Wall clock time and date at job start Mon Mar 30 2020 03:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38255 * 119.64866 * 2 1 4 4 C 1.38570 * 119.09708 * 179.97438 * 3 2 1 5 5 C 1.38518 * 118.60782 * 0.02562 * 4 3 2 6 6 C 1.38290 * 119.04103 * 0.02562 * 5 4 3 7 7 N 1.31857 * 120.76191 * 359.96711 * 6 5 4 8 8 C 1.51187 * 109.68178 * 180.02562 * 5 4 3 9 9 H 1.09000 * 110.29146 * 223.89183 * 8 5 4 10 10 N 1.46895 * 110.29743 * 101.85365 * 8 5 4 11 11 C 1.46901 * 111.00123 * 86.45350 * 10 8 5 12 12 H 1.09005 * 109.47128 * 324.99589 * 11 10 8 13 13 C 1.52999 * 109.47264 * 85.00048 * 11 10 8 14 14 C 1.53006 * 109.47133 * 205.00218 * 11 10 8 15 15 C 1.52999 * 109.46997 * 64.99917 * 14 11 10 16 16 C 1.50706 * 109.46573 * 180.02562 * 15 14 11 17 17 H 1.07995 * 120.00167 * 359.72054 * 16 15 14 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 89.99430 * 20 18 16 22 22 H 1.48494 * 109.47031 * 209.99977 * 20 18 16 23 23 H 1.48504 * 109.46680 * 329.99678 * 20 18 16 24 24 C 1.54402 * 105.20237 * 342.91890 * 8 5 4 25 25 C 1.51065 * 131.52769 * 180.02562 * 4 3 2 26 26 H 1.08994 * 109.46937 * 270.03191 * 1 2 3 27 27 H 1.08998 * 109.46574 * 30.02679 * 1 2 3 28 28 H 1.08997 * 109.46831 * 150.02301 * 1 2 3 29 29 H 1.08001 * 120.44941 * 359.94451 * 3 2 1 30 30 H 1.08007 * 119.61765 * 179.97438 * 6 5 4 31 31 H 1.00903 * 111.00259 * 322.50294 * 10 8 5 32 32 H 1.08992 * 109.47188 * 59.99864 * 13 11 10 33 33 H 1.09005 * 109.46713 * 180.02562 * 13 11 10 34 34 H 1.09002 * 109.46911 * 300.00028 * 13 11 10 35 35 H 1.09000 * 109.46866 * 304.99704 * 14 11 10 36 36 H 1.09001 * 109.46611 * 184.99821 * 14 11 10 37 37 H 1.09000 * 109.47486 * 60.00167 * 15 14 11 38 38 H 1.09001 * 109.47362 * 299.99445 * 15 14 11 39 39 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 40 40 H 1.08993 * 110.80450 * 144.41559 * 24 8 5 41 41 H 1.08994 * 110.80975 * 267.93371 * 24 8 5 42 42 H 1.09004 * 110.30060 * 315.94050 * 25 4 3 43 43 H 1.08994 * 110.30915 * 78.00600 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1910 1.2015 0.0000 4 6 3.5766 1.1882 0.0005 5 6 4.2281 -0.0342 0.0005 6 6 3.4769 -1.1953 -0.0006 7 7 2.1593 -1.1460 -0.0009 8 6 5.7239 0.1860 0.0018 9 1 6.2057 -0.4876 -0.7069 10 7 6.2682 -0.0204 1.3505 11 6 6.5807 -1.4371 1.5810 12 1 5.8474 -2.0592 1.0676 13 6 7.9786 -1.7455 1.0409 14 6 6.5374 -1.7313 3.0819 15 6 5.1094 -1.5427 3.5976 16 6 5.0670 -1.8319 5.0760 17 1 5.9675 -2.1256 5.5948 18 6 3.8774 -1.7265 5.7651 19 7 3.8403 -1.9794 7.0552 20 14 2.3183 -1.2261 4.8662 21 1 1.6292 -2.4392 4.3574 22 1 1.4195 -0.5013 5.8000 23 1 2.6667 -0.3400 3.7266 24 6 5.9174 1.6542 -0.4351 25 6 4.5890 2.3094 0.0012 26 1 -0.3633 0.0006 1.0276 27 1 -0.3632 0.8898 -0.5143 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6526 2.1378 -0.0009 30 1 3.9753 -2.1535 -0.0010 31 1 5.6344 0.3291 2.0536 32 1 8.7118 -1.1235 1.5543 33 1 8.2102 -2.7968 1.2116 34 1 8.0094 -1.5359 -0.0283 35 1 7.2061 -1.0480 3.6054 36 1 6.8554 -2.7586 3.2600 37 1 4.4407 -2.2260 3.0740 38 1 4.7914 -0.5154 3.4194 39 1 3.0034 -1.9056 7.5400 40 1 6.7613 2.1053 0.0866 41 1 6.0466 1.7230 -1.5151 42 1 4.2974 3.0826 -0.7097 43 1 4.6845 2.7323 1.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:40 Heat of formation + Delta-G solvation = -6.150723 kcal Electronic energy + Delta-G solvation = -21812.343849 eV Core-core repulsion = 18855.322027 eV Total energy + Delta-G solvation = -2957.021822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.92030 -39.07367 -37.16701 -35.08629 -33.63616 -32.77410 -31.43202 -30.45821 -28.67486 -27.27079 -26.23105 -24.47990 -23.00709 -21.75678 -21.45481 -21.04955 -19.04333 -17.87352 -17.17160 -17.01001 -16.47536 -16.33243 -15.69615 -15.36264 -15.20660 -14.96558 -14.52851 -14.33359 -14.14776 -13.92034 -13.52250 -13.34935 -13.31308 -13.26175 -13.00820 -12.85359 -12.62436 -12.50213 -12.19422 -12.03768 -11.93154 -11.76751 -11.65223 -11.36187 -11.14947 -10.85388 -10.57563 -10.38299 -9.92823 -9.30987 -8.38360 -6.40218 0.06417 0.26304 1.21321 1.23839 1.33725 2.23372 2.68641 2.96730 3.21586 3.25595 3.40435 3.57745 3.93003 3.99402 4.06241 4.12529 4.24952 4.29871 4.40139 4.47137 4.51089 4.62013 4.68104 4.69934 4.71659 4.84501 4.88540 4.93862 4.98731 5.01835 5.03268 5.09381 5.11700 5.23654 5.29768 5.34976 5.41324 5.48485 5.52708 5.60241 5.74507 6.18357 6.22123 6.34938 6.67940 6.98557 7.23772 8.78655 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.008256 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.413602 B = 3390.817340 C = 4933.781907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.105 3.895 3 C -0.169 4.169 4 C -0.052 4.052 5 C -0.199 4.199 6 C 0.104 3.896 7 N -0.518 5.518 8 C 0.130 3.870 9 H 0.096 0.904 10 N -0.666 5.666 11 C 0.084 3.916 12 H 0.036 0.964 13 C -0.128 4.128 14 C -0.099 4.099 15 C 0.000 4.000 16 C -0.527 4.527 17 H 0.038 0.962 18 C 0.013 3.987 19 N -0.945 5.945 20 Si 0.946 3.054 21 H -0.277 1.277 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.100 4.100 25 C -0.082 4.082 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.160 0.840 30 H 0.147 0.853 31 H 0.336 0.664 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.000 1.000 38 H 0.011 0.989 39 H 0.267 0.733 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.135 9.681 -20.856 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.033 4.033 3 C -0.189 4.189 4 C -0.060 4.060 5 C -0.202 4.202 6 C -0.053 4.053 7 N -0.229 5.229 8 C 0.019 3.981 9 H 0.114 0.886 10 N -0.297 5.297 11 C -0.026 4.026 12 H 0.054 0.946 13 C -0.186 4.186 14 C -0.137 4.137 15 C -0.037 4.037 16 C -0.565 4.565 17 H 0.056 0.944 18 C -0.184 4.184 19 N -0.586 5.586 20 Si 0.771 3.229 21 H -0.203 1.203 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.138 4.138 25 C -0.119 4.119 26 H 0.094 0.906 27 H 0.123 0.877 28 H 0.094 0.906 29 H 0.178 0.822 30 H 0.164 0.836 31 H 0.156 0.844 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.018 0.982 38 H 0.029 0.971 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.123 0.877 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.045 9.056 -20.873 22.753 hybrid contribution -1.392 -0.082 0.707 1.563 sum -1.437 8.974 -20.166 22.119 Atomic orbital electron populations 1.20784 0.86857 1.04716 1.03418 1.21853 0.98560 0.88317 0.94579 1.21762 0.93764 0.99935 1.03427 1.21358 0.94299 0.96997 0.93383 1.22558 1.00136 0.94494 1.03059 1.22342 0.89203 0.98352 0.95393 1.67524 1.10058 1.30789 1.14508 1.21192 0.85801 0.99381 0.91680 0.88587 1.61013 1.47974 1.17429 1.03254 1.21604 0.97784 0.88364 0.94810 0.94612 1.21713 0.94775 1.01072 1.01021 1.21546 0.96716 1.00949 0.94502 1.19417 0.95146 0.95208 0.93946 1.21498 0.95301 1.45495 0.94234 0.94392 1.25840 1.02223 0.94972 0.95379 1.70043 1.27976 1.51356 1.09208 0.85724 0.79591 0.78941 0.78614 1.20267 1.20329 1.18706 1.22362 0.97196 0.92044 1.02160 1.21185 0.91994 0.95340 1.03386 0.90643 0.87719 0.90626 0.82230 0.83582 0.84434 0.92217 0.92186 0.91569 0.92521 0.92483 0.98171 0.97072 0.92430 0.88469 0.88624 0.87685 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.16 10.17 71.24 0.72 -1.43 16 2 C 0.10 3.03 6.78 42.56 0.29 3.32 16 3 C -0.17 -4.26 9.75 22.35 0.22 -4.05 16 4 C -0.05 -1.32 6.20 -19.60 -0.12 -1.44 16 5 C -0.20 -5.62 5.40 -19.63 -0.11 -5.73 16 6 C 0.10 3.39 10.79 84.70 0.91 4.31 16 7 N -0.52 -17.85 10.27 -183.78 -1.89 -19.74 16 8 C 0.13 3.09 2.97 44.80 0.13 3.22 16 9 H 0.10 2.09 7.19 -2.39 -0.02 2.07 16 10 N -0.67 -19.20 6.08 -470.05 -2.86 -22.06 16 11 C 0.08 2.58 2.49 44.92 0.11 2.69 16 12 H 0.04 1.14 6.56 -2.38 -0.02 1.12 16 13 C -0.13 -3.13 9.40 71.98 0.68 -2.46 16 14 C -0.10 -3.92 4.74 30.60 0.15 -3.78 16 15 C 0.00 0.02 3.87 29.85 0.12 0.13 16 16 C -0.53 -31.41 9.66 25.60 0.25 -31.16 16 17 H 0.04 2.46 7.99 -2.91 -0.02 2.43 16 18 C 0.01 0.80 5.47 84.66 0.46 1.27 16 19 N -0.94 -60.73 13.96 21.45 0.30 -60.43 16 20 Si 0.95 47.92 27.47 68.60 1.88 49.80 16 21 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.26 -12.89 6.54 99.48 0.65 -12.24 16 24 C -0.10 -1.75 6.78 31.55 0.21 -1.54 16 25 C -0.08 -1.53 6.76 30.44 0.21 -1.32 16 26 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.10 1.52 8.08 -2.39 -0.02 1.50 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 30 H 0.15 4.55 7.29 -2.91 -0.02 4.53 16 31 H 0.34 11.48 6.22 -89.69 -0.56 10.92 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.39 8.14 -2.38 -0.02 1.38 16 34 H 0.07 1.36 7.45 -2.39 -0.02 1.34 16 35 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.00 0.00 7.57 -2.39 -0.02 -0.02 16 38 H 0.01 0.54 5.48 -2.39 -0.01 0.53 16 39 H 0.27 15.99 8.31 -92.70 -0.77 15.22 16 40 H 0.10 1.66 8.08 -2.39 -0.02 1.64 16 41 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -71.69 341.34 2.04 -69.65 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.37 Total: 20.75 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 4.23 Total: -37.97 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -4.45 Total: -102.23 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.88 Total: 49.80 kcal Total: -71.69 2.04 -69.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.503 kcal (2) G-P(sol) polarization free energy of solvation -71.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds