32.11930 -30.81988 -29.79629 -28.80301 -26.02917 -25.11890 -23.77941 -23.50320 -21.02131 -20.82158 -19.77752 -18.37361 -17.83666 -16.59869 -16.49783 -16.38691 -15.28470 -14.85041 -14.71561 -14.35383 -14.14554 -13.76678 -13.29053 -12.92419 -12.85615 -12.54438 -12.41561 -12.30645 -11.98681 -11.93855 -11.45437 -11.34611 -10.85962 -10.63471 -10.41651 -10.00924 -9.84924 -9.60726 -9.44697 -9.26092 -8.99659 -8.42259 -8.29828 -7.98198 -5.93421 -3.88810 0.27782 0.83300 2.19146 2.54123 3.33334 3.37075 3.40279 3.42726 3.48856 4.02687 4.15338 4.43984 4.55122 4.62741 4.77731 4.98055 5.05335 5.30002 5.32089 5.35133 5.42324 5.54300 5.57939 5.68819 5.72534 5.90925 6.06538 6.27373 6.34542 6.36000 6.41815 6.57561 6.76736 7.14249 7.34017 7.35458 7.55809 7.69021 7.76459 7.81330 7.95755 8.67981 9.13604 9.70791 11.20724 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.004487 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.058392 B = 6239.393287 C = 7477.052265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.082 3.918 3 H 0.074 0.926 4 C -0.090 4.090 5 C -0.006 4.006 6 C -0.515 4.515 7 H 0.068 0.932 8 C 0.062 3.938 9 N -0.910 5.910 10 Si 0.883 3.117 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.265 1.265 14 N -0.671 5.671 15 C 0.138 3.862 16 C 0.085 3.915 17 C -0.070 4.070 18 N -0.400 5.400 19 C 0.115 3.885 20 C -0.213 4.213 21 C 0.165 3.835 22 N -0.437 5.437 23 C 0.373 3.627 24 N -0.465 5.465 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.007 0.993 31 H 0.026 0.974 32 H 0.260 0.740 33 H 0.343 0.657 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.190 0.810 37 H 0.174 0.826 38 H 0.163 0.837 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 2.961 23.831 24.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.027 4.027 3 H 0.092 0.908 4 C -0.128 4.128 5 C -0.044 4.044 6 C -0.553 4.553 7 H 0.086 0.914 8 C -0.138 4.138 9 N -0.550 5.550 10 Si 0.711 3.289 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.190 1.190 14 N -0.302 5.302 15 C 0.008 3.992 16 C -0.048 4.048 17 C -0.202 4.202 18 N -0.078 5.078 19 C -0.017 4.017 20 C -0.236 4.236 21 C -0.023 4.023 22 N -0.148 5.148 23 C 0.025 3.975 24 N -0.188 5.188 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.162 0.838 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.207 0.793 37 H 0.192 0.808 38 H 0.181 0.819 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.603 2.793 23.385 23.825 hybrid contribution 1.673 0.678 0.720 1.943 sum -1.930 3.470 24.105 24.429 Atomic orbital electron populations 1.22520 0.98091 1.01922 1.01450 1.21788 0.91531 0.98258 0.91172 0.90810 1.21449 0.98867 0.99136 0.93329 1.19472 0.91601 0.96114 0.97190 1.21292 0.92802 1.33682 1.07530 0.91386 1.25036 0.98447 0.95150 0.95121 1.69935 1.14342 1.44152 1.26588 0.86722 0.80556 0.80529 0.81112 1.20605 1.21845 1.18963 1.60602 1.58188 1.09093 1.02337 1.20273 0.99747 0.93797 0.85375 1.20900 0.89375 0.98030 0.96502 1.22548 1.01301 1.05166 0.91162 1.43962 1.10443 1.33543 1.19822 1.22222 0.93915 0.95705 0.89860 1.21776 0.99743 1.02370 0.99738 1.23272 0.87928 0.94796 0.96278 1.67864 1.34885 1.10424 1.01627 1.21908 0.78758 0.99996 0.96888 1.70580 1.30219 1.14409 1.03593 0.92562 0.93464 0.92082 0.92866 0.92738 0.97458 0.95574 0.93019 0.83804 0.93513 0.89219 0.79315 0.80847 0.81905 0.80224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 9.16 37.16 0.34 -2.11 16 2 C 0.08 1.31 2.59 -67.71 -0.18 1.14 16 3 H 0.07 1.16 7.80 -51.93 -0.41 0.75 16 4 C -0.09 -1.81 4.83 -26.73 -0.13 -1.94 16 5 C -0.01 -0.16 3.93 -27.88 -0.11 -0.27 16 6 C -0.51 -15.15 9.66 -34.44 -0.33 -15.48 16 7 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 8 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 9 N -0.91 -28.87 13.96 55.43 0.77 -28.09 16 10 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 14 N -0.67 -10.77 5.69 -107.99 -0.61 -11.38 16 15 C 0.14 1.91 6.01 -4.98 -0.03 1.88 16 16 C 0.09 1.26 6.57 -82.96 -0.55 0.72 16 17 C -0.07 -0.91 11.67 -16.47 -0.19 -1.10 16 18 N -0.40 -4.95 2.95 -64.40 -0.19 -5.14 16 19 C 0.12 0.92 11.07 -16.45 -0.18 0.74 16 20 C -0.21 -1.27 10.06 -39.79 -0.40 -1.67 16 21 C 0.16 1.31 11.27 -17.07 -0.19 1.11 16 22 N -0.44 -5.74 10.48 -13.70 -0.14 -5.89 16 23 C 0.37 5.61 8.92 -322.52 -2.88 2.74 16 24 N -0.47 -7.75 11.31 -10.66 -0.12 -7.87 16 25 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 26 H 0.05 0.58 7.45 -51.93 -0.39 0.20 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.01 0.18 7.20 -51.93 -0.37 -0.20 16 31 H 0.03 0.65 7.18 -51.93 -0.37 0.28 16 32 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 33 H 0.34 5.57 8.46 -39.29 -0.33 5.24 16 34 H 0.05 0.62 7.44 -51.93 -0.39 0.23 16 35 H 0.09 1.13 8.06 -51.93 -0.42 0.71 16 36 H 0.19 1.99 8.06 -52.49 -0.42 1.56 16 37 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.16 0.31 8.06 -52.49 -0.42 -0.11 16 39 H 0.18 0.67 8.06 -52.49 -0.42 0.24 16 LS Contribution 328.49 15.07 4.95 4.95 Total: -1.00 -36.74 328.49 -10.58 -47.32 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.64 Total: 0.93 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -4.92 Total: -12.47 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.29 Total: -58.37 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.74 -10.58 -47.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.037 kcal (2) G-P(sol) polarization free energy of solvation -36.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds