Wall clock time and date at job start Mon Mar 30 2020 03:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38358 * 119.86568 * 2 1 4 4 C 1.37975 * 120.13481 * 179.72831 * 3 2 1 5 5 C 1.39480 * 119.86099 * 0.53918 * 4 3 2 6 6 C 1.48086 * 120.12858 * 179.74927 * 5 4 3 7 7 N 1.37785 * 119.99611 * 179.97438 * 6 5 4 8 8 N 1.30231 * 120.00013 * 359.97438 * 6 5 4 9 9 C 1.46503 * 119.99689 * 174.19914 * 8 6 5 10 10 H 1.08996 * 109.47691 * 5.42097 * 9 8 6 11 11 C 1.52999 * 109.47140 * 125.42437 * 9 8 6 12 12 C 1.53005 * 109.46914 * 245.42192 * 9 8 6 13 13 C 1.53000 * 109.46953 * 65.00189 * 12 9 8 14 14 C 1.50707 * 109.47035 * 180.02562 * 13 12 9 15 15 H 1.08000 * 119.99912 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00082 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00284 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00096 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.47156 * 89.99596 * 18 16 14 20 20 H 1.48500 * 109.47434 * 209.99790 * 18 16 14 21 21 H 1.48501 * 109.47086 * 329.99928 * 18 16 14 22 22 C 1.39434 * 119.73473 * 359.73486 * 5 4 3 23 23 C 1.38008 * 119.86812 * 359.97438 * 22 5 4 24 24 C 1.50698 * 119.93570 * 179.97438 * 23 22 5 25 25 H 1.08997 * 109.47225 * 269.73177 * 1 2 3 26 26 H 1.09005 * 109.47364 * 149.72574 * 1 2 3 27 27 H 1.09003 * 109.46918 * 29.73128 * 1 2 3 28 28 H 1.08001 * 119.93356 * 359.97438 * 3 2 1 29 29 H 1.08001 * 120.06471 * 180.27397 * 4 3 2 30 30 H 0.96995 * 120.00374 * 6.04372 * 7 6 5 31 31 H 0.97001 * 120.00068 * 186.03891 * 7 6 5 32 32 H 1.09006 * 109.47135 * 179.97438 * 11 9 8 33 33 H 1.08998 * 109.47220 * 299.99266 * 11 9 8 34 34 H 1.08993 * 109.47295 * 60.00047 * 11 9 8 35 35 H 1.08999 * 109.46940 * 184.99950 * 12 9 8 36 36 H 1.09001 * 109.46975 * 305.00097 * 12 9 8 37 37 H 1.08999 * 109.47103 * 299.99661 * 13 12 9 38 38 H 1.09001 * 109.47355 * 60.00141 * 13 12 9 39 39 H 0.97002 * 120.00211 * 180.02562 * 17 16 14 40 40 H 1.08003 * 120.06430 * 180.02562 * 22 5 4 41 41 H 1.09001 * 109.46900 * 270.01971 * 24 23 22 42 42 H 1.08997 * 109.47097 * 30.02413 * 24 23 22 43 43 H 1.09002 * 109.46700 * 150.02610 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1998 0.0000 4 6 3.5757 1.2063 0.0057 5 6 4.2758 0.0000 0.0000 6 6 5.7567 0.0001 0.0004 7 7 6.4456 -1.1932 -0.0046 8 7 6.4078 1.1280 0.0056 9 6 7.8672 1.1306 0.1342 10 1 8.2354 0.1049 0.1167 11 6 8.4803 1.9125 -1.0292 12 6 8.2613 1.7915 1.4567 13 6 7.7537 0.9411 2.6229 14 6 8.1414 1.5923 3.9256 15 1 8.6948 2.5197 3.9220 16 6 7.7895 1.0041 5.1219 17 7 8.1282 1.5721 6.2586 18 14 6.8316 -0.5996 5.1282 19 1 7.7798 -1.7426 5.1303 20 1 5.9785 -0.6620 6.3420 21 1 5.9751 -0.6694 3.9170 22 6 3.5759 -1.2059 -0.0057 23 6 2.1958 -1.1995 -0.0053 24 6 1.4377 -2.5019 -0.0121 25 1 -0.3633 -0.0048 1.0276 26 1 -0.3634 -0.8875 -0.5181 27 1 -0.3633 0.8924 -0.5097 28 1 1.6527 2.1333 -0.0004 29 1 4.1123 2.1436 0.0101 30 1 5.9647 -2.0304 -0.0969 31 1 7.4116 -1.1959 0.0840 32 1 9.5661 1.9149 -0.9332 33 1 8.1996 1.4417 -1.9713 34 1 8.1122 2.9383 -1.0117 35 1 9.3467 1.8737 1.5125 36 1 7.8182 2.7858 1.5122 37 1 6.6683 0.8588 2.5672 38 1 8.1968 -0.0533 2.5674 39 1 7.8809 1.1581 7.1003 40 1 4.1126 -2.1431 -0.0097 41 1 1.2550 -2.8105 -1.0414 42 1 2.0241 -3.2662 0.4978 43 1 0.4857 -2.3708 0.5024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:13 Heat of formation + Delta-G solvation = 4.835966 kcal Electronic energy + Delta-G solvation = -20970.361667 eV Core-core repulsion = 18013.816264 eV Total energy + Delta-G solvation = -2956.545403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.73760 -39.08437 -36.31275 -34.80443 -33.92981 -32.91070 -32.14531 -30.83787 -28.54945 -27.33844 -27.07578 -23.98991 -22.87086 -22.69358 -21.27191 -19.88838 -18.92531 -18.53664 -17.79037 -16.41434 -16.25388 -16.12443 -15.85134 -15.29084 -15.06576 -14.84396 -14.53842 -14.26520 -14.01409 -13.90726 -13.55885 -13.37517 -13.32527 -13.29503 -12.94418 -12.91003 -12.75266 -12.32254 -12.22877 -11.98688 -11.86205 -11.79945 -11.68576 -11.40430 -11.28517 -10.81652 -10.14523 -9.75294 -9.54430 -8.93320 -8.34577 -6.37883 0.01880 0.48097 1.24869 1.29461 1.42264 1.85044 2.30080 2.75640 2.95265 3.00199 3.34033 3.88282 3.95615 3.99067 4.10397 4.28705 4.40435 4.40512 4.45571 4.55467 4.66246 4.74430 4.82168 4.83575 4.87734 4.90361 4.95402 4.96584 4.99741 5.09486 5.17207 5.28217 5.33743 5.36432 5.47052 5.53261 5.55449 5.61684 5.65041 5.71197 6.04262 6.10861 6.24774 6.69127 6.83338 7.26289 7.44538 8.82620 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014097 B = 0.005557 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.710864 B = 5037.629160 C = 6083.193775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.079 4.079 3 C -0.130 4.130 4 C -0.088 4.088 5 C -0.074 4.074 6 C 0.425 3.575 7 N -0.881 5.881 8 N -0.607 5.607 9 C 0.080 3.920 10 H 0.045 0.955 11 C -0.125 4.125 12 C -0.086 4.086 13 C 0.006 3.994 14 C -0.533 4.533 15 H 0.029 0.971 16 C 0.006 3.994 17 N -0.950 5.950 18 Si 0.952 3.048 19 H -0.261 1.261 20 H -0.281 1.281 21 H -0.258 1.258 22 C -0.102 4.102 23 C -0.099 4.099 24 C -0.112 4.112 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.142 0.858 29 H 0.121 0.879 30 H 0.404 0.596 31 H 0.401 0.599 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.040 0.960 37 H 0.007 0.993 38 H 0.009 0.991 39 H 0.267 0.733 40 H 0.141 0.859 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.447 -10.654 -18.151 26.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.080 4.080 3 C -0.148 4.148 4 C -0.108 4.108 5 C -0.076 4.076 6 C 0.148 3.852 7 N -0.436 5.436 8 N -0.336 5.336 9 C -0.031 4.031 10 H 0.063 0.937 11 C -0.183 4.183 12 C -0.124 4.124 13 C -0.032 4.032 14 C -0.571 4.571 15 H 0.048 0.952 16 C -0.190 4.190 17 N -0.591 5.591 18 Si 0.775 3.225 19 H -0.186 1.186 20 H -0.207 1.207 21 H -0.182 1.182 22 C -0.122 4.122 23 C -0.099 4.099 24 C -0.168 4.168 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.159 0.841 29 H 0.139 0.861 30 H 0.234 0.766 31 H 0.234 0.766 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.025 0.975 38 H 0.028 0.972 39 H 0.076 0.924 40 H 0.158 0.842 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.520 -9.650 -18.022 25.667 hybrid contribution 0.945 -1.020 0.813 1.611 sum -14.574 -10.671 -17.209 24.948 Atomic orbital electron populations 1.20916 0.88870 1.04150 1.03201 1.20299 0.97791 0.92181 0.97706 1.21253 0.93229 0.99033 1.01321 1.21323 0.94677 0.97711 0.97127 1.18482 0.88608 0.95043 1.05459 1.20835 0.91698 0.83258 0.89442 1.43275 1.10566 1.07175 1.82598 1.72656 1.08821 1.24125 1.27995 1.21440 0.88453 0.97920 0.95307 0.93686 1.21653 1.00197 1.00136 0.96301 1.21416 0.99265 0.98669 0.93084 1.19335 0.95530 0.95038 0.93260 1.21529 1.35371 1.08592 0.91626 0.95222 1.25984 0.96600 1.01523 0.94920 1.70066 1.48861 1.41910 0.98236 0.85632 0.79295 0.79537 0.78016 1.18557 1.20670 1.18203 1.21233 0.94439 0.96790 0.99699 1.20010 0.92976 0.96547 1.00389 1.20872 1.00204 0.92317 1.03454 0.90373 0.89636 0.90500 0.84058 0.86111 0.76551 0.76646 0.91195 0.92526 0.92950 0.92469 0.94134 0.97513 0.97234 0.92441 0.84175 0.89661 0.90965 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 9.18 71.23 0.65 -0.83 16 2 C -0.08 -1.59 5.88 -19.82 -0.12 -1.71 16 3 C -0.13 -3.11 9.68 22.24 0.22 -2.90 16 4 C -0.09 -2.64 9.58 22.51 0.22 -2.43 16 5 C -0.07 -2.20 5.87 -20.08 -0.12 -2.32 16 6 C 0.42 13.86 7.61 136.51 1.04 14.89 16 7 N -0.88 -22.89 8.83 -51.16 -0.45 -23.35 16 8 N -0.61 -22.56 8.74 -318.43 -2.78 -25.34 16 9 C 0.08 2.85 2.90 44.99 0.13 2.98 16 10 H 0.05 1.48 5.35 -2.39 -0.01 1.47 16 11 C -0.13 -3.74 9.52 71.98 0.69 -3.06 16 12 C -0.09 -3.82 4.83 30.60 0.15 -3.68 16 13 C 0.01 0.30 3.93 29.85 0.12 0.41 16 14 C -0.53 -33.16 9.66 25.60 0.25 -32.91 16 15 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 16 C 0.01 0.40 5.47 84.65 0.46 0.86 16 17 N -0.95 -62.19 13.96 21.44 0.30 -61.89 16 18 Si 0.95 47.17 27.47 68.60 1.88 49.05 16 19 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 21 H -0.26 -12.41 6.54 99.48 0.65 -11.76 16 22 C -0.10 -2.38 9.20 22.50 0.21 -2.17 16 23 C -0.10 -1.98 5.87 -19.90 -0.12 -2.10 16 24 C -0.11 -1.42 9.18 71.24 0.65 -0.76 16 25 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 0.81 6.68 -2.38 -0.02 0.80 16 27 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 28 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.12 3.99 7.56 -2.91 -0.02 3.96 16 30 H 0.40 7.83 6.96 -92.71 -0.65 7.18 16 31 H 0.40 10.38 6.17 -92.71 -0.57 9.80 16 32 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.01 0.35 6.66 -2.39 -0.02 0.34 16 38 H 0.01 0.46 7.57 -2.39 -0.02 0.45 16 39 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 40 H 0.14 2.54 6.43 -2.91 -0.02 2.52 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 43 H 0.08 0.84 6.69 -2.39 -0.02 0.83 16 Total: -1.00 -76.13 345.70 3.11 -73.02 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -0.26 Total: 24.22 kcal Atomic # 6 Polarization: -40.14 SS G_CDS: 4.42 Total: -35.72 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -2.93 Total: -110.58 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.88 Total: 49.05 kcal Total: -76.13 3.11 -73.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.860 kcal (2) G-P(sol) polarization free energy of solvation -76.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds