Wall clock time and date at job start Mon Mar 30 2020 03:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38358 * 119.86568 * 2 1 4 4 C 1.37975 * 120.13481 * 179.72831 * 3 2 1 5 5 C 1.39480 * 119.86099 * 0.53918 * 4 3 2 6 6 C 1.48086 * 120.12858 * 179.74927 * 5 4 3 7 7 N 1.37785 * 119.99611 * 179.97438 * 6 5 4 8 8 N 1.30231 * 120.00013 * 359.97438 * 6 5 4 9 9 C 1.46503 * 119.99689 * 174.19914 * 8 6 5 10 10 H 1.08996 * 109.47691 * 5.42097 * 9 8 6 11 11 C 1.52999 * 109.47140 * 125.42437 * 9 8 6 12 12 C 1.53005 * 109.46914 * 245.42192 * 9 8 6 13 13 C 1.53000 * 109.46953 * 65.00189 * 12 9 8 14 14 C 1.50707 * 109.47035 * 180.02562 * 13 12 9 15 15 H 1.08000 * 119.99912 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00082 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00284 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00096 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.47156 * 89.99596 * 18 16 14 20 20 H 1.48500 * 109.47434 * 209.99790 * 18 16 14 21 21 H 1.48501 * 109.47086 * 329.99928 * 18 16 14 22 22 C 1.39434 * 119.73473 * 359.73486 * 5 4 3 23 23 C 1.38008 * 119.86812 * 359.97438 * 22 5 4 24 24 C 1.50698 * 119.93570 * 179.97438 * 23 22 5 25 25 H 1.08997 * 109.47225 * 269.73177 * 1 2 3 26 26 H 1.09005 * 109.47364 * 149.72574 * 1 2 3 27 27 H 1.09003 * 109.46918 * 29.73128 * 1 2 3 28 28 H 1.08001 * 119.93356 * 359.97438 * 3 2 1 29 29 H 1.08001 * 120.06471 * 180.27397 * 4 3 2 30 30 H 0.96995 * 120.00374 * 6.04372 * 7 6 5 31 31 H 0.97001 * 120.00068 * 186.03891 * 7 6 5 32 32 H 1.09006 * 109.47135 * 179.97438 * 11 9 8 33 33 H 1.08998 * 109.47220 * 299.99266 * 11 9 8 34 34 H 1.08993 * 109.47295 * 60.00047 * 11 9 8 35 35 H 1.08999 * 109.46940 * 184.99950 * 12 9 8 36 36 H 1.09001 * 109.46975 * 305.00097 * 12 9 8 37 37 H 1.08999 * 109.47103 * 299.99661 * 13 12 9 38 38 H 1.09001 * 109.47355 * 60.00141 * 13 12 9 39 39 H 0.97002 * 120.00211 * 180.02562 * 17 16 14 40 40 H 1.08003 * 120.06430 * 180.02562 * 22 5 4 41 41 H 1.09001 * 109.46900 * 270.01971 * 24 23 22 42 42 H 1.08997 * 109.47097 * 30.02413 * 24 23 22 43 43 H 1.09002 * 109.46700 * 150.02610 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1998 0.0000 4 6 3.5757 1.2063 0.0057 5 6 4.2758 0.0000 0.0000 6 6 5.7567 0.0001 0.0004 7 7 6.4456 -1.1932 -0.0046 8 7 6.4078 1.1280 0.0056 9 6 7.8672 1.1306 0.1342 10 1 8.2354 0.1049 0.1167 11 6 8.4803 1.9125 -1.0292 12 6 8.2613 1.7915 1.4567 13 6 7.7537 0.9411 2.6229 14 6 8.1414 1.5923 3.9256 15 1 8.6948 2.5197 3.9220 16 6 7.7895 1.0041 5.1219 17 7 8.1282 1.5721 6.2586 18 14 6.8316 -0.5996 5.1282 19 1 7.7798 -1.7426 5.1303 20 1 5.9785 -0.6620 6.3420 21 1 5.9751 -0.6694 3.9170 22 6 3.5759 -1.2059 -0.0057 23 6 2.1958 -1.1995 -0.0053 24 6 1.4377 -2.5019 -0.0121 25 1 -0.3633 -0.0048 1.0276 26 1 -0.3634 -0.8875 -0.5181 27 1 -0.3633 0.8924 -0.5097 28 1 1.6527 2.1333 -0.0004 29 1 4.1123 2.1436 0.0101 30 1 5.9647 -2.0304 -0.0969 31 1 7.4116 -1.1959 0.0840 32 1 9.5661 1.9149 -0.9332 33 1 8.1996 1.4417 -1.9713 34 1 8.1122 2.9383 -1.0117 35 1 9.3467 1.8737 1.5125 36 1 7.8182 2.7858 1.5122 37 1 6.6683 0.8588 2.5672 38 1 8.1968 -0.0533 2.5674 39 1 7.8809 1.1581 7.1003 40 1 4.1126 -2.1431 -0.0097 41 1 1.2550 -2.8105 -1.0414 42 1 2.0241 -3.2662 0.4978 43 1 0.4857 -2.3708 0.5024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:14 Heat of formation + Delta-G solvation = 25.748029 kcal Electronic energy + Delta-G solvation = -20969.454852 eV Core-core repulsion = 18013.816264 eV Total energy + Delta-G solvation = -2955.638588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.76371 -37.84161 -34.80494 -33.09207 -32.66677 -31.93650 -30.44528 -29.41854 -27.74031 -26.45017 -25.17873 -22.82593 -21.90522 -20.93875 -19.86921 -18.63213 -17.39458 -16.79990 -16.47331 -15.35675 -15.09992 -14.80307 -14.40446 -14.21010 -13.65678 -13.18864 -13.15868 -13.01489 -12.98172 -12.63367 -12.55413 -12.42853 -12.18073 -12.07189 -11.73181 -11.43239 -11.22866 -11.11940 -10.96286 -10.84174 -10.66720 -9.92781 -9.70153 -9.47068 -9.09407 -8.85140 -8.79647 -8.58083 -8.47104 -7.70927 -5.98007 -3.94304 1.03099 1.42652 2.98609 3.32331 3.40050 3.47238 3.86268 3.99647 4.46261 4.50966 4.70506 4.78636 4.98402 5.17736 5.20184 5.29295 5.36832 5.41107 5.47500 5.50903 5.62311 5.68826 5.69793 5.75481 5.76474 5.94779 6.02520 6.10619 6.20384 6.36416 6.46932 6.47440 6.53213 6.59993 6.68118 6.81655 6.98644 7.04993 7.25768 7.42569 7.58283 7.86429 7.89348 8.62379 8.66211 9.08075 9.65747 11.15812 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014097 B = 0.005557 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.710864 B = 5037.629160 C = 6083.193775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.079 4.079 3 C -0.123 4.123 4 C -0.066 4.066 5 C -0.042 4.042 6 C 0.423 3.577 7 N -0.891 5.891 8 N -0.567 5.567 9 C 0.075 3.925 10 H 0.033 0.967 11 C -0.133 4.133 12 C -0.092 4.092 13 C -0.009 4.009 14 C -0.515 4.515 15 H 0.071 0.929 16 C 0.066 3.934 17 N -0.906 5.906 18 Si 0.877 3.123 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.265 1.265 22 C -0.099 4.099 23 C -0.095 4.095 24 C -0.113 4.113 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.125 0.875 29 H 0.141 0.859 30 H 0.389 0.611 31 H 0.400 0.600 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.018 0.982 38 H 0.000 1.000 39 H 0.261 0.739 40 H 0.120 0.880 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.289 -7.663 -16.877 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.080 4.080 3 C -0.141 4.141 4 C -0.086 4.086 5 C -0.045 4.045 6 C 0.146 3.854 7 N -0.445 5.445 8 N -0.295 5.295 9 C -0.035 4.035 10 H 0.051 0.949 11 C -0.191 4.191 12 C -0.130 4.130 13 C -0.046 4.046 14 C -0.553 4.553 15 H 0.089 0.911 16 C -0.134 4.134 17 N -0.546 5.546 18 Si 0.705 3.295 19 H -0.206 1.206 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.119 4.119 23 C -0.095 4.095 24 C -0.170 4.170 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.159 0.841 30 H 0.217 0.783 31 H 0.233 0.767 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.018 0.982 39 H 0.071 0.929 40 H 0.138 0.862 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.363 -6.633 -16.730 22.416 hybrid contribution 0.335 -2.004 0.397 2.070 sum -13.029 -8.637 -16.333 22.608 Atomic orbital electron populations 1.20838 0.91376 1.02671 1.02363 1.19860 0.95926 0.92697 0.99530 1.21017 0.94050 0.97487 1.01552 1.21326 0.93484 0.98317 0.95434 1.18322 0.89157 0.93884 1.03100 1.20488 0.90834 0.82963 0.91114 1.43327 1.10499 1.07119 1.83605 1.72626 1.09028 1.22801 1.25018 1.21571 0.87739 0.97440 0.96794 0.94877 1.21724 0.99568 1.00985 0.96803 1.21529 0.99523 1.00041 0.91894 1.19520 0.96404 0.94515 0.94183 1.21183 1.35547 1.09526 0.89010 0.91127 1.25009 0.95573 0.97286 0.95580 1.69918 1.47502 1.39817 0.97347 0.86799 0.80615 0.84399 0.77669 1.20587 1.21479 1.18926 1.20960 0.93595 0.96996 1.00342 1.19559 0.93192 0.94980 1.01792 1.20795 1.00039 0.94055 1.02099 0.91091 0.91431 0.91532 0.85663 0.84071 0.78320 0.76697 0.92608 0.93876 0.92047 0.92602 0.91968 0.96331 0.98197 0.92897 0.86174 0.91326 0.91622 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.18 36.00 0.33 -0.61 16 2 C -0.08 -0.90 5.88 -104.55 -0.62 -1.51 16 3 C -0.12 -1.52 9.68 -39.63 -0.38 -1.90 16 4 C -0.07 -0.97 9.58 -39.22 -0.38 -1.34 16 5 C -0.04 -0.65 5.87 -104.95 -0.62 -1.26 16 6 C 0.42 7.03 7.61 -154.31 -1.17 5.86 16 7 N -0.89 -12.38 8.83 32.48 0.29 -12.09 16 8 N -0.57 -10.46 8.74 -52.00 -0.45 -10.92 16 9 C 0.08 1.36 2.90 -67.93 -0.20 1.16 16 10 H 0.03 0.57 5.35 -51.93 -0.28 0.29 16 11 C -0.13 -2.03 9.52 37.16 0.35 -1.68 16 12 C -0.09 -1.99 4.83 -26.73 -0.13 -2.12 16 13 C -0.01 -0.23 3.93 -27.88 -0.11 -0.34 16 14 C -0.51 -15.51 9.66 -34.44 -0.33 -15.84 16 15 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 17 N -0.91 -29.04 13.96 55.43 0.77 -28.27 16 18 Si 0.88 22.91 27.47 -169.99 -4.67 18.25 16 19 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 21 H -0.26 -6.80 6.54 56.52 0.37 -6.43 16 22 C -0.10 -1.26 9.20 -39.22 -0.36 -1.62 16 23 C -0.10 -1.09 5.87 -104.68 -0.61 -1.70 16 24 C -0.11 -0.94 9.18 36.00 0.33 -0.61 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.46 6.68 -51.93 -0.35 0.12 16 27 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 28 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 29 H 0.14 2.18 7.56 -52.49 -0.40 1.78 16 30 H 0.39 4.26 6.96 -40.82 -0.28 3.97 16 31 H 0.40 5.57 6.17 -40.82 -0.25 5.32 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.02 0.50 6.66 -51.93 -0.35 0.15 16 38 H 0.00 -0.01 7.57 -51.93 -0.39 -0.40 16 39 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 40 H 0.12 1.26 6.43 -52.48 -0.34 0.93 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 43 H 0.07 0.51 6.69 -51.93 -0.35 0.16 16 LS Contribution 345.70 15.07 5.21 5.21 Total: -1.00 -34.32 345.70 -9.63 -43.95 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.79 Total: 5.47 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -3.99 Total: -21.60 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.61 Total: -51.28 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.67 Total: 18.25 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.32 -9.63 -43.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.701 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds