Wall clock time and date at job start Mon Mar 30 2020 03:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86798 * 119.99901 * 2 1 4 4 H 1.48497 * 109.47582 * 240.00327 * 3 2 1 5 5 H 1.48500 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47133 * 120.00313 * 3 2 1 7 7 C 1.39943 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99950 * 163.55798 * 7 2 1 9 9 C 1.41396 * 120.00167 * 343.56410 * 7 2 1 10 10 C 1.40735 * 120.24405 * 334.16661 * 9 7 2 11 11 C 1.37591 * 119.74560 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.25167 * 359.97438 * 11 10 9 13 13 C 1.38622 * 120.49604 * 359.76369 * 12 11 10 14 14 C 1.37638 * 120.24645 * 0.51074 * 13 12 11 15 15 C 1.50703 * 120.12148 * 179.74503 * 14 13 12 16 16 N 1.46901 * 109.46798 * 259.72715 * 15 14 13 17 17 C 1.46852 * 110.99971 * 190.00521 * 16 15 14 18 18 C 1.53036 * 109.51850 * 174.16817 * 17 16 15 19 19 C 1.53099 * 109.28882 * 59.17882 * 18 17 16 20 20 C 1.53003 * 109.52324 * 182.43976 * 19 18 17 21 21 N 1.46902 * 109.46837 * 294.67639 * 20 19 18 22 22 C 1.53122 * 109.15540 * 302.34055 * 19 18 17 23 23 C 1.46845 * 111.00467 * 65.79492 * 16 15 14 24 24 H 0.97003 * 119.99845 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.12393 * 359.95339 * 10 9 7 26 26 H 1.08003 * 119.87636 * 179.97438 * 11 10 9 27 27 H 1.07996 * 119.75329 * 180.02562 * 12 11 10 28 28 H 1.07999 * 119.87184 * 180.26031 * 13 12 11 29 29 H 1.08993 * 109.46897 * 139.73065 * 15 14 13 30 30 H 1.08990 * 109.47636 * 19.72602 * 15 14 13 31 31 H 1.09009 * 109.45862 * 294.17282 * 17 16 15 32 32 H 1.08993 * 109.46272 * 54.14903 * 17 16 15 33 33 H 1.08994 * 109.50280 * 179.11411 * 18 17 16 34 34 H 1.09006 * 109.50048 * 299.23301 * 18 17 16 35 35 H 1.08994 * 109.57921 * 62.28065 * 19 18 17 36 36 H 1.08997 * 109.47275 * 54.67674 * 20 19 18 37 37 H 1.09000 * 109.47143 * 174.68355 * 20 19 18 38 38 H 1.00901 * 111.00019 * 56.05320 * 21 20 19 39 39 H 1.00905 * 110.99854 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.50502 * 297.71344 * 22 19 18 41 41 H 1.09000 * 109.53204 * 177.61849 * 22 19 18 42 42 H 1.09002 * 109.46098 * 305.85530 * 23 16 15 43 43 H 1.08996 * 109.46288 * 65.82474 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6966 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0549 -1.2309 -0.2653 9 6 1.3444 -2.4116 0.3454 10 6 0.2132 -2.3801 1.1821 11 6 -0.4249 -3.5537 1.5117 12 6 0.0421 -4.7641 1.0225 13 6 1.1522 -4.8065 0.1933 14 6 1.8096 -3.6455 -0.1450 15 6 3.0195 -3.6955 -1.0421 16 7 4.2378 -3.6031 -0.2265 17 6 5.4234 -3.4102 -1.0713 18 6 6.6491 -3.1735 -0.1861 19 6 6.8474 -4.3794 0.7360 20 6 8.0352 -4.1224 1.6656 21 7 9.2691 -4.0417 0.8725 22 6 5.5804 -4.5877 1.5703 23 6 4.3857 -4.7836 0.6343 24 1 -0.4850 0.8401 0.0004 25 1 -0.1523 -1.4384 1.5641 26 1 -1.2930 -3.5320 2.1539 27 1 -0.4652 -5.6803 1.2860 28 1 1.5048 -5.7544 -0.1854 29 1 2.9871 -2.8611 -1.7425 30 1 3.0231 -4.6345 -1.5954 31 1 5.5827 -4.2990 -1.6820 32 1 5.2711 -2.5470 -1.7192 33 1 7.5315 -3.0459 -0.8130 34 1 6.4962 -2.2770 0.4149 35 1 7.0396 -5.2695 0.1371 36 1 7.8834 -3.1835 2.1980 37 1 8.1177 -4.9382 2.3838 38 1 9.1931 -3.3351 0.1563 39 1 10.0687 -3.8719 1.4641 40 1 5.4108 -3.7135 2.1989 41 1 5.6990 -5.4703 2.1988 42 1 3.4797 -4.9180 1.2252 43 1 4.5500 -5.6659 0.0157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205053918.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:47 Heat of formation + Delta-G solvation = 5.655585 kcal Electronic energy + Delta-G solvation = -21659.551806 eV Core-core repulsion = 18703.041944 eV Total energy + Delta-G solvation = -2956.509862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.04926 -37.48362 -35.32293 -33.55842 -32.26932 -30.62063 -29.79478 -29.23620 -26.37927 -25.15413 -23.55715 -22.72994 -21.15676 -20.82762 -19.42513 -19.28947 -17.06768 -16.14411 -15.44719 -15.24061 -14.84322 -14.67497 -14.38925 -14.02414 -13.73455 -13.54466 -13.23488 -12.83265 -12.61739 -12.50641 -11.99094 -11.82895 -11.52071 -11.41236 -11.16923 -11.00662 -10.89084 -10.81387 -10.57718 -10.44991 -10.33851 -10.00903 -9.95988 -9.44281 -9.21691 -9.08940 -8.80441 -7.61349 -7.28506 -7.24169 -6.67641 -4.25061 2.84471 3.01738 3.10342 3.13779 3.30977 3.99333 4.47267 4.55148 4.74864 4.91335 4.97959 5.16568 5.47208 5.54590 5.64478 5.72104 5.81300 5.81459 5.88727 5.99748 6.06231 6.12603 6.18083 6.22807 6.31926 6.36456 6.40435 6.49794 6.54734 6.64711 6.67072 6.91685 7.02184 7.18015 7.29491 7.33714 7.45629 7.69129 7.74513 7.82563 8.02219 8.15093 8.21233 8.39504 8.74788 9.01544 9.08673 10.27045 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.006226 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.822914 B = 4496.071231 C = 5783.194314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.446 4.446 8 H 0.089 0.911 9 C 0.131 3.869 10 C -0.164 4.164 11 C -0.107 4.107 12 C -0.246 4.246 13 C -0.087 4.087 14 C -0.192 4.192 15 C 0.126 3.874 16 N -0.522 5.522 17 C 0.057 3.943 18 C -0.110 4.110 19 C -0.086 4.086 20 C 0.066 3.934 21 N -0.853 5.853 22 C -0.109 4.109 23 C 0.061 3.939 24 H 0.278 0.722 25 H 0.116 0.884 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.013 0.987 31 H 0.022 0.978 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.028 0.972 37 H 0.068 0.932 38 H 0.340 0.660 39 H 0.337 0.663 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.426 -3.869 0.867 12.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.143 4.143 3 Si 0.729 3.271 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.475 4.475 8 H 0.107 0.893 9 C 0.129 3.871 10 C -0.183 4.183 11 C -0.126 4.126 12 C -0.266 4.266 13 C -0.106 4.106 14 C -0.194 4.194 15 C 0.000 4.000 16 N -0.246 5.246 17 C -0.071 4.071 18 C -0.148 4.148 19 C -0.105 4.105 20 C -0.065 4.065 21 N -0.383 5.383 22 C -0.148 4.148 23 C -0.067 4.067 24 H 0.089 0.911 25 H 0.133 0.867 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.031 0.969 31 H 0.040 0.960 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.086 0.914 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 11.024 -4.039 0.934 11.778 hybrid contribution 0.333 1.033 -0.140 1.095 sum 11.357 -3.006 0.795 11.775 Atomic orbital electron populations 1.69836 1.07547 1.29023 1.35984 1.25955 0.94638 1.01238 0.92512 0.86436 0.80136 0.80595 0.79899 1.19146 1.20647 1.18957 1.19679 0.98055 0.90425 1.39371 0.89308 1.17355 0.90349 0.91521 0.87921 1.21340 0.99248 0.96553 1.01178 1.20664 0.98548 0.93503 0.99857 1.20285 1.01841 0.96082 1.08356 1.20363 0.96211 0.95657 0.98348 1.19445 0.99931 0.93656 1.06392 1.20612 0.87314 0.98422 0.93646 1.61928 1.01481 1.38922 1.22282 1.22011 0.90692 0.99820 0.94596 1.21622 0.96826 0.98369 0.98015 1.21216 0.93755 0.98842 0.96667 1.21847 0.89507 0.99838 0.95273 1.58798 1.05006 1.56413 1.18095 1.21594 0.93611 1.01754 0.97824 1.21994 0.98699 0.90511 0.95538 0.91086 0.86657 0.89796 0.89911 0.90060 0.90654 0.96894 0.95972 0.91039 0.92253 0.91285 0.91085 0.95396 0.91352 0.84683 0.85155 0.91075 0.92210 0.89808 0.96296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.61 10.97 55.55 0.61 -20.00 16 2 C 0.07 1.83 5.16 -17.34 -0.09 1.74 16 3 Si 0.90 18.85 29.59 -169.99 -5.03 13.82 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.45 -11.50 8.18 -37.74 -0.31 -11.81 16 8 H 0.09 2.24 6.85 -52.49 -0.36 1.88 16 9 C 0.13 3.42 5.56 -106.83 -0.59 2.83 16 10 C -0.16 -4.28 8.68 -38.87 -0.34 -4.62 16 11 C -0.11 -2.56 10.02 -39.66 -0.40 -2.96 16 12 C -0.25 -5.59 10.05 -39.28 -0.39 -5.99 16 13 C -0.09 -1.95 8.57 -39.66 -0.34 -2.29 16 14 C -0.19 -4.51 4.63 -103.91 -0.48 -4.99 16 15 C 0.13 2.58 4.29 -4.97 -0.02 2.56 16 16 N -0.52 -9.61 4.38 -236.12 -1.03 -10.65 16 17 C 0.06 0.89 5.46 -3.83 -0.02 0.87 16 18 C -0.11 -1.47 5.09 -26.66 -0.14 -1.60 16 19 C -0.09 -1.09 2.46 -90.50 -0.22 -1.32 16 20 C 0.07 0.73 6.25 -3.82 -0.02 0.70 16 21 N -0.85 -8.41 9.62 -10.37 -0.10 -8.51 16 22 C -0.11 -1.56 5.38 -26.65 -0.14 -1.71 16 23 C 0.06 1.03 5.26 -3.84 -0.02 1.01 16 24 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 25 H 0.12 3.12 6.21 -52.49 -0.33 2.79 16 26 H 0.08 1.81 8.06 -52.48 -0.42 1.39 16 27 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.08 1.64 8.03 -52.49 -0.42 1.22 16 29 H 0.08 1.61 7.19 -51.93 -0.37 1.24 16 30 H 0.01 0.25 7.98 -51.93 -0.41 -0.16 16 31 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.07 1.12 8.01 -51.93 -0.42 0.70 16 33 H 0.06 0.68 6.81 -51.93 -0.35 0.32 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.34 3.14 7.32 -39.29 -0.29 2.86 16 39 H 0.34 2.68 9.08 -39.29 -0.36 2.33 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.60 6.32 -51.93 -0.33 1.27 16 43 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 334.27 15.07 5.04 5.04 Total: -1.00 -26.86 334.27 -11.05 -37.91 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -7.00 Total: 9.96 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: -3.53 Total: -27.57 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: -0.53 Total: -39.16 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.86 -11.05 -37.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205053918.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.565 kcal (2) G-P(sol) polarization free energy of solvation -26.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds