Wall clock time and date at job start Mon Mar 30 2020 03:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38255 * 119.64866 * 2 1 4 4 C 1.38570 * 119.09708 * 179.97438 * 3 2 1 5 5 C 1.38518 * 118.60782 * 0.02562 * 4 3 2 6 6 C 1.38290 * 119.04103 * 0.02562 * 5 4 3 7 7 N 1.31857 * 120.76191 * 359.96711 * 6 5 4 8 8 C 1.51187 * 109.68178 * 180.02562 * 5 4 3 9 9 H 1.09000 * 110.29146 * 223.89183 * 8 5 4 10 10 N 1.46895 * 110.29743 * 101.85365 * 8 5 4 11 11 C 1.46901 * 111.00123 * 86.45350 * 10 8 5 12 12 H 1.09005 * 109.47128 * 324.99589 * 11 10 8 13 13 C 1.52999 * 109.47264 * 85.00048 * 11 10 8 14 14 C 1.53006 * 109.47133 * 205.00218 * 11 10 8 15 15 C 1.52999 * 109.46997 * 64.99917 * 14 11 10 16 16 C 1.50706 * 109.46573 * 180.02562 * 15 14 11 17 17 H 1.07995 * 120.00167 * 359.72054 * 16 15 14 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 89.99430 * 20 18 16 22 22 H 1.48494 * 109.47031 * 209.99977 * 20 18 16 23 23 H 1.48504 * 109.46680 * 329.99678 * 20 18 16 24 24 C 1.54402 * 105.20237 * 342.91890 * 8 5 4 25 25 C 1.51065 * 131.52769 * 180.02562 * 4 3 2 26 26 H 1.08994 * 109.46937 * 270.03191 * 1 2 3 27 27 H 1.08998 * 109.46574 * 30.02679 * 1 2 3 28 28 H 1.08997 * 109.46831 * 150.02301 * 1 2 3 29 29 H 1.08001 * 120.44941 * 359.94451 * 3 2 1 30 30 H 1.08007 * 119.61765 * 179.97438 * 6 5 4 31 31 H 1.00903 * 111.00259 * 322.50294 * 10 8 5 32 32 H 1.08992 * 109.47188 * 59.99864 * 13 11 10 33 33 H 1.09005 * 109.46713 * 180.02562 * 13 11 10 34 34 H 1.09002 * 109.46911 * 300.00028 * 13 11 10 35 35 H 1.09000 * 109.46866 * 304.99704 * 14 11 10 36 36 H 1.09001 * 109.46611 * 184.99821 * 14 11 10 37 37 H 1.09000 * 109.47486 * 60.00167 * 15 14 11 38 38 H 1.09001 * 109.47362 * 299.99445 * 15 14 11 39 39 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 40 40 H 1.08993 * 110.80450 * 144.41559 * 24 8 5 41 41 H 1.08994 * 110.80975 * 267.93371 * 24 8 5 42 42 H 1.09004 * 110.30060 * 315.94050 * 25 4 3 43 43 H 1.08994 * 110.30915 * 78.00600 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1910 1.2015 0.0000 4 6 3.5766 1.1882 0.0005 5 6 4.2281 -0.0342 0.0005 6 6 3.4769 -1.1953 -0.0006 7 7 2.1593 -1.1460 -0.0009 8 6 5.7239 0.1860 0.0018 9 1 6.2057 -0.4876 -0.7069 10 7 6.2682 -0.0204 1.3505 11 6 6.5807 -1.4371 1.5810 12 1 5.8474 -2.0592 1.0676 13 6 7.9786 -1.7455 1.0409 14 6 6.5374 -1.7313 3.0819 15 6 5.1094 -1.5427 3.5976 16 6 5.0670 -1.8319 5.0760 17 1 5.9675 -2.1256 5.5948 18 6 3.8774 -1.7265 5.7651 19 7 3.8403 -1.9794 7.0552 20 14 2.3183 -1.2261 4.8662 21 1 1.6292 -2.4392 4.3574 22 1 1.4195 -0.5013 5.8000 23 1 2.6667 -0.3400 3.7266 24 6 5.9174 1.6542 -0.4351 25 6 4.5890 2.3094 0.0012 26 1 -0.3633 0.0006 1.0276 27 1 -0.3632 0.8898 -0.5143 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6526 2.1378 -0.0009 30 1 3.9753 -2.1535 -0.0010 31 1 5.6344 0.3291 2.0536 32 1 8.7118 -1.1235 1.5543 33 1 8.2102 -2.7968 1.2116 34 1 8.0094 -1.5359 -0.0283 35 1 7.2061 -1.0480 3.6054 36 1 6.8554 -2.7586 3.2600 37 1 4.4407 -2.2260 3.0740 38 1 4.7914 -0.5154 3.4194 39 1 3.0034 -1.9056 7.5400 40 1 6.7613 2.1053 0.0866 41 1 6.0466 1.7230 -1.5151 42 1 4.2974 3.0826 -0.7097 43 1 4.6845 2.7323 1.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:43 Heat of formation + Delta-G solvation = 14.142936 kcal Electronic energy + Delta-G solvation = -21811.463850 eV Core-core repulsion = 18855.322027 eV Total energy + Delta-G solvation = -2956.141823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -40.86818 -37.90031 -35.89741 -33.06421 -32.50180 -31.28175 -30.06939 -29.30676 -27.63881 -25.74965 -24.91711 -23.41419 -21.24321 -20.62860 -20.47886 -19.61677 -17.03159 -16.59863 -16.05894 -15.81238 -15.29830 -14.62505 -14.30337 -14.13629 -14.07965 -13.47053 -13.17388 -12.93009 -12.76656 -12.58124 -12.48017 -12.36522 -12.06919 -11.83264 -11.65045 -11.48220 -11.43557 -11.21508 -11.00309 -10.78943 -10.53534 -9.98532 -9.76673 -9.50360 -9.43408 -9.33806 -9.17758 -8.81497 -8.53896 -8.12528 -6.04830 -4.02336 1.15730 1.34185 3.30994 3.37676 3.42851 3.79457 4.21922 4.28990 4.44828 4.48260 4.57353 4.92483 5.02417 5.06899 5.09558 5.28913 5.36555 5.39928 5.45145 5.51324 5.55219 5.60396 5.66619 5.74425 5.78409 5.91576 5.93696 5.99559 6.01487 6.09903 6.17854 6.22985 6.39659 6.40037 6.41097 6.71798 6.78339 6.84871 7.25254 7.28237 7.48213 7.67754 7.79757 8.09833 8.53868 9.00878 9.58446 11.08587 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.008256 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.413602 B = 3390.817340 C = 4933.781907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.126 3.874 3 C -0.165 4.165 4 C -0.044 4.044 5 C -0.188 4.188 6 C 0.130 3.870 7 N -0.484 5.484 8 C 0.131 3.869 9 H 0.086 0.914 10 N -0.669 5.669 11 C 0.077 3.923 12 H 0.039 0.961 13 C -0.136 4.136 14 C -0.106 4.106 15 C -0.011 4.011 16 C -0.518 4.518 17 H 0.073 0.927 18 C 0.068 3.932 19 N -0.903 5.903 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.269 1.269 24 C -0.109 4.109 25 C -0.086 4.086 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.130 0.870 30 H 0.150 0.850 31 H 0.351 0.649 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.007 0.993 38 H 0.010 0.990 39 H 0.262 0.738 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.097 7.721 -18.475 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.012 4.012 3 C -0.185 4.185 4 C -0.052 4.052 5 C -0.192 4.192 6 C -0.028 4.028 7 N -0.193 5.193 8 C 0.020 3.980 9 H 0.104 0.896 10 N -0.301 5.301 11 C -0.032 4.032 12 H 0.057 0.943 13 C -0.194 4.194 14 C -0.144 4.144 15 C -0.048 4.048 16 C -0.556 4.556 17 H 0.091 0.909 18 C -0.133 4.133 19 N -0.542 5.542 20 Si 0.706 3.294 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.194 1.194 24 C -0.147 4.147 25 C -0.123 4.123 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.148 0.852 30 H 0.167 0.833 31 H 0.173 0.827 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.025 0.975 38 H 0.028 0.972 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.165 7.098 -18.473 19.790 hybrid contribution -1.497 0.560 -0.074 1.600 sum -1.333 7.657 -18.547 20.110 Atomic orbital electron populations 1.20692 0.88896 1.03185 1.03195 1.21235 0.96943 0.88263 0.94751 1.21382 0.93435 0.99179 1.04520 1.20885 0.93644 0.96317 0.94396 1.22365 0.99158 0.94527 1.03139 1.22212 0.88896 0.97603 0.94059 1.67548 1.09449 1.29209 1.13139 1.21004 0.86860 0.97221 0.92886 0.89571 1.60908 1.48311 1.18435 1.02496 1.21703 0.95966 0.87640 0.97923 0.94269 1.21786 0.96986 1.00670 0.99923 1.21667 0.99867 1.01314 0.91578 1.19563 0.92410 0.95641 0.97220 1.21122 0.96514 1.46203 0.91715 0.90936 1.25008 0.98802 0.94777 0.94680 1.69916 1.26821 1.49840 1.07591 0.86804 0.83659 0.79272 0.79700 1.20272 1.21459 1.19404 1.22349 0.97267 0.94317 1.00765 1.21113 0.92742 0.95668 1.02740 0.90390 0.90845 0.90465 0.85219 0.83270 0.82692 0.92152 0.92794 0.93660 0.91837 0.92028 0.97513 0.97196 0.92784 0.88985 0.90872 0.90426 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 10.17 36.01 0.37 -0.83 16 2 C 0.13 1.91 6.78 -82.57 -0.56 1.35 16 3 C -0.17 -2.29 9.75 -39.45 -0.38 -2.67 16 4 C -0.04 -0.61 6.20 -104.22 -0.65 -1.26 16 5 C -0.19 -2.80 5.40 -104.26 -0.56 -3.37 16 6 C 0.13 2.13 10.79 -17.52 -0.19 1.94 16 7 N -0.48 -8.40 10.27 -9.44 -0.10 -8.50 16 8 C 0.13 1.71 2.97 -67.89 -0.20 1.51 16 9 H 0.09 1.06 7.19 -51.93 -0.37 0.68 16 10 N -0.67 -10.20 6.08 -99.92 -0.61 -10.81 16 11 C 0.08 1.23 2.49 -67.71 -0.17 1.06 16 12 H 0.04 0.64 6.56 -51.93 -0.34 0.30 16 13 C -0.14 -1.81 9.40 37.16 0.35 -1.46 16 14 C -0.11 -2.10 4.74 -26.73 -0.13 -2.23 16 15 C -0.01 -0.26 3.87 -27.88 -0.11 -0.37 16 16 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 17 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -28.41 13.96 55.43 0.77 -27.64 16 20 Si 0.88 22.90 27.47 -169.99 -4.67 18.23 16 21 H -0.28 -7.24 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 23 H -0.27 -6.90 6.54 56.52 0.37 -6.53 16 24 C -0.11 -1.15 6.78 -25.26 -0.17 -1.32 16 25 C -0.09 -0.94 6.76 -26.97 -0.18 -1.13 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.15 2.27 7.29 -52.48 -0.38 1.89 16 31 H 0.35 6.20 6.22 -39.29 -0.24 5.96 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 38 H 0.01 0.24 5.48 -51.93 -0.28 -0.04 16 39 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 40 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 341.34 15.07 5.14 5.14 Total: -1.00 -32.56 341.34 -9.53 -42.09 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -7.06 Total: 3.66 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -3.02 Total: -22.17 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.07 Total: -46.95 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.67 Total: 18.23 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.56 -9.53 -42.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.232 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds