Wall clock time and date at job start Mon Mar 30 2020 03:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38233 * 120.53421 * 2 1 4 4 N 1.31617 * 120.68120 * 179.76166 * 3 2 1 5 5 C 1.32462 * 122.17821 * 0.64899 * 4 3 2 6 6 C 1.37775 * 120.27893 * 359.53747 * 5 4 3 7 7 C 1.38489 * 120.53295 * 180.28168 * 2 1 3 8 8 C 1.50483 * 122.14425 * 180.30816 * 6 5 4 9 9 N 1.46666 * 110.46756 * 342.67006 * 8 6 5 10 10 C 1.46893 * 111.00148 * 288.86538 * 9 8 6 11 11 H 1.09001 * 109.47237 * 36.14792 * 10 9 8 12 12 C 1.53008 * 109.47163 * 156.14738 * 10 9 8 13 13 C 1.53008 * 109.47237 * 276.14467 * 10 9 8 14 14 C 1.52997 * 109.46909 * 61.05428 * 13 10 9 15 15 C 1.50691 * 109.47420 * 173.85895 * 14 13 10 16 16 H 1.08007 * 119.99793 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00377 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99789 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00060 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47256 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47390 * 119.99887 * 19 17 15 22 22 H 1.48502 * 109.47223 * 239.99938 * 19 17 15 23 23 C 1.47160 * 110.21580 * 52.26144 * 9 8 6 24 24 C 1.50825 * 118.31175 * 179.42225 * 5 4 3 25 25 H 1.09003 * 109.46981 * 269.72270 * 1 2 3 26 26 H 1.08997 * 109.47315 * 149.72007 * 1 2 3 27 27 H 1.08999 * 109.46952 * 29.71941 * 1 2 3 28 28 H 1.07999 * 119.65774 * 0.06462 * 3 2 1 29 29 H 1.08000 * 120.64600 * 359.90756 * 7 2 1 30 30 H 1.09003 * 109.30223 * 102.97940 * 8 6 5 31 31 H 1.08993 * 109.30466 * 222.56830 * 8 6 5 32 32 H 1.09001 * 109.46864 * 313.18517 * 12 10 9 33 33 H 1.08998 * 109.47083 * 73.18417 * 12 10 9 34 34 H 1.08996 * 109.47207 * 193.18235 * 12 10 9 35 35 H 1.09000 * 109.47061 * 181.05136 * 13 10 9 36 36 H 1.08999 * 109.47063 * 301.05277 * 13 10 9 37 37 H 1.08998 * 109.46964 * 293.86437 * 14 13 10 38 38 H 1.09001 * 109.47428 * 53.85592 * 14 13 10 39 39 H 0.96998 * 119.99590 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.61992 * 48.47310 * 23 9 8 41 41 H 1.08996 * 109.62559 * 168.84413 * 23 9 8 42 42 H 1.08998 * 109.38815 * 42.91032 * 24 5 4 43 43 H 1.09005 * 109.30643 * 283.15914 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2094 1.1906 0.0000 4 7 3.5255 1.1940 0.0047 5 6 4.2339 0.0747 -0.0031 6 6 3.6000 -1.1485 -0.0070 7 6 2.2106 -1.1928 -0.0059 8 6 4.3629 -2.4456 -0.0090 9 7 5.7541 -2.2217 -0.4157 10 6 5.8392 -1.9011 -1.8466 11 1 4.9783 -1.2983 -2.1358 12 6 7.1249 -1.1172 -2.1181 13 6 5.8508 -3.1971 -2.6599 14 6 4.5536 -3.9684 -2.4087 15 6 4.4967 -5.1664 -3.3210 16 1 5.3053 -5.3588 -4.0107 17 6 3.4126 -6.0170 -3.2752 18 7 2.4283 -5.7831 -2.4350 19 14 3.3426 -7.5026 -4.4056 20 1 4.5646 -7.5414 -5.2484 21 1 3.2633 -8.7414 -3.5907 22 1 2.1439 -7.4056 -5.2768 23 6 6.3572 -1.1559 0.4004 24 6 5.7384 0.1804 -0.0102 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 -0.8874 -0.5182 27 1 -0.3633 0.8925 -0.5095 28 1 1.6725 2.1277 0.0011 29 1 1.6900 -2.1391 -0.0090 30 1 4.3448 -2.8758 0.9924 31 1 3.8936 -3.1386 -0.7072 32 1 7.2300 -0.3241 -1.3778 33 1 7.9806 -1.7894 -2.0544 34 1 7.0800 -0.6797 -3.1154 35 1 5.9328 -2.9597 -3.7206 36 1 6.7012 -3.8082 -2.3576 37 1 4.5233 -4.3001 -1.3709 38 1 3.7006 -3.3194 -2.6077 39 1 1.6658 -6.3817 -2.4026 40 1 6.1556 -1.3440 1.4550 41 1 7.4338 -1.1309 0.2323 42 1 6.0501 0.9542 0.6913 43 1 6.0765 0.4431 -1.0126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172509020.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:56 Heat of formation + Delta-G solvation = 44.366429 kcal Electronic energy + Delta-G solvation = -21970.803014 eV Core-core repulsion = 19015.971781 eV Total energy + Delta-G solvation = -2954.831234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.89317 -38.47024 -34.37057 -33.46975 -32.77009 -31.63518 -30.17221 -29.09283 -26.85398 -25.11212 -24.61681 -23.17209 -22.48453 -21.28532 -20.36298 -18.58459 -16.81110 -16.37918 -16.21727 -15.40760 -15.15925 -14.64099 -14.38408 -14.12351 -13.83488 -13.34082 -12.95768 -12.65905 -12.58222 -12.48045 -12.32807 -12.22494 -11.99251 -11.72058 -11.60892 -11.42891 -11.12405 -10.95001 -10.82703 -10.67236 -10.41521 -10.29431 -9.71877 -9.31465 -9.29141 -9.11283 -8.77550 -8.37052 -8.24475 -7.87441 -5.99212 -3.99250 1.27420 1.49724 3.31643 3.39444 3.43822 3.90325 4.20854 4.47230 4.47947 4.88224 4.93027 5.01108 5.16133 5.23636 5.34654 5.37101 5.40339 5.45738 5.53299 5.59426 5.66363 5.71749 5.86170 5.87966 5.94407 5.99248 6.04707 6.14882 6.18718 6.29771 6.42333 6.45753 6.47261 6.59755 6.70245 6.92206 6.94499 7.19915 7.49545 7.55853 7.68301 7.89226 8.00722 8.16209 8.48269 9.06729 9.64255 11.12049 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016317 B = 0.005980 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.577081 B = 4680.893370 C = 5991.156438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.144 4.144 3 C 0.090 3.910 4 N -0.488 5.488 5 C 0.120 3.880 6 C -0.140 4.140 7 C -0.068 4.068 8 C 0.059 3.941 9 N -0.511 5.511 10 C 0.077 3.923 11 H 0.040 0.960 12 C -0.172 4.172 13 C -0.099 4.099 14 C 0.016 3.984 15 C -0.515 4.515 16 H 0.054 0.946 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.286 1.286 23 C 0.048 3.952 24 C -0.116 4.116 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.149 0.851 29 H 0.139 0.861 30 H 0.084 0.916 31 H 0.142 0.858 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.035 0.965 38 H 0.009 0.991 39 H 0.258 0.742 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.613 12.385 6.728 14.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.146 4.146 3 C -0.069 4.069 4 N -0.196 5.196 5 C -0.016 4.016 6 C -0.143 4.143 7 C -0.094 4.094 8 C -0.069 4.069 9 N -0.232 5.232 10 C -0.031 4.031 11 H 0.058 0.942 12 C -0.229 4.229 13 C -0.137 4.137 14 C -0.020 4.020 15 C -0.554 4.554 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.537 5.537 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.081 4.081 24 C -0.154 4.154 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.166 0.834 29 H 0.157 0.843 30 H 0.102 0.898 31 H 0.159 0.841 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.028 0.972 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.203 12.651 6.853 14.555 hybrid contribution -1.278 -0.803 -0.761 1.690 sum 0.925 11.848 6.092 13.354 Atomic orbital electron populations 1.20687 0.90432 1.03103 1.02236 1.20875 0.97432 0.94239 1.02030 1.22431 0.89720 0.97210 0.97587 1.67433 1.08347 1.31149 1.12716 1.20865 0.96093 0.87863 0.96747 1.21424 0.95160 0.97932 0.99829 1.21552 0.93461 0.98592 0.95828 1.22029 0.87499 0.93396 1.03978 1.62621 1.15858 1.40884 1.03823 1.21827 0.96335 0.97386 0.87502 0.94157 1.22512 0.98347 1.00394 1.01614 1.21655 1.01369 0.93866 0.96852 1.19337 0.91008 0.94244 0.97422 1.21347 1.04374 1.09223 1.20439 0.92803 1.24981 0.95793 0.97891 0.95703 1.69942 1.08846 1.37974 1.36924 0.86587 0.77877 0.83014 0.80830 1.19809 1.21059 1.21179 1.22318 0.99608 0.88122 0.98007 1.21425 0.89551 1.00355 1.04112 0.91230 0.91058 0.91517 0.83396 0.84326 0.89805 0.84090 0.91050 0.92032 0.92717 0.93260 0.92583 0.94664 0.97246 0.93205 0.90904 0.89511 0.90059 0.88358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.05 36.01 0.36 -0.79 16 2 C -0.14 -2.03 5.90 -104.53 -0.62 -2.64 16 3 C 0.09 1.28 10.87 -17.65 -0.19 1.09 16 4 N -0.49 -7.90 10.22 -9.47 -0.10 -7.99 16 5 C 0.12 1.95 6.11 -82.43 -0.50 1.44 16 6 C -0.14 -2.36 5.00 -104.61 -0.52 -2.88 16 7 C -0.07 -1.09 9.48 -39.21 -0.37 -1.47 16 8 C 0.06 1.04 4.94 -5.21 -0.03 1.01 16 9 N -0.51 -8.52 4.80 -228.27 -1.10 -9.62 16 10 C 0.08 1.35 1.73 -67.71 -0.12 1.23 16 11 H 0.04 0.78 6.62 -51.93 -0.34 0.43 16 12 C -0.17 -2.41 7.86 37.16 0.29 -2.11 16 13 C -0.10 -2.07 4.82 -26.73 -0.13 -2.19 16 14 C 0.02 0.41 3.32 -27.89 -0.09 0.31 16 15 C -0.52 -14.43 9.11 -34.45 -0.31 -14.74 16 16 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 19 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 C 0.05 0.65 5.38 -3.75 -0.02 0.63 16 24 C -0.12 -1.58 5.04 -27.89 -0.14 -1.72 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 27 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 28 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.14 2.97 3.70 -51.93 -0.19 2.77 16 32 H 0.07 0.87 3.62 -51.93 -0.19 0.69 16 33 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.04 0.92 5.81 -51.93 -0.30 0.62 16 38 H 0.01 0.25 7.76 -51.93 -0.40 -0.15 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 41 H 0.09 1.03 6.75 -51.93 -0.35 0.68 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.10 1.35 5.02 -51.93 -0.26 1.08 16 LS Contribution 326.83 15.07 4.93 4.93 Total: -1.00 -30.24 326.83 -9.68 -39.92 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.64 Total: 2.87 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -2.49 Total: -21.33 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -0.46 Total: -42.93 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.24 -9.68 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172509020.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.290 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds