Wall clock time and date at job start Mon Mar 30 2020 02:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46747 * 179.97438 * 10 9 7 12 12 C 1.42900 * 113.99701 * 179.97438 * 11 10 9 13 13 H 1.09009 * 109.47400 * 330.00097 * 12 11 10 14 14 C 1.52996 * 109.47227 * 90.00252 * 12 11 10 15 15 C 1.53008 * 109.47241 * 179.97438 * 14 12 11 16 16 C 1.52993 * 109.46886 * 300.00094 * 15 14 12 17 17 C 1.52996 * 109.47632 * 59.99896 * 16 15 14 18 18 C 1.53000 * 109.46963 * 300.00141 * 17 16 15 19 19 H 1.09002 * 109.47316 * 299.99291 * 18 17 16 20 20 C 1.50700 * 109.47240 * 179.97438 * 18 17 16 21 21 C 1.38232 * 120.00223 * 299.72610 * 20 18 17 22 22 C 1.38238 * 120.00326 * 179.78074 * 21 20 18 23 23 C 1.38236 * 119.99470 * 0.44974 * 22 21 20 24 24 C 1.38230 * 120.00464 * 359.80824 * 23 22 21 25 25 C 1.38238 * 119.99920 * 119.99625 * 20 18 17 26 26 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 28 28 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 29 29 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 30 30 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 31 31 H 1.09003 * 109.47270 * 299.99661 * 14 12 11 32 32 H 1.08992 * 109.47225 * 59.99588 * 14 12 11 33 33 H 1.09004 * 109.46892 * 179.97438 * 15 14 12 34 34 H 1.08997 * 109.46980 * 60.00005 * 15 14 12 35 35 H 1.09005 * 109.46935 * 299.99537 * 16 15 14 36 36 H 1.09005 * 109.47285 * 180.02562 * 16 15 14 37 37 H 1.09003 * 109.47644 * 180.02562 * 17 16 15 38 38 H 1.08997 * 109.46926 * 59.99665 * 17 16 15 39 39 H 1.07999 * 119.99983 * 0.02562 * 21 20 18 40 40 H 1.07998 * 120.00287 * 180.27256 * 22 21 20 41 41 H 1.08004 * 119.99267 * 179.82892 * 23 22 21 42 42 H 1.07993 * 120.00215 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.00086 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 8 5.4507 -2.6364 0.0009 12 6 6.0319 -3.9419 0.0014 13 1 5.3666 -4.6357 0.5155 14 6 6.2393 -4.4083 -1.4409 15 6 6.8622 -5.8058 -1.4404 16 6 8.2109 -5.7627 -0.7193 17 6 8.0036 -5.2963 0.7230 18 6 7.3806 -3.8989 0.7224 19 1 8.0455 -3.2048 0.2083 20 6 7.1758 -3.4396 2.1431 21 6 6.3601 -4.1633 2.9926 22 6 6.1758 -3.7446 4.2971 23 6 6.7998 -2.5969 4.7492 24 6 7.6113 -1.8703 3.8982 25 6 7.7992 -2.2915 2.5950 26 1 -0.4850 0.8400 -0.0004 27 1 3.8753 -0.6803 -0.8889 28 1 3.8746 -0.6799 0.8911 29 1 3.6579 -3.1505 0.8908 30 1 3.6587 -3.1502 -0.8892 31 1 5.2785 -4.4386 -1.9547 32 1 6.9045 -3.7146 -1.9550 33 1 7.0096 -6.1383 -2.4680 34 1 6.1973 -6.4998 -0.9262 35 1 8.8758 -5.0688 -1.2336 36 1 8.6549 -6.7582 -0.7193 37 1 8.9645 -5.2651 1.2366 38 1 7.3386 -5.9902 1.2372 39 1 5.8700 -5.0581 2.6384 40 1 5.5421 -4.3125 4.9621 41 1 6.6536 -2.2683 5.7676 42 1 8.0991 -0.9739 4.2516 43 1 8.4333 -1.7239 1.9302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205648232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:04 Heat of formation + Delta-G solvation = -53.992376 kcal Electronic energy + Delta-G solvation = -21416.697822 eV Core-core repulsion = 18425.308679 eV Total energy + Delta-G solvation = -2991.389143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.98300 -38.12716 -36.24589 -33.12946 -32.62610 -30.75672 -30.71490 -29.55067 -28.24967 -24.66353 -23.41589 -22.51085 -22.15511 -20.87213 -20.58513 -19.47032 -17.05834 -16.84215 -15.96072 -15.32910 -15.04468 -14.84513 -14.56404 -14.24220 -14.04469 -13.72626 -13.26821 -13.18390 -13.02406 -12.91436 -12.44846 -12.38992 -12.10411 -11.53309 -11.39778 -11.30391 -11.10219 -10.88396 -10.85771 -10.65853 -10.59931 -10.21658 -10.00860 -9.85774 -9.77734 -9.22366 -8.85694 -8.73572 -8.53154 -8.46605 -6.05297 -4.04213 1.53600 1.57752 3.33782 3.40488 3.48195 3.94088 4.13005 4.46948 4.55482 4.73787 4.95883 4.98711 5.09805 5.14255 5.23774 5.25054 5.29593 5.34344 5.37760 5.44953 5.50116 5.63713 5.65829 5.74902 5.85607 5.96467 6.02083 6.04916 6.08314 6.15442 6.18402 6.20922 6.23075 6.37547 6.40481 6.62713 6.66391 6.73273 6.80434 7.16539 7.18451 7.42921 7.72941 7.99106 8.50276 8.97112 9.56674 11.07719 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014650 B = 0.005560 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.769020 B = 5034.790622 C = 6262.338992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.263 1.263 6 H -0.287 1.287 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.008 4.008 10 C 0.079 3.921 11 O -0.383 6.383 12 C 0.099 3.901 13 H 0.056 0.944 14 C -0.143 4.143 15 C -0.117 4.117 16 C -0.120 4.120 17 C -0.107 4.107 18 C -0.046 4.046 19 H 0.083 0.917 20 C -0.059 4.059 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.110 4.110 26 H 0.264 0.736 27 H 0.018 0.982 28 H 0.023 0.977 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.554 -11.071 3.774 21.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.187 1.187 6 H -0.213 1.213 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.045 4.045 10 C 0.003 3.997 11 O -0.303 6.303 12 C 0.041 3.959 13 H 0.074 0.926 14 C -0.181 4.181 15 C -0.155 4.155 16 C -0.158 4.158 17 C -0.145 4.145 18 C -0.064 4.064 19 H 0.101 0.899 20 C -0.059 4.059 21 C -0.134 4.134 22 C -0.136 4.136 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.128 4.128 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 18.494 -10.781 3.775 21.737 hybrid contribution -0.032 0.766 -0.030 0.767 sum 18.462 -10.015 3.745 21.335 Atomic orbital electron populations 1.69907 1.06270 1.27005 1.50924 1.24945 0.94721 0.99147 0.94315 0.86770 0.80533 0.83388 0.78659 1.20177 1.18745 1.21318 1.20946 0.88879 0.94682 1.51457 0.91003 1.19510 0.96461 0.91232 0.97299 1.22619 0.77801 1.00573 0.98660 1.87927 1.21726 1.25748 1.94867 1.21948 0.93365 0.86372 0.94218 0.92616 1.22068 1.01665 0.96533 0.97804 1.21509 0.96554 0.97023 1.00408 1.21565 0.97481 1.01058 0.95652 1.21569 1.00799 0.95222 0.96879 1.20278 0.96828 0.97290 0.92016 0.89866 1.19689 0.96459 0.94974 0.94772 1.20928 0.98597 1.00101 0.93729 1.21078 0.99578 0.97019 0.95919 1.21074 0.98073 0.95765 0.99684 1.21088 0.99068 0.99514 0.94052 1.21007 1.00112 0.95988 0.95652 0.92638 0.96345 0.95860 0.94324 0.94362 0.91418 0.91239 0.91867 0.92006 0.91821 0.91935 0.91499 0.91665 0.86594 0.86379 0.86500 0.86432 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 2 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 22.43 27.47 -169.99 -4.67 17.76 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.52 -15.33 9.66 -34.44 -0.33 -15.66 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.19 4.41 -27.88 -0.12 -0.32 16 10 C 0.08 1.72 5.69 37.16 0.21 1.93 16 11 O -0.38 -7.46 9.61 -35.23 -0.34 -7.80 16 12 C 0.10 1.48 1.86 -26.73 -0.05 1.43 16 13 H 0.06 0.83 7.02 -51.92 -0.36 0.47 16 14 C -0.14 -1.86 5.54 -26.73 -0.15 -2.01 16 15 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 16 C -0.12 -1.09 5.92 -26.74 -0.16 -1.24 16 17 C -0.11 -1.07 5.02 -26.73 -0.13 -1.21 16 18 C -0.05 -0.58 2.11 -91.77 -0.19 -0.78 16 19 H 0.08 1.08 7.88 -51.93 -0.41 0.67 16 20 C -0.06 -0.82 4.43 -104.62 -0.46 -1.29 16 21 C -0.12 -1.58 8.71 -39.58 -0.34 -1.92 16 22 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 23 C -0.13 -1.64 10.05 -39.58 -0.40 -2.03 16 24 C -0.12 -1.56 10.05 -39.58 -0.40 -1.95 16 25 C -0.11 -1.52 9.67 -39.58 -0.38 -1.90 16 26 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 27 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 28 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 29 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 30 H 0.04 0.81 7.87 -51.93 -0.41 0.40 16 31 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.64 7.40 -51.93 -0.38 0.26 16 39 H 0.12 1.43 7.10 -52.49 -0.37 1.06 16 40 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 41 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 42 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 43 H 0.12 1.47 7.95 -52.49 -0.42 1.06 16 LS Contribution 341.61 15.07 5.15 5.15 Total: -1.00 -31.93 341.61 -10.00 -41.93 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.34 Total: -1.38 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: -3.57 Total: -28.23 kcal Atomic # 7 Polarization: -28.20 SS G_CDS: 0.77 Total: -27.43 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.34 Total: -7.80 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.76 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.93 -10.00 -41.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205648232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.063 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds