Wall clock time and date at job start Mon Mar 30 2020 03:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86798 * 119.99901 * 2 1 4 4 H 1.48497 * 109.47582 * 240.00327 * 3 2 1 5 5 H 1.48500 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47133 * 120.00313 * 3 2 1 7 7 C 1.39943 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99950 * 163.55798 * 7 2 1 9 9 C 1.41396 * 120.00167 * 343.56410 * 7 2 1 10 10 C 1.40735 * 120.24405 * 334.16661 * 9 7 2 11 11 C 1.37591 * 119.74560 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.25167 * 359.97438 * 11 10 9 13 13 C 1.38622 * 120.49604 * 359.76369 * 12 11 10 14 14 C 1.37638 * 120.24645 * 0.51074 * 13 12 11 15 15 C 1.50703 * 120.12148 * 179.74503 * 14 13 12 16 16 N 1.46901 * 109.46798 * 259.72715 * 15 14 13 17 17 C 1.46852 * 110.99971 * 190.00521 * 16 15 14 18 18 C 1.53036 * 109.51850 * 174.16817 * 17 16 15 19 19 C 1.53099 * 109.28882 * 59.17882 * 18 17 16 20 20 C 1.53003 * 109.52324 * 182.43976 * 19 18 17 21 21 N 1.46902 * 109.46837 * 294.67639 * 20 19 18 22 22 C 1.53122 * 109.15540 * 302.34055 * 19 18 17 23 23 C 1.46845 * 111.00467 * 65.79492 * 16 15 14 24 24 H 0.97003 * 119.99845 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.12393 * 359.95339 * 10 9 7 26 26 H 1.08003 * 119.87636 * 179.97438 * 11 10 9 27 27 H 1.07996 * 119.75329 * 180.02562 * 12 11 10 28 28 H 1.07999 * 119.87184 * 180.26031 * 13 12 11 29 29 H 1.08993 * 109.46897 * 139.73065 * 15 14 13 30 30 H 1.08990 * 109.47636 * 19.72602 * 15 14 13 31 31 H 1.09009 * 109.45862 * 294.17282 * 17 16 15 32 32 H 1.08993 * 109.46272 * 54.14903 * 17 16 15 33 33 H 1.08994 * 109.50280 * 179.11411 * 18 17 16 34 34 H 1.09006 * 109.50048 * 299.23301 * 18 17 16 35 35 H 1.08994 * 109.57921 * 62.28065 * 19 18 17 36 36 H 1.08997 * 109.47275 * 54.67674 * 20 19 18 37 37 H 1.09000 * 109.47143 * 174.68355 * 20 19 18 38 38 H 1.00901 * 111.00019 * 56.05320 * 21 20 19 39 39 H 1.00905 * 110.99854 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.50502 * 297.71344 * 22 19 18 41 41 H 1.09000 * 109.53204 * 177.61849 * 22 19 18 42 42 H 1.09002 * 109.46098 * 305.85530 * 23 16 15 43 43 H 1.08996 * 109.46288 * 65.82474 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6966 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0549 -1.2309 -0.2653 9 6 1.3444 -2.4116 0.3454 10 6 0.2132 -2.3801 1.1821 11 6 -0.4249 -3.5537 1.5117 12 6 0.0421 -4.7641 1.0225 13 6 1.1522 -4.8065 0.1933 14 6 1.8096 -3.6455 -0.1450 15 6 3.0195 -3.6955 -1.0421 16 7 4.2378 -3.6031 -0.2265 17 6 5.4234 -3.4102 -1.0713 18 6 6.6491 -3.1735 -0.1861 19 6 6.8474 -4.3794 0.7360 20 6 8.0352 -4.1224 1.6656 21 7 9.2691 -4.0417 0.8725 22 6 5.5804 -4.5877 1.5703 23 6 4.3857 -4.7836 0.6343 24 1 -0.4850 0.8401 0.0004 25 1 -0.1523 -1.4384 1.5641 26 1 -1.2930 -3.5320 2.1539 27 1 -0.4652 -5.6803 1.2860 28 1 1.5048 -5.7544 -0.1854 29 1 2.9871 -2.8611 -1.7425 30 1 3.0231 -4.6345 -1.5954 31 1 5.5827 -4.2990 -1.6820 32 1 5.2711 -2.5470 -1.7192 33 1 7.5315 -3.0459 -0.8130 34 1 6.4962 -2.2770 0.4149 35 1 7.0396 -5.2695 0.1371 36 1 7.8834 -3.1835 2.1980 37 1 8.1177 -4.9382 2.3838 38 1 9.1931 -3.3351 0.1563 39 1 10.0687 -3.8719 1.4641 40 1 5.4108 -3.7135 2.1989 41 1 5.6990 -5.4703 2.1988 42 1 3.4797 -4.9180 1.2252 43 1 4.5500 -5.6659 0.0157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205053918.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:45 Heat of formation + Delta-G solvation = -9.977623 kcal Electronic energy + Delta-G solvation = -21660.229712 eV Core-core repulsion = 18703.041944 eV Total energy + Delta-G solvation = -2957.187769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.41211 -39.13740 -36.50599 -35.43684 -33.51295 -31.90612 -31.47882 -30.92008 -27.81297 -26.87930 -24.96330 -23.95799 -22.76680 -22.30148 -21.11651 -20.50960 -18.96278 -17.30139 -16.97783 -16.50902 -16.31670 -16.04680 -15.76069 -15.56595 -15.17901 -14.89487 -14.61496 -14.35116 -14.02805 -13.85656 -13.38640 -13.34461 -13.00663 -12.87993 -12.85857 -12.70334 -12.41228 -12.33611 -12.06507 -12.06081 -11.61833 -11.31407 -11.27096 -11.10162 -10.99319 -10.91926 -9.58102 -9.21535 -9.16970 -8.94558 -8.54217 -6.20048 1.03768 1.16010 1.39272 1.49222 1.57687 2.24504 2.81845 3.20056 3.63485 3.84369 3.91426 3.93659 4.10288 4.30992 4.36770 4.40069 4.50469 4.54191 4.59784 4.65754 4.70913 4.76151 4.79958 4.83969 4.93856 5.03494 5.07724 5.13816 5.18088 5.26061 5.26800 5.33065 5.42942 5.54373 5.59055 5.82961 6.06972 6.22178 6.25584 6.27914 6.38232 6.46467 6.52718 6.62618 6.82529 7.09769 7.17626 8.42254 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.006226 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.822914 B = 4496.071231 C = 5783.194314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.033 3.967 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.469 4.469 8 H 0.086 0.914 9 C 0.102 3.898 10 C -0.194 4.194 11 C -0.115 4.115 12 C -0.245 4.245 13 C -0.090 4.090 14 C -0.195 4.195 15 C 0.134 3.866 16 N -0.538 5.538 17 C 0.056 3.944 18 C -0.104 4.104 19 C -0.078 4.078 20 C 0.072 3.928 21 N -0.856 5.856 22 C -0.104 4.104 23 C 0.063 3.937 24 H 0.283 0.717 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.059 0.941 30 H 0.025 0.975 31 H 0.032 0.968 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.025 0.975 37 H 0.074 0.926 38 H 0.344 0.656 39 H 0.349 0.651 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.329 -4.730 0.724 14.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.181 4.181 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.499 4.499 8 H 0.104 0.896 9 C 0.099 3.901 10 C -0.214 4.214 11 C -0.134 4.134 12 C -0.264 4.264 13 C -0.109 4.109 14 C -0.196 4.196 15 C 0.008 3.992 16 N -0.262 5.262 17 C -0.072 4.072 18 C -0.141 4.141 19 C -0.097 4.097 20 C -0.059 4.059 21 N -0.387 5.387 22 C -0.142 4.142 23 C -0.065 4.065 24 H 0.094 0.906 25 H 0.113 0.887 26 H 0.121 0.879 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.092 0.908 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 12.940 -4.913 0.794 13.864 hybrid contribution -0.287 1.167 -0.097 1.206 sum 12.653 -3.745 0.697 13.214 Atomic orbital electron populations 1.69904 1.08905 1.30047 1.36945 1.26717 0.95320 1.04281 0.91755 0.85410 0.78841 0.76501 0.79893 1.18363 1.19767 1.18958 1.19807 0.98014 0.91349 1.40743 0.89633 1.17696 0.90917 0.92824 0.88617 1.21318 1.00611 0.96665 1.02771 1.20919 0.99012 0.93374 1.00060 1.20656 1.01689 0.96647 1.07434 1.20675 0.95880 0.96405 0.97955 1.19811 1.00697 0.93241 1.05889 1.20441 0.87486 0.98267 0.93047 1.61838 1.01697 1.39938 1.22769 1.22084 0.90358 0.99968 0.94772 1.21581 0.96569 0.98069 0.97925 1.21122 0.93620 0.98403 0.96512 1.21723 0.89286 0.99933 0.94943 1.58773 1.04920 1.56703 1.18328 1.21546 0.93373 1.01858 0.97462 1.21964 0.98736 0.90291 0.95499 0.90644 0.88661 0.87950 0.87033 0.87437 0.92284 0.95682 0.95023 0.91619 0.89855 0.92625 0.91085 0.95700 0.90775 0.84242 0.83807 0.92708 0.90397 0.92365 0.95389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.32 10.97 21.83 0.24 -44.08 16 2 C 0.03 1.68 5.16 85.26 0.44 2.12 16 3 Si 0.97 39.23 29.59 68.60 2.03 41.26 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 5 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.47 -24.99 8.18 23.46 0.19 -24.79 16 8 H 0.09 4.46 6.85 -2.91 -0.02 4.44 16 9 C 0.10 5.47 5.56 -21.29 -0.12 5.35 16 10 C -0.19 -10.47 8.68 22.73 0.20 -10.27 16 11 C -0.12 -5.53 10.02 22.22 0.22 -5.30 16 12 C -0.25 -10.83 10.05 22.46 0.23 -10.60 16 13 C -0.09 -3.96 8.57 22.22 0.19 -3.77 16 14 C -0.19 -9.20 4.63 -19.41 -0.09 -9.29 16 15 C 0.13 5.50 4.29 85.56 0.37 5.86 16 16 N -0.54 -19.60 4.38 -900.95 -3.95 -23.54 16 17 C 0.06 1.67 5.46 86.32 0.47 2.14 16 18 C -0.10 -2.56 5.09 30.64 0.16 -2.40 16 19 C -0.08 -1.80 2.46 -10.72 -0.03 -1.83 16 20 C 0.07 1.41 6.25 86.30 0.54 1.95 16 21 N -0.86 -14.45 9.62 -186.71 -1.80 -16.25 16 22 C -0.10 -2.83 5.38 30.64 0.16 -2.66 16 23 C 0.06 2.07 5.26 86.32 0.45 2.53 16 24 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 25 H 0.10 5.42 6.21 -2.91 -0.02 5.40 16 26 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 27 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 28 H 0.11 4.09 8.03 -2.91 -0.02 4.07 16 29 H 0.06 2.58 7.19 -2.39 -0.02 2.56 16 30 H 0.03 0.95 7.98 -2.39 -0.02 0.93 16 31 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.07 2.02 8.01 -2.39 -0.02 2.00 16 33 H 0.08 1.67 6.81 -2.39 -0.02 1.66 16 34 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.34 5.36 7.32 -89.69 -0.66 4.71 16 39 H 0.35 4.60 9.08 -89.69 -0.81 3.78 16 40 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 42 H 0.06 2.20 6.32 -2.39 -0.02 2.18 16 43 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -58.50 334.27 -0.56 -59.06 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -0.47 Total: 34.51 kcal Atomic # 6 Polarization: -54.35 SS G_CDS: 3.39 Total: -50.97 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -5.50 Total: -83.87 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -58.50 -0.56 -59.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205053918.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.083 kcal (2) G-P(sol) polarization free energy of solvation -58.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds