Wall clock time and date at job start Mon Mar 30 2020 03:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99828 * 2 1 4 4 H 1.48505 * 109.47016 * 270.00558 * 3 2 1 5 5 H 1.48503 * 109.47119 * 30.00208 * 3 2 1 6 6 H 1.48498 * 109.47118 * 150.00369 * 3 2 1 7 7 C 1.37870 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00236 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00201 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47404 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47023 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47267 * 299.99794 * 11 10 9 13 13 N 1.46901 * 109.47187 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99870 * 154.99992 * 13 12 11 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47393 * 180.02562 * 15 14 13 17 17 C 1.38652 * 120.78917 * 269.72046 * 16 15 14 18 18 C 1.38209 * 119.15968 * 179.79427 * 17 16 15 19 19 N 1.31868 * 120.76814 * 0.48538 * 18 17 16 20 20 C 1.31871 * 121.72228 * 359.74546 * 19 18 17 21 21 C 1.38203 * 120.76781 * 0.02562 * 20 19 18 22 22 C 1.53003 * 109.46931 * 60.00150 * 12 11 10 23 23 C 1.52996 * 109.47260 * 299.99693 * 22 12 11 24 24 H 0.96998 * 119.99605 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47233 * 59.99911 * 9 7 2 26 26 H 1.09000 * 109.46837 * 59.99938 * 10 9 7 27 27 H 1.08998 * 109.46944 * 299.99770 * 10 9 7 28 28 H 1.08995 * 109.47174 * 180.02562 * 11 10 9 29 29 H 1.08996 * 109.47449 * 59.99724 * 11 10 9 30 30 H 1.09000 * 109.47284 * 300.00517 * 12 11 10 31 31 H 1.00901 * 111.00067 * 278.95167 * 13 12 11 32 32 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 33 33 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 34 34 H 1.09001 * 109.47393 * 299.99719 * 15 14 13 35 35 H 1.08998 * 109.47408 * 60.00073 * 15 14 13 36 36 H 1.07995 * 120.42106 * 359.97438 * 17 16 15 37 37 H 1.08004 * 119.61038 * 180.25275 * 18 17 16 38 38 H 1.07999 * 119.61835 * 179.97438 * 20 19 18 39 39 H 1.07999 * 120.42010 * 179.97438 * 21 20 19 40 40 H 1.08996 * 109.47234 * 60.00407 * 22 12 11 41 41 H 1.09007 * 109.47106 * 180.02562 * 22 12 11 42 42 H 1.08996 * 109.47580 * 300.00502 * 23 22 12 43 43 H 1.08995 * 109.47412 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6364 -0.0022 12 6 6.0616 -1.9142 -1.2509 13 7 7.5307 -1.9136 -1.2505 14 6 8.0574 -1.7930 -2.6166 15 6 9.5868 -1.7966 -2.5756 16 6 10.1272 -1.6722 -3.9768 17 6 10.3872 -2.8003 -4.7400 18 6 10.8784 -2.6470 -6.0227 19 7 11.1085 -1.4468 -6.5180 20 6 10.8774 -0.3524 -5.8194 21 6 10.3818 -0.4272 -4.5315 22 6 5.5516 -0.4717 -1.2497 23 6 4.0216 -0.4717 -1.2498 24 1 -0.4849 0.8401 0.0004 25 1 3.8753 -0.6804 0.8888 26 1 3.6579 -3.1497 -0.8925 27 1 3.6587 -3.1509 0.8875 28 1 5.9150 -3.6640 -0.0035 29 1 5.9149 -2.1233 0.8881 30 1 5.6983 -2.4273 -2.1413 31 1 7.8918 -1.1813 -0.6577 32 1 7.7083 -2.6337 -3.2161 33 1 7.7076 -0.8607 -3.0598 34 1 9.9362 -0.9561 -1.9760 35 1 9.9362 -2.7291 -2.1325 36 1 10.2054 -3.7861 -4.3382 37 1 11.0795 -3.5206 -6.6250 38 1 11.0786 0.6136 -6.2585 39 1 10.1950 0.4726 -3.9643 40 1 5.9149 0.0414 -0.3594 41 1 5.9146 0.0428 -2.1395 42 1 3.6583 -0.9848 -2.1402 43 1 3.6582 0.5559 -1.2485 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:06 Heat of formation + Delta-G solvation = 11.772872 kcal Electronic energy + Delta-G solvation = -20583.945117 eV Core-core repulsion = 17627.700520 eV Total energy + Delta-G solvation = -2956.244596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.43966 -38.60919 -35.99336 -33.88326 -32.23075 -31.47664 -30.18022 -30.02037 -27.72373 -24.44527 -23.73870 -23.09955 -22.08649 -21.54670 -20.62593 -19.02040 -16.92983 -16.71757 -16.63012 -15.90212 -15.72402 -15.15767 -14.64915 -14.32589 -14.04682 -13.88507 -13.45850 -13.23926 -13.04119 -12.74880 -12.73159 -12.39917 -12.05074 -11.88968 -11.68881 -11.35232 -11.21755 -10.89063 -10.60026 -10.42953 -10.07387 -9.88156 -9.78111 -9.73375 -9.56440 -9.44150 -9.13752 -8.90353 -8.53745 -8.22424 -6.06502 -4.04855 0.85103 0.95769 3.25344 3.36005 3.38686 3.51730 4.03249 4.18948 4.40941 4.44244 4.62733 4.80373 4.84937 4.92044 5.02769 5.14515 5.24556 5.28943 5.36338 5.43187 5.48246 5.60391 5.66820 5.75152 5.80715 5.91425 6.00383 6.11686 6.13245 6.19079 6.21915 6.38734 6.42474 6.51135 6.61554 6.73175 6.90772 7.00465 7.13776 7.31882 7.42741 7.58511 7.69248 7.80338 8.54852 8.98609 9.56765 11.07091 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.028543 B = 0.003310 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.752046 B = 8457.636017 C = 8943.047985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.512 4.512 8 H 0.073 0.927 9 C 0.014 3.986 10 C -0.099 4.099 11 C -0.104 4.104 12 C 0.092 3.908 13 N -0.687 5.687 14 C 0.065 3.935 15 C -0.082 4.082 16 C -0.033 4.033 17 C -0.169 4.169 18 C 0.098 3.902 19 N -0.492 5.492 20 C 0.098 3.902 21 C -0.171 4.171 22 C -0.148 4.148 23 C -0.115 4.115 24 H 0.263 0.737 25 H 0.025 0.975 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.338 0.662 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.136 0.864 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.133 0.867 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.058 0.942 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.280 -2.811 -7.366 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.550 4.550 8 H 0.091 0.909 9 C -0.005 4.005 10 C -0.137 4.137 11 C -0.142 4.142 12 C -0.017 4.017 13 N -0.317 5.317 14 C -0.065 4.065 15 C -0.120 4.120 16 C -0.042 4.042 17 C -0.189 4.189 18 C -0.059 4.059 19 N -0.201 5.201 20 C -0.058 4.058 21 C -0.191 4.191 22 C -0.187 4.187 23 C -0.154 4.154 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.154 0.846 37 H 0.172 0.828 38 H 0.172 0.828 39 H 0.151 0.849 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 22.502 -3.329 -8.203 24.181 hybrid contribution -0.221 1.984 0.539 2.068 sum 22.281 -1.345 -7.664 23.601 Atomic orbital electron populations 1.69909 1.06287 1.26830 1.51187 1.25045 0.94679 0.99038 0.94630 0.86825 0.79871 0.83673 0.77689 1.20830 1.22651 1.19128 1.21115 0.89074 0.94374 1.50396 0.90902 1.19152 0.96347 0.92065 0.92909 1.21442 0.92269 0.98898 1.01096 1.21538 0.96861 0.99360 0.96413 1.21600 0.85123 0.95356 0.99636 1.60693 1.08485 1.52969 1.09511 1.21891 0.92634 1.00656 0.91288 1.20647 0.95708 1.03984 0.91646 1.20335 0.94411 0.93070 0.96339 1.22112 1.01334 0.99610 0.95851 1.22779 0.94629 0.95240 0.93216 1.67677 1.16192 0.98924 1.37335 1.22762 0.94626 0.97254 0.91196 1.22103 1.01527 0.98219 0.97278 1.22296 0.99173 0.96902 1.00332 1.21914 0.91656 1.00223 1.01557 0.92757 0.95717 0.92856 0.92534 0.92468 0.92638 0.90751 0.84459 0.90906 0.95039 0.90635 0.89525 0.84630 0.82786 0.82838 0.84876 0.92500 0.93665 0.92296 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 2 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 3 Si 0.89 22.07 24.37 -169.99 -4.14 17.93 16 4 H -0.28 -6.82 6.87 56.52 0.39 -6.44 16 5 H -0.30 -7.47 7.11 56.52 0.40 -7.06 16 6 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 7 C -0.51 -14.29 9.14 -34.44 -0.31 -14.61 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C 0.01 0.32 1.69 -91.77 -0.16 0.17 16 10 C -0.10 -1.92 5.14 -26.73 -0.14 -2.05 16 11 C -0.10 -1.65 5.53 -26.73 -0.15 -1.79 16 12 C 0.09 1.36 2.47 -67.71 -0.17 1.20 16 13 N -0.69 -8.29 6.25 -106.72 -0.67 -8.96 16 14 C 0.07 0.69 5.47 -3.82 -0.02 0.67 16 15 C -0.08 -0.69 5.65 -27.89 -0.16 -0.85 16 16 C -0.03 -0.29 5.17 -104.32 -0.54 -0.83 16 17 C -0.17 -1.44 9.82 -39.44 -0.39 -1.83 16 18 C 0.10 0.89 11.18 -17.55 -0.20 0.69 16 19 N -0.49 -5.26 10.36 -13.25 -0.14 -5.40 16 20 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 21 C -0.17 -1.50 9.82 -39.44 -0.39 -1.88 16 22 C -0.15 -2.46 5.17 -26.73 -0.14 -2.60 16 23 C -0.12 -2.43 4.69 -26.73 -0.13 -2.55 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.02 0.59 7.20 -51.93 -0.37 0.21 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.15 7.80 -51.93 -0.41 0.74 16 31 H 0.34 3.80 8.47 -39.29 -0.33 3.47 16 32 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 33 H 0.03 0.36 7.44 -51.93 -0.39 -0.03 16 34 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 35 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.15 1.00 8.06 -52.48 -0.42 0.57 16 38 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 41 H 0.04 0.70 7.45 -51.92 -0.39 0.31 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.04 1.01 3.27 -51.93 -0.17 0.84 16 LS Contribution 336.27 15.07 5.07 5.07 Total: -1.00 -31.03 336.27 -9.42 -40.45 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.14 Total: 1.68 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -3.17 Total: -23.73 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: -0.03 Total: -41.39 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.14 Total: 17.93 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.03 -9.42 -40.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.222 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds