Wall clock time and date at job start Mon Mar 30 2020 03:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99890 * 2 1 4 4 H 1.48497 * 109.46926 * 239.99920 * 3 2 1 5 5 H 1.48496 * 109.47173 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46859 * 120.00196 * 3 2 1 7 7 C 1.37876 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00290 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99832 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47229 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47411 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47455 * 300.00374 * 11 10 9 13 13 N 1.46892 * 109.47128 * 179.97438 * 12 11 10 14 14 C 1.46902 * 111.00163 * 155.00059 * 13 12 11 15 15 C 1.53001 * 109.47538 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47293 * 179.97438 * 15 14 13 17 17 C 1.38678 * 120.41675 * 270.25216 * 16 15 14 18 18 C 1.38627 * 118.41930 * 180.24221 * 17 16 15 19 19 C 1.38232 * 119.16085 * 359.75178 * 18 17 16 20 20 N 1.31857 * 120.76541 * 359.97438 * 19 18 17 21 21 C 1.31889 * 121.72235 * 0.02562 * 20 19 18 22 22 C 1.52998 * 109.47117 * 59.99446 * 12 11 10 23 23 C 1.52997 * 109.47411 * 300.00582 * 22 12 11 24 24 H 0.97001 * 120.00082 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47560 * 60.00093 * 9 7 2 26 26 H 1.09009 * 109.47135 * 59.99693 * 10 9 7 27 27 H 1.08998 * 109.47521 * 300.00293 * 10 9 7 28 28 H 1.09002 * 109.47211 * 180.02562 * 11 10 9 29 29 H 1.09001 * 109.47178 * 60.00165 * 11 10 9 30 30 H 1.09001 * 109.46757 * 300.00049 * 12 11 10 31 31 H 1.00899 * 110.99883 * 278.95226 * 13 12 11 32 32 H 1.08999 * 109.46906 * 59.99460 * 14 13 12 33 33 H 1.09009 * 109.46938 * 299.99775 * 14 13 12 34 34 H 1.09001 * 109.46704 * 59.99733 * 15 14 13 35 35 H 1.08996 * 109.46675 * 299.99715 * 15 14 13 36 36 H 1.07994 * 120.78944 * 359.96926 * 17 16 15 37 37 H 1.07997 * 120.42083 * 179.72800 * 18 17 16 38 38 H 1.07999 * 119.61954 * 180.02562 * 19 18 17 39 39 H 1.08002 * 119.61237 * 179.97438 * 21 20 19 40 40 H 1.08995 * 109.47111 * 60.00316 * 22 12 11 41 41 H 1.08999 * 109.47034 * 180.02562 * 22 12 11 42 42 H 1.09009 * 109.46930 * 300.00075 * 23 22 12 43 43 H 1.08994 * 109.47261 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 0.6010 -5.0678 1.2496 13 7 -0.1339 -6.3397 1.2499 14 6 -0.5004 -6.7358 2.6162 15 6 -1.2631 -8.0615 2.5758 16 6 -1.6385 -8.4680 3.9775 17 6 -0.7797 -9.2496 4.7357 18 6 -1.1688 -9.6036 6.0182 19 6 -2.3889 -9.1647 6.4972 20 7 -3.1779 -8.4180 5.7498 21 6 -2.8402 -8.0621 4.5256 22 6 -0.3932 -3.9049 1.2496 23 6 0.3717 -2.5799 1.2490 24 1 -0.4850 0.8400 -0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 2.8720 -3.6043 0.8895 27 1 2.8719 -3.6044 -0.8905 28 1 2.1886 -5.8156 0.0006 29 1 0.8533 -5.0451 -0.8897 30 1 1.2279 -5.0098 2.1394 31 1 -0.9492 -6.2863 0.6579 32 1 -1.1325 -5.9667 3.0601 33 1 0.4029 -6.8539 3.2149 34 1 -0.6312 -8.8307 2.1316 35 1 -2.1663 -7.9429 1.9773 36 1 0.1677 -9.5782 4.3348 37 1 -0.5270 -10.2150 6.6352 38 1 -2.6993 -9.4358 7.4955 39 1 -3.5128 -7.4499 3.9431 40 1 -1.0201 -3.9628 0.3599 41 1 -1.0193 -3.9622 2.1400 42 1 0.9987 -2.5219 2.1388 43 1 -0.3365 -1.7514 1.2494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:13 Heat of formation + Delta-G solvation = 3.958705 kcal Electronic energy + Delta-G solvation = -20480.115837 eV Core-core repulsion = 17523.532393 eV Total energy + Delta-G solvation = -2956.583444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.39122 -38.29517 -35.69776 -33.62057 -32.35928 -31.85723 -29.69435 -29.33256 -27.20364 -24.42327 -23.78353 -23.11433 -21.65813 -21.33226 -20.52701 -18.77078 -17.30906 -16.64257 -16.30292 -15.62564 -15.42299 -14.66417 -14.47515 -14.31707 -13.91770 -13.40416 -13.28885 -13.24388 -13.02978 -12.67116 -12.30310 -12.15694 -11.84273 -11.62656 -11.29310 -11.14799 -10.96897 -10.73746 -10.44423 -10.34426 -10.14561 -10.00119 -9.90010 -9.64724 -9.37674 -9.15151 -8.98984 -8.66544 -8.30919 -7.99920 -5.95444 -4.01597 0.87304 1.05330 3.32902 3.37592 3.40264 3.57092 4.14888 4.34896 4.46025 4.57304 4.70992 4.77212 4.86616 5.04938 5.16231 5.32659 5.37068 5.40631 5.48700 5.61689 5.65861 5.76939 5.87063 5.94501 5.96894 6.14698 6.19081 6.30385 6.37791 6.42461 6.47788 6.66241 6.68337 6.83146 6.93835 7.13939 7.23370 7.37059 7.53621 7.63324 7.75091 7.77536 8.05219 8.18063 8.50677 9.02678 9.62902 11.09912 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.031369 B = 0.003003 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.378118 B = 9323.164747 C = 9729.169964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.109 4.109 11 C -0.100 4.100 12 C 0.091 3.909 13 N -0.690 5.690 14 C 0.065 3.935 15 C -0.076 4.076 16 C -0.127 4.127 17 C -0.073 4.073 18 C -0.172 4.172 19 C 0.088 3.912 20 N -0.485 5.485 21 C 0.101 3.899 22 C -0.143 4.143 23 C -0.105 4.105 24 H 0.259 0.741 25 H 0.024 0.976 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.338 0.662 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.054 0.946 41 H 0.038 0.962 42 H 0.031 0.969 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.373 -18.487 8.366 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.031 3.969 10 C -0.147 4.147 11 C -0.138 4.138 12 C -0.018 4.018 13 N -0.319 5.319 14 C -0.065 4.065 15 C -0.114 4.114 16 C -0.129 4.129 17 C -0.099 4.099 18 C -0.192 4.192 19 C -0.069 4.069 20 N -0.193 5.193 21 C -0.056 4.056 22 C -0.182 4.182 23 C -0.144 4.144 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.155 0.845 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.757 -18.477 8.704 20.767 hybrid contribution 0.549 1.311 -0.013 1.421 sum -3.208 -17.166 8.691 19.506 Atomic orbital electron populations 1.69867 1.05849 1.26350 1.51015 1.24972 0.94837 0.98978 0.95261 0.86712 0.79646 0.83388 0.78565 1.20326 1.21370 1.20374 1.21221 0.92856 0.90850 1.50171 0.92874 1.18644 0.92626 0.91560 0.94098 1.21632 0.98632 0.94399 1.00057 1.21485 0.97856 0.97885 0.96579 1.21631 0.95007 0.86121 0.99088 1.60705 1.28455 1.33276 1.09458 1.21900 0.98759 0.94472 0.91348 1.20544 1.01000 0.98361 0.91491 1.20937 0.95713 0.98441 0.97834 1.21556 0.99147 0.95414 0.93761 1.22154 0.98342 1.01883 0.96774 1.22758 0.90848 0.93870 0.99397 1.67694 1.34133 1.11375 1.06063 1.22734 0.94616 0.96757 0.91526 1.22277 0.98112 0.98055 0.99755 1.21553 0.99470 0.94585 0.98802 0.93082 0.95798 0.93591 0.93373 0.93127 0.92780 0.91325 0.84496 0.95045 0.91265 0.89876 0.90669 0.84737 0.84853 0.82949 0.82856 0.92773 0.94370 0.94986 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 11.32 55.43 0.63 -24.87 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.10 8.56 -34.44 -0.29 -14.39 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.21 2.10 -91.77 -0.19 1.02 16 10 C -0.11 -2.26 5.14 -26.73 -0.14 -2.40 16 11 C -0.10 -1.75 5.53 -26.73 -0.15 -1.90 16 12 C 0.09 1.50 2.47 -67.72 -0.17 1.33 16 13 N -0.69 -9.34 6.25 -106.72 -0.67 -10.01 16 14 C 0.06 0.77 5.47 -3.82 -0.02 0.75 16 15 C -0.08 -0.71 5.63 -27.88 -0.16 -0.87 16 16 C -0.13 -1.24 5.15 -104.48 -0.54 -1.78 16 17 C -0.07 -0.64 9.86 -39.28 -0.39 -1.03 16 18 C -0.17 -1.40 10.11 -39.44 -0.40 -1.80 16 19 C 0.09 0.82 11.18 -17.54 -0.20 0.63 16 20 N -0.48 -5.63 10.36 -13.25 -0.14 -5.77 16 21 C 0.10 1.08 10.86 -17.55 -0.19 0.89 16 22 C -0.14 -2.68 5.17 -26.73 -0.14 -2.82 16 23 C -0.11 -2.45 4.98 -26.73 -0.13 -2.59 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.95 8.14 -51.92 -0.42 0.52 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.19 7.80 -51.93 -0.41 0.78 16 31 H 0.34 4.33 8.47 -39.29 -0.33 4.00 16 32 H 0.03 0.40 7.44 -51.93 -0.39 0.02 16 33 H 0.07 0.85 8.06 -51.92 -0.42 0.43 16 34 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 41 H 0.04 0.67 7.45 -51.93 -0.39 0.29 16 42 H 0.03 0.75 8.14 -51.92 -0.42 0.32 16 43 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 LS Contribution 343.05 15.07 5.17 5.17 Total: -1.00 -29.34 343.05 -10.50 -39.84 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.28 Total: 2.66 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -3.19 Total: -23.38 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: -0.18 Total: -40.64 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.34 -10.50 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.803 kcal (2) G-P(sol) polarization free energy of solvation -29.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds