Wall clock time and date at job start Mon Mar 30 2020 03:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99828 * 2 1 4 4 H 1.48505 * 109.47016 * 270.00558 * 3 2 1 5 5 H 1.48503 * 109.47119 * 30.00208 * 3 2 1 6 6 H 1.48498 * 109.47118 * 150.00369 * 3 2 1 7 7 C 1.37870 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00236 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00201 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47404 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47023 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47267 * 299.99794 * 11 10 9 13 13 N 1.46901 * 109.47187 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99870 * 154.99992 * 13 12 11 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47393 * 180.02562 * 15 14 13 17 17 C 1.38652 * 120.78917 * 269.72046 * 16 15 14 18 18 C 1.38209 * 119.15968 * 179.79427 * 17 16 15 19 19 N 1.31868 * 120.76814 * 0.48538 * 18 17 16 20 20 C 1.31871 * 121.72228 * 359.74546 * 19 18 17 21 21 C 1.38203 * 120.76781 * 0.02562 * 20 19 18 22 22 C 1.53003 * 109.46931 * 60.00150 * 12 11 10 23 23 C 1.52996 * 109.47260 * 299.99693 * 22 12 11 24 24 H 0.96998 * 119.99605 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47233 * 59.99911 * 9 7 2 26 26 H 1.09000 * 109.46837 * 59.99938 * 10 9 7 27 27 H 1.08998 * 109.46944 * 299.99770 * 10 9 7 28 28 H 1.08995 * 109.47174 * 180.02562 * 11 10 9 29 29 H 1.08996 * 109.47449 * 59.99724 * 11 10 9 30 30 H 1.09000 * 109.47284 * 300.00517 * 12 11 10 31 31 H 1.00901 * 111.00067 * 278.95167 * 13 12 11 32 32 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 33 33 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 34 34 H 1.09001 * 109.47393 * 299.99719 * 15 14 13 35 35 H 1.08998 * 109.47408 * 60.00073 * 15 14 13 36 36 H 1.07995 * 120.42106 * 359.97438 * 17 16 15 37 37 H 1.08004 * 119.61038 * 180.25275 * 18 17 16 38 38 H 1.07999 * 119.61835 * 179.97438 * 20 19 18 39 39 H 1.07999 * 120.42010 * 179.97438 * 21 20 19 40 40 H 1.08996 * 109.47234 * 60.00407 * 22 12 11 41 41 H 1.09007 * 109.47106 * 180.02562 * 22 12 11 42 42 H 1.08996 * 109.47580 * 300.00502 * 23 22 12 43 43 H 1.08995 * 109.47412 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6364 -0.0022 12 6 6.0616 -1.9142 -1.2509 13 7 7.5307 -1.9136 -1.2505 14 6 8.0574 -1.7930 -2.6166 15 6 9.5868 -1.7966 -2.5756 16 6 10.1272 -1.6722 -3.9768 17 6 10.3872 -2.8003 -4.7400 18 6 10.8784 -2.6470 -6.0227 19 7 11.1085 -1.4468 -6.5180 20 6 10.8774 -0.3524 -5.8194 21 6 10.3818 -0.4272 -4.5315 22 6 5.5516 -0.4717 -1.2497 23 6 4.0216 -0.4717 -1.2498 24 1 -0.4849 0.8401 0.0004 25 1 3.8753 -0.6804 0.8888 26 1 3.6579 -3.1497 -0.8925 27 1 3.6587 -3.1509 0.8875 28 1 5.9150 -3.6640 -0.0035 29 1 5.9149 -2.1233 0.8881 30 1 5.6983 -2.4273 -2.1413 31 1 7.8918 -1.1813 -0.6577 32 1 7.7083 -2.6337 -3.2161 33 1 7.7076 -0.8607 -3.0598 34 1 9.9362 -0.9561 -1.9760 35 1 9.9362 -2.7291 -2.1325 36 1 10.2054 -3.7861 -4.3382 37 1 11.0795 -3.5206 -6.6250 38 1 11.0786 0.6136 -6.2585 39 1 10.1950 0.4726 -3.9643 40 1 5.9149 0.0414 -0.3594 41 1 5.9146 0.0428 -2.1395 42 1 3.6583 -0.9848 -2.1402 43 1 3.6582 0.5559 -1.2485 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:03 Heat of formation + Delta-G solvation = -7.922165 kcal Electronic energy + Delta-G solvation = -20584.799158 eV Core-core repulsion = 17627.700520 eV Total energy + Delta-G solvation = -2957.098637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.07962 -39.94544 -37.08141 -35.11625 -33.97588 -32.09002 -31.66145 -31.29125 -28.89414 -26.02620 -24.36364 -24.13989 -23.54700 -22.30211 -22.05752 -20.55881 -18.76436 -17.62130 -17.39656 -17.09301 -16.52004 -16.39484 -15.81331 -15.45615 -14.97943 -14.91714 -14.84921 -14.55702 -14.45456 -14.26598 -13.79471 -13.61875 -13.23124 -13.02160 -12.84773 -12.65164 -12.54093 -12.14823 -12.01754 -11.89219 -11.77847 -11.63608 -11.22368 -10.92622 -10.80165 -10.60723 -10.44932 -10.39209 -10.06394 -9.28144 -8.30322 -6.33291 0.22958 0.30603 1.27656 1.33291 1.44460 2.31414 2.85341 3.05131 3.15456 3.61985 3.82883 3.85860 3.89641 3.98470 4.18419 4.22553 4.27528 4.30028 4.34827 4.49774 4.51281 4.62169 4.70692 4.73473 4.76201 4.79315 4.86720 4.88552 4.97985 4.99720 5.09862 5.16653 5.20155 5.25951 5.37482 5.43680 5.48509 5.61943 5.71605 5.82089 5.82616 6.09987 6.33893 6.52710 6.75285 7.05446 7.32254 8.86986 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.028543 B = 0.003310 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.752046 B = 8457.636017 C = 8943.047985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.006 3.994 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.301 1.301 6 H -0.244 1.244 7 C -0.518 4.518 8 H 0.030 0.970 9 C 0.013 3.987 10 C -0.096 4.096 11 C -0.093 4.093 12 C 0.100 3.900 13 N -0.680 5.680 14 C 0.068 3.932 15 C -0.071 4.071 16 C -0.043 4.043 17 C -0.172 4.172 18 C 0.085 3.915 19 N -0.521 5.521 20 C 0.084 3.916 21 C -0.175 4.175 22 C -0.140 4.140 23 C -0.115 4.115 24 H 0.264 0.736 25 H 0.022 0.978 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.347 0.653 32 H 0.066 0.934 33 H 0.027 0.973 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.153 0.847 37 H 0.173 0.827 38 H 0.171 0.829 39 H 0.150 0.850 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.399 -2.159 -7.397 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.190 4.190 3 Si 0.781 3.219 4 H -0.197 1.197 5 H -0.229 1.229 6 H -0.167 1.167 7 C -0.557 4.557 8 H 0.048 0.952 9 C -0.005 4.005 10 C -0.134 4.134 11 C -0.132 4.132 12 C -0.009 4.009 13 N -0.310 5.310 14 C -0.062 4.062 15 C -0.108 4.108 16 C -0.051 4.051 17 C -0.192 4.192 18 C -0.071 4.071 19 N -0.231 5.231 20 C -0.072 4.072 21 C -0.195 4.195 22 C -0.179 4.179 23 C -0.153 4.153 24 H 0.073 0.927 25 H 0.040 0.960 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.166 0.834 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.170 0.830 37 H 0.190 0.810 38 H 0.188 0.812 39 H 0.168 0.832 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 25.657 -2.693 -8.235 27.080 hybrid contribution -1.259 1.671 0.539 2.160 sum 24.397 -1.023 -7.696 25.603 Atomic orbital electron populations 1.70070 1.08299 1.27902 1.53254 1.25946 0.95436 1.03175 0.94435 0.85764 0.79204 0.78548 0.78397 1.19656 1.22940 1.16730 1.21512 0.92101 0.92732 1.49313 0.95151 1.19125 0.92858 0.94718 0.93841 1.21356 0.95298 0.96355 1.00382 1.21417 0.93586 1.00783 0.97366 1.21398 0.86940 0.93878 0.98733 1.60614 1.06321 1.53435 1.10594 1.21887 0.93990 1.00165 0.90147 1.20536 0.93973 1.04800 0.91526 1.20491 0.94662 0.93332 0.96647 1.22343 1.00782 1.00441 0.95634 1.23160 0.94592 0.95476 0.93889 1.67685 1.17210 0.99820 1.38368 1.23126 0.94689 0.97721 0.91660 1.22324 1.01063 0.98907 0.97203 1.22232 0.95431 0.98571 1.01627 1.21785 0.95158 0.98609 0.99745 0.92704 0.95976 0.93666 0.93373 0.90807 0.91951 0.91282 0.83426 0.91530 0.95461 0.89478 0.89008 0.82971 0.80995 0.81178 0.83239 0.91671 0.91871 0.93239 0.95206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 2 C 0.01 0.37 5.45 84.65 0.46 0.83 16 3 Si 0.95 45.47 24.37 68.60 1.67 47.14 16 4 H -0.27 -12.32 6.87 99.48 0.68 -11.64 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.24 -10.61 6.53 99.48 0.65 -9.96 16 7 C -0.52 -29.82 9.14 25.60 0.23 -29.58 16 8 H 0.03 1.94 7.99 -2.91 -0.02 1.91 16 9 C 0.01 0.60 1.69 -11.54 -0.02 0.59 16 10 C -0.10 -3.64 5.14 30.59 0.16 -3.49 16 11 C -0.09 -2.71 5.53 30.59 0.17 -2.54 16 12 C 0.10 2.65 2.47 44.92 0.11 2.76 16 13 N -0.68 -13.71 6.25 -491.56 -3.07 -16.78 16 14 C 0.07 1.19 5.47 86.30 0.47 1.66 16 15 C -0.07 -0.95 5.65 29.85 0.17 -0.78 16 16 C -0.04 -0.65 5.17 -19.67 -0.10 -0.75 16 17 C -0.17 -2.56 9.82 22.36 0.22 -2.34 16 18 C 0.08 1.41 11.18 84.68 0.95 2.36 16 19 N -0.52 -10.53 10.36 -195.84 -2.03 -12.56 16 20 C 0.08 1.42 11.18 84.68 0.95 2.37 16 21 C -0.18 -2.64 9.82 22.36 0.22 -2.42 16 22 C -0.14 -4.17 5.17 30.59 0.16 -4.01 16 23 C -0.11 -4.63 4.69 30.60 0.14 -4.49 16 24 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 25 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.94 7.80 -2.39 -0.02 1.92 16 31 H 0.35 6.21 8.47 -89.69 -0.76 5.45 16 32 H 0.07 1.28 8.06 -2.39 -0.02 1.26 16 33 H 0.03 0.52 7.44 -2.39 -0.02 0.50 16 34 H 0.09 0.99 8.10 -2.39 -0.02 0.97 16 35 H 0.09 1.17 8.10 -2.39 -0.02 1.15 16 36 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 38 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 39 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 40 H 0.06 1.87 8.13 -2.39 -0.02 1.85 16 41 H 0.06 1.69 7.45 -2.38 -0.02 1.67 16 42 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.03 1.28 3.27 -2.39 -0.01 1.28 16 Total: -1.00 -68.63 336.27 1.30 -67.33 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.14 Total: 15.13 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 4.29 Total: -39.83 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -4.80 Total: -89.78 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.67 Total: 47.14 kcal Total: -68.63 1.30 -67.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.412 kcal (2) G-P(sol) polarization free energy of solvation -68.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds