Wall clock time and date at job start Mon Mar 30 2020 01:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08995 * 109.47051 * 2 1 4 4 C 1.53007 * 109.46827 * 240.00152 * 2 1 3 5 5 C 1.52995 * 109.46508 * 175.00205 * 4 2 1 6 6 C 1.50702 * 109.46806 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00188 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00103 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00104 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99857 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47310 * 90.00063 * 10 8 6 12 12 H 1.48497 * 109.47499 * 210.00173 * 10 8 6 13 13 H 1.48498 * 109.47344 * 330.00016 * 10 8 6 14 14 N 1.46894 * 109.46929 * 120.00513 * 2 1 3 15 15 C 1.46901 * 111.00154 * 275.00007 * 14 2 1 16 16 C 1.50693 * 109.47821 * 180.02562 * 15 14 2 17 17 C 1.35005 * 125.68771 * 94.99129 * 16 15 14 18 18 N 1.36839 * 107.09910 * 179.97438 * 17 16 15 19 19 C 1.36446 * 132.73863 * 179.97438 * 18 17 16 20 20 C 1.35586 * 119.07914 * 179.97438 * 19 18 17 21 21 C 1.40203 * 119.32022 * 0.04133 * 20 19 18 22 22 N 1.31224 * 120.38264 * 359.97438 * 21 20 19 23 23 C 1.34084 * 120.91791 * 0.02562 * 22 21 20 24 24 N 1.32524 * 131.94108 * 180.02562 * 23 22 21 25 25 H 1.09003 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.46907 * 299.99789 * 1 2 3 27 27 H 1.09001 * 109.46754 * 60.00135 * 1 2 3 28 28 H 1.08999 * 109.47053 * 294.99669 * 4 2 1 29 29 H 1.08997 * 109.47188 * 55.00356 * 4 2 1 30 30 H 1.08998 * 109.47427 * 299.99836 * 5 4 2 31 31 H 1.09006 * 109.47485 * 60.00194 * 5 4 2 32 32 H 0.97001 * 119.99831 * 179.97438 * 9 8 6 33 33 H 1.00905 * 111.00369 * 38.95044 * 14 2 1 34 34 H 1.08997 * 109.47265 * 59.99516 * 15 14 2 35 35 H 1.09007 * 109.46879 * 300.00549 * 15 14 2 36 36 H 1.07998 * 126.44752 * 359.96834 * 17 16 15 37 37 H 1.08004 * 120.46176 * 359.97438 * 19 18 17 38 38 H 1.07993 * 120.33699 * 180.02562 * 20 19 18 39 39 H 1.08002 * 119.80747 * 180.25506 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0672 -1.3242 -2.5438 7 1 3.3688 -1.8046 -3.2130 8 6 5.4186 -1.3614 -2.8151 9 7 5.8570 -1.9814 -3.8889 10 14 6.6266 -0.5300 -1.6580 11 1 7.0613 -1.4967 -0.6180 12 1 7.8089 -0.0654 -2.4270 13 1 5.9700 0.6332 -1.0091 14 7 2.0197 -0.6926 1.1993 15 6 2.0825 0.2224 2.3469 16 6 2.5885 -0.5217 3.5557 17 6 3.8717 -0.5667 3.9727 18 7 3.9018 -1.3434 5.0989 19 6 4.9121 -1.7294 5.9308 20 6 4.6247 -2.5214 6.9931 21 6 3.2996 -2.9247 7.2102 22 7 2.3465 -2.5396 6.3946 23 6 2.6167 -1.7564 5.3403 24 7 1.8416 -1.2463 4.3941 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.7517 -1.7715 -1.2057 29 1 1.6055 -0.2617 -2.1370 30 1 3.8532 0.4369 -1.3573 31 1 3.9995 -1.0729 -0.4259 32 1 6.8077 -2.0072 -4.0798 33 1 1.4495 -1.4980 1.4099 34 1 1.0872 0.6162 2.5525 35 1 2.7589 1.0461 2.1182 36 1 4.7156 -0.0811 3.5053 37 1 5.9266 -1.4084 5.7458 38 1 5.4085 -2.8386 7.6649 39 1 3.0612 -3.5522 8.0563 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:37 Heat of formation + Delta-G solvation = 75.790767 kcal Electronic energy + Delta-G solvation = -20287.875766 eV Core-core repulsion = 17230.866850 eV Total energy + Delta-G solvation = -3057.008916 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.97881 -39.48856 -38.38890 -35.65171 -35.22771 -33.63920 -31.97081 -31.08085 -29.84566 -27.22122 -26.67926 -24.63236 -24.29321 -22.78073 -21.81025 -21.26978 -19.16382 -18.78420 -18.60427 -17.38941 -17.04843 -16.48851 -16.31156 -15.99741 -15.44355 -15.17130 -14.90295 -14.66560 -14.35494 -13.93918 -13.87052 -13.64323 -13.38870 -13.26329 -13.09889 -12.85064 -12.82008 -12.51400 -11.89953 -11.74057 -11.52080 -11.47392 -11.30746 -11.10972 -10.79880 -10.69751 -10.05128 -9.24006 -9.14619 -8.24086 -6.26469 -0.35287 0.09428 1.37211 1.40659 1.44541 1.54123 1.66327 2.41908 2.56386 2.62000 3.12134 3.32599 3.48102 3.61095 3.79561 4.01553 4.12823 4.21125 4.28795 4.36290 4.45563 4.59457 4.66856 4.75175 4.75913 4.80607 4.93954 5.02774 5.04777 5.22148 5.25477 5.39306 5.46065 5.62213 5.70970 5.72761 5.79721 6.21357 6.36914 6.45776 6.54560 6.82321 6.95225 7.37636 8.93391 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.004487 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.058392 B = 6239.393287 C = 7477.052265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.092 3.908 3 H 0.084 0.916 4 C -0.085 4.085 5 C 0.003 3.997 6 C -0.531 4.531 7 H 0.024 0.976 8 C -0.003 4.003 9 N -0.959 5.959 10 Si 0.958 3.042 11 H -0.270 1.270 12 H -0.287 1.287 13 H -0.242 1.242 14 N -0.685 5.685 15 C 0.146 3.854 16 C 0.058 3.942 17 C -0.075 4.075 18 N -0.405 5.405 19 C 0.098 3.902 20 C -0.195 4.195 21 C 0.177 3.823 22 N -0.490 5.490 23 C 0.352 3.648 24 N -0.516 5.516 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.014 0.986 31 H 0.025 0.975 32 H 0.264 0.736 33 H 0.338 0.662 34 H 0.049 0.951 35 H 0.103 0.897 36 H 0.212 0.788 37 H 0.211 0.789 38 H 0.215 0.785 39 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.749 3.851 27.223 27.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.018 4.018 3 H 0.102 0.898 4 C -0.123 4.123 5 C -0.034 4.034 6 C -0.569 4.569 7 H 0.042 0.958 8 C -0.198 4.198 9 N -0.600 5.600 10 Si 0.782 3.218 11 H -0.195 1.195 12 H -0.213 1.213 13 H -0.165 1.165 14 N -0.316 5.316 15 C 0.016 3.984 16 C -0.074 4.074 17 C -0.207 4.207 18 N -0.082 5.082 19 C -0.032 4.032 20 C -0.217 4.217 21 C -0.009 4.009 22 N -0.203 5.203 23 C 0.003 3.997 24 N -0.240 5.240 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.156 0.844 34 H 0.067 0.933 35 H 0.121 0.879 36 H 0.228 0.772 37 H 0.228 0.772 38 H 0.231 0.769 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -1.727 3.690 26.795 27.103 hybrid contribution 1.129 0.224 -0.229 1.174 sum -0.598 3.914 26.566 26.859 Atomic orbital electron populations 1.22405 0.96059 1.02050 1.02578 1.21581 0.93083 0.97804 0.89320 0.89770 1.21339 0.96238 0.98926 0.95776 1.19354 0.94269 0.95399 0.94411 1.21690 0.92616 1.33874 1.08755 0.95753 1.26096 1.00802 0.95882 0.97048 1.70103 1.15080 1.45930 1.28914 0.85534 0.77542 0.80105 0.78668 1.19500 1.21263 1.16473 1.60538 1.58269 1.09592 1.03158 1.20248 1.00239 0.93465 0.84429 1.21030 0.90290 0.99099 0.96999 1.22847 1.01231 1.05187 0.91462 1.44067 1.10699 1.33367 1.20116 1.23142 0.94628 0.95847 0.89630 1.22401 0.99997 1.00106 0.99174 1.24228 0.88266 0.92882 0.95518 1.67938 1.37194 1.12440 1.02762 1.22092 0.79823 1.00530 0.97291 1.70438 1.32062 1.16318 1.05202 0.92997 0.91909 0.91294 0.94417 0.93003 0.96784 0.95668 0.92742 0.84395 0.93299 0.87883 0.77178 0.77181 0.76852 0.76167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.48 9.16 71.99 0.66 -3.82 16 2 C 0.09 2.85 2.59 44.92 0.12 2.97 16 3 H 0.08 2.47 7.80 -2.39 -0.02 2.45 16 4 C -0.08 -3.43 4.83 30.60 0.15 -3.29 16 5 C 0.00 0.15 3.93 29.85 0.12 0.27 16 6 C -0.53 -32.11 9.66 25.60 0.25 -31.86 16 7 H 0.02 1.62 7.99 -2.91 -0.02 1.60 16 8 C 0.00 -0.18 5.47 84.66 0.46 0.29 16 9 N -0.96 -62.31 13.96 21.45 0.30 -62.01 16 10 Si 0.96 45.54 27.47 68.60 1.88 47.43 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 13 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 14 N -0.68 -21.70 5.69 -495.57 -2.82 -24.52 16 15 C 0.15 3.95 6.01 85.55 0.51 4.46 16 16 C 0.06 1.72 6.57 41.54 0.27 1.99 16 17 C -0.08 -1.88 11.67 83.17 0.97 -0.91 16 18 N -0.41 -9.45 2.95 -357.66 -1.05 -10.50 16 19 C 0.10 1.22 11.07 83.36 0.92 2.14 16 20 C -0.19 -1.44 10.06 22.13 0.22 -1.21 16 21 C 0.18 2.24 11.27 85.26 0.96 3.20 16 22 N -0.49 -12.52 10.48 -197.25 -2.07 -14.58 16 23 C 0.35 10.59 8.92 261.39 2.33 12.92 16 24 N -0.52 -17.68 11.31 -187.65 -2.12 -19.81 16 25 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 26 H 0.06 1.46 7.45 -2.39 -0.02 1.44 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 31 H 0.02 1.23 7.18 -2.38 -0.02 1.21 16 32 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 33 H 0.34 11.19 8.46 -89.69 -0.76 10.43 16 34 H 0.05 1.27 7.44 -2.39 -0.02 1.26 16 35 H 0.10 2.43 8.06 -2.38 -0.02 2.41 16 36 H 0.21 3.97 8.06 -2.91 -0.02 3.94 16 37 H 0.21 0.85 8.06 -2.91 -0.02 0.83 16 38 H 0.21 -0.64 8.06 -2.91 -0.02 -0.67 16 39 H 0.22 0.67 8.06 -2.91 -0.02 0.65 16 Total: -1.00 -85.13 328.49 2.30 -82.83 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.23 Total: 14.01 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 7.95 Total: -12.85 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -7.77 Total: -131.42 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.43 kcal Total: -85.13 2.30 -82.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.620 kcal (2) G-P(sol) polarization free energy of solvation -85.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds