Wall clock time and date at job start Mon Mar 30 2020 03:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38233 * 120.53421 * 2 1 4 4 N 1.31617 * 120.68120 * 179.76166 * 3 2 1 5 5 C 1.32462 * 122.17821 * 0.64899 * 4 3 2 6 6 C 1.37775 * 120.27893 * 359.53747 * 5 4 3 7 7 C 1.38489 * 120.53295 * 180.28168 * 2 1 3 8 8 C 1.50483 * 122.14425 * 180.30816 * 6 5 4 9 9 N 1.46666 * 110.46756 * 342.67006 * 8 6 5 10 10 C 1.46893 * 111.00148 * 288.86538 * 9 8 6 11 11 H 1.09001 * 109.47237 * 36.14792 * 10 9 8 12 12 C 1.53008 * 109.47163 * 156.14738 * 10 9 8 13 13 C 1.53008 * 109.47237 * 276.14467 * 10 9 8 14 14 C 1.52997 * 109.46909 * 61.05428 * 13 10 9 15 15 C 1.50691 * 109.47420 * 173.85895 * 14 13 10 16 16 H 1.08007 * 119.99793 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00377 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99789 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00060 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47256 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47390 * 119.99887 * 19 17 15 22 22 H 1.48502 * 109.47223 * 239.99938 * 19 17 15 23 23 C 1.47160 * 110.21580 * 52.26144 * 9 8 6 24 24 C 1.50825 * 118.31175 * 179.42225 * 5 4 3 25 25 H 1.09003 * 109.46981 * 269.72270 * 1 2 3 26 26 H 1.08997 * 109.47315 * 149.72007 * 1 2 3 27 27 H 1.08999 * 109.46952 * 29.71941 * 1 2 3 28 28 H 1.07999 * 119.65774 * 0.06462 * 3 2 1 29 29 H 1.08000 * 120.64600 * 359.90756 * 7 2 1 30 30 H 1.09003 * 109.30223 * 102.97940 * 8 6 5 31 31 H 1.08993 * 109.30466 * 222.56830 * 8 6 5 32 32 H 1.09001 * 109.46864 * 313.18517 * 12 10 9 33 33 H 1.08998 * 109.47083 * 73.18417 * 12 10 9 34 34 H 1.08996 * 109.47207 * 193.18235 * 12 10 9 35 35 H 1.09000 * 109.47061 * 181.05136 * 13 10 9 36 36 H 1.08999 * 109.47063 * 301.05277 * 13 10 9 37 37 H 1.08998 * 109.46964 * 293.86437 * 14 13 10 38 38 H 1.09001 * 109.47428 * 53.85592 * 14 13 10 39 39 H 0.96998 * 119.99590 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.61992 * 48.47310 * 23 9 8 41 41 H 1.08996 * 109.62559 * 168.84413 * 23 9 8 42 42 H 1.08998 * 109.38815 * 42.91032 * 24 5 4 43 43 H 1.09005 * 109.30643 * 283.15914 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2094 1.1906 0.0000 4 7 3.5255 1.1940 0.0047 5 6 4.2339 0.0747 -0.0031 6 6 3.6000 -1.1485 -0.0070 7 6 2.2106 -1.1928 -0.0059 8 6 4.3629 -2.4456 -0.0090 9 7 5.7541 -2.2217 -0.4157 10 6 5.8392 -1.9011 -1.8466 11 1 4.9783 -1.2983 -2.1358 12 6 7.1249 -1.1172 -2.1181 13 6 5.8508 -3.1971 -2.6599 14 6 4.5536 -3.9684 -2.4087 15 6 4.4967 -5.1664 -3.3210 16 1 5.3053 -5.3588 -4.0107 17 6 3.4126 -6.0170 -3.2752 18 7 2.4283 -5.7831 -2.4350 19 14 3.3426 -7.5026 -4.4056 20 1 4.5646 -7.5414 -5.2484 21 1 3.2633 -8.7414 -3.5907 22 1 2.1439 -7.4056 -5.2768 23 6 6.3572 -1.1559 0.4004 24 6 5.7384 0.1804 -0.0102 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 -0.8874 -0.5182 27 1 -0.3633 0.8925 -0.5095 28 1 1.6725 2.1277 0.0011 29 1 1.6900 -2.1391 -0.0090 30 1 4.3448 -2.8758 0.9924 31 1 3.8936 -3.1386 -0.7072 32 1 7.2300 -0.3241 -1.3778 33 1 7.9806 -1.7894 -2.0544 34 1 7.0800 -0.6797 -3.1154 35 1 5.9328 -2.9597 -3.7206 36 1 6.7012 -3.8082 -2.3576 37 1 4.5233 -4.3001 -1.3709 38 1 3.7006 -3.3194 -2.6077 39 1 1.6658 -6.3817 -2.4026 40 1 6.1556 -1.3440 1.4550 41 1 7.4338 -1.1309 0.2323 42 1 6.0501 0.9542 0.6913 43 1 6.0765 0.4431 -1.0126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172509020.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:54 Heat of formation + Delta-G solvation = 26.163674 kcal Electronic energy + Delta-G solvation = -21971.592345 eV Core-core repulsion = 19015.971781 eV Total energy + Delta-G solvation = -2955.620564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.11487 -39.72971 -35.99217 -34.84806 -34.30884 -33.11241 -31.43348 -30.65297 -28.02665 -26.74695 -26.04201 -24.44616 -23.72381 -22.88378 -21.82300 -19.94048 -18.43606 -17.96456 -17.48055 -16.70143 -16.51508 -16.45829 -15.78554 -15.38820 -14.97597 -14.51156 -14.45316 -14.22789 -14.01076 -13.81224 -13.57814 -13.40653 -13.23811 -13.20646 -12.92402 -12.88772 -12.56874 -12.53261 -12.44369 -12.16435 -11.91815 -11.74994 -11.52711 -11.06175 -10.83802 -10.53458 -10.49382 -10.28313 -9.50901 -9.20033 -8.16202 -6.25162 0.10181 0.26068 1.38891 1.39876 1.52326 2.42397 2.72152 2.96521 3.16572 3.33437 3.70048 3.82379 3.87599 4.04928 4.09855 4.14233 4.16497 4.32544 4.35681 4.44551 4.53458 4.61252 4.75829 4.77667 4.79216 4.82841 4.89034 4.94318 4.98691 5.01965 5.07513 5.12071 5.20134 5.32657 5.34245 5.36913 5.42139 5.57116 5.77177 5.82982 5.90073 6.18963 6.25793 6.35064 6.90638 6.97253 7.42591 8.94539 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016317 B = 0.005980 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.577081 B = 4680.893370 C = 5991.156438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.142 4.142 3 C 0.087 3.913 4 N -0.501 5.501 5 C 0.109 3.891 6 C -0.158 4.158 7 C -0.091 4.091 8 C 0.068 3.932 9 N -0.521 5.521 10 C 0.087 3.913 11 H 0.017 0.983 12 C -0.164 4.164 13 C -0.092 4.092 14 C 0.031 3.969 15 C -0.542 4.542 16 H 0.053 0.947 17 C 0.004 3.996 18 N -0.927 5.927 19 Si 0.957 3.043 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.280 1.280 23 C 0.050 3.950 24 C -0.110 4.110 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.183 0.817 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.055 0.945 37 H 0.020 0.980 38 H -0.022 1.022 39 H 0.261 0.739 40 H 0.079 0.921 41 H 0.112 0.888 42 H 0.101 0.899 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.401 13.731 6.788 15.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.144 4.144 3 C -0.071 4.071 4 N -0.209 5.209 5 C -0.027 4.027 6 C -0.161 4.161 7 C -0.118 4.118 8 C -0.060 4.060 9 N -0.242 5.242 10 C -0.021 4.021 11 H 0.035 0.965 12 C -0.221 4.221 13 C -0.130 4.130 14 C -0.006 4.006 15 C -0.580 4.580 16 H 0.071 0.929 17 C -0.193 4.193 18 N -0.567 5.567 19 Si 0.782 3.218 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.206 1.206 23 C -0.078 4.078 24 C -0.149 4.149 25 H 0.106 0.894 26 H 0.081 0.919 27 H 0.108 0.892 28 H 0.200 0.800 29 H 0.144 0.856 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.038 0.962 38 H -0.004 1.004 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.130 0.870 42 H 0.119 0.881 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.005 14.000 6.917 15.902 hybrid contribution -1.611 -1.208 -0.747 2.148 sum 1.394 12.793 6.170 14.271 Atomic orbital electron populations 1.20752 0.87986 1.03835 1.03581 1.21215 0.99213 0.93365 1.00561 1.23036 0.89451 0.98503 0.96157 1.67517 1.09272 1.30938 1.13213 1.21207 0.97466 0.87445 0.96554 1.21390 0.95463 0.97935 1.01336 1.21676 0.93767 0.99242 0.97101 1.21679 0.88279 0.93332 1.02745 1.62563 1.15180 1.42700 1.03765 1.21615 0.97541 0.95384 0.87587 0.96462 1.22463 0.96176 1.00650 1.02819 1.21527 0.98744 0.95252 0.97470 1.19147 0.92088 0.93366 0.95998 1.21788 1.04644 1.10515 1.21097 0.92892 1.25849 0.95389 1.00900 0.97207 1.70072 1.09344 1.39073 1.38205 0.85519 0.78142 0.79240 0.78866 1.18965 1.20342 1.20603 1.22454 1.00628 0.86952 0.97747 1.21447 0.87879 1.00817 1.04745 0.89436 0.91884 0.89214 0.79988 0.85555 0.89662 0.88223 0.88696 0.91248 0.92016 0.93538 0.92585 0.96198 1.00388 0.92982 0.90218 0.86959 0.88092 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.11 10.05 71.24 0.72 -1.39 16 2 C -0.14 -3.93 5.90 -19.80 -0.12 -4.05 16 3 C 0.09 2.35 10.87 84.72 0.92 3.27 16 4 N -0.50 -15.50 10.22 -183.86 -1.88 -17.38 16 5 C 0.11 3.46 6.11 42.39 0.26 3.71 16 6 C -0.16 -5.49 5.00 -19.86 -0.10 -5.59 16 7 C -0.09 -3.09 9.48 22.51 0.21 -2.87 16 8 C 0.07 2.54 4.94 85.53 0.42 2.96 16 9 N -0.52 -17.43 4.80 -876.11 -4.20 -21.63 16 10 C 0.09 3.04 1.73 44.92 0.08 3.12 16 11 H 0.02 0.69 6.62 -2.39 -0.02 0.67 16 12 C -0.16 -4.26 7.86 71.98 0.57 -3.69 16 13 C -0.09 -3.92 4.82 30.60 0.15 -3.77 16 14 C 0.03 1.61 3.32 29.84 0.10 1.71 16 15 C -0.54 -31.29 9.11 25.60 0.23 -31.06 16 16 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 17 C 0.00 0.25 5.46 84.65 0.46 0.72 16 18 N -0.93 -55.63 13.29 21.45 0.28 -55.34 16 19 Si 0.96 44.75 29.54 68.60 2.03 46.77 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 23 C 0.05 1.26 5.38 86.21 0.46 1.72 16 24 C -0.11 -2.79 5.04 29.85 0.15 -2.64 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 27 H 0.09 1.41 8.09 -2.39 -0.02 1.39 16 28 H 0.18 3.50 8.06 -2.91 -0.02 3.48 16 29 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 30 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.10 4.57 3.70 -2.39 -0.01 4.56 16 32 H 0.09 2.02 3.62 -2.39 -0.01 2.01 16 33 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.02 1.11 5.81 -2.39 -0.01 1.10 16 38 H -0.02 -1.29 7.76 -2.39 -0.02 -1.31 16 39 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 40 H 0.08 1.91 8.05 -2.38 -0.02 1.89 16 41 H 0.11 2.27 6.75 -2.39 -0.02 2.26 16 42 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.10 2.51 5.02 -2.38 -0.01 2.50 16 Total: -1.00 -67.11 326.83 1.74 -65.37 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.99 Total: 20.06 kcal Atomic # 6 Polarization: -42.36 SS G_CDS: 4.51 Total: -37.85 kcal Atomic # 7 Polarization: -88.55 SS G_CDS: -5.80 Total: -94.35 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -67.11 1.74 -65.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172509020.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.532 kcal (2) G-P(sol) polarization free energy of solvation -67.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds