Wall clock time and date at job start Mon Mar 30 2020 02:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46747 * 179.97438 * 10 9 7 12 12 C 1.42900 * 113.99701 * 179.97438 * 11 10 9 13 13 H 1.09009 * 109.47400 * 330.00097 * 12 11 10 14 14 C 1.52996 * 109.47227 * 90.00252 * 12 11 10 15 15 C 1.53008 * 109.47241 * 179.97438 * 14 12 11 16 16 C 1.52993 * 109.46886 * 300.00094 * 15 14 12 17 17 C 1.52996 * 109.47632 * 59.99896 * 16 15 14 18 18 C 1.53000 * 109.46963 * 300.00141 * 17 16 15 19 19 H 1.09002 * 109.47316 * 299.99291 * 18 17 16 20 20 C 1.50700 * 109.47240 * 179.97438 * 18 17 16 21 21 C 1.38232 * 120.00223 * 299.72610 * 20 18 17 22 22 C 1.38238 * 120.00326 * 179.78074 * 21 20 18 23 23 C 1.38236 * 119.99470 * 0.44974 * 22 21 20 24 24 C 1.38230 * 120.00464 * 359.80824 * 23 22 21 25 25 C 1.38238 * 119.99920 * 119.99625 * 20 18 17 26 26 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 28 28 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 29 29 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 30 30 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 31 31 H 1.09003 * 109.47270 * 299.99661 * 14 12 11 32 32 H 1.08992 * 109.47225 * 59.99588 * 14 12 11 33 33 H 1.09004 * 109.46892 * 179.97438 * 15 14 12 34 34 H 1.08997 * 109.46980 * 60.00005 * 15 14 12 35 35 H 1.09005 * 109.46935 * 299.99537 * 16 15 14 36 36 H 1.09005 * 109.47285 * 180.02562 * 16 15 14 37 37 H 1.09003 * 109.47644 * 180.02562 * 17 16 15 38 38 H 1.08997 * 109.46926 * 59.99665 * 17 16 15 39 39 H 1.07999 * 119.99983 * 0.02562 * 21 20 18 40 40 H 1.07998 * 120.00287 * 180.27256 * 22 21 20 41 41 H 1.08004 * 119.99267 * 179.82892 * 23 22 21 42 42 H 1.07993 * 120.00215 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.00086 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 8 5.4507 -2.6364 0.0009 12 6 6.0319 -3.9419 0.0014 13 1 5.3666 -4.6357 0.5155 14 6 6.2393 -4.4083 -1.4409 15 6 6.8622 -5.8058 -1.4404 16 6 8.2109 -5.7627 -0.7193 17 6 8.0036 -5.2963 0.7230 18 6 7.3806 -3.8989 0.7224 19 1 8.0455 -3.2048 0.2083 20 6 7.1758 -3.4396 2.1431 21 6 6.3601 -4.1633 2.9926 22 6 6.1758 -3.7446 4.2971 23 6 6.7998 -2.5969 4.7492 24 6 7.6113 -1.8703 3.8982 25 6 7.7992 -2.2915 2.5950 26 1 -0.4850 0.8400 -0.0004 27 1 3.8753 -0.6803 -0.8889 28 1 3.8746 -0.6799 0.8911 29 1 3.6579 -3.1505 0.8908 30 1 3.6587 -3.1502 -0.8892 31 1 5.2785 -4.4386 -1.9547 32 1 6.9045 -3.7146 -1.9550 33 1 7.0096 -6.1383 -2.4680 34 1 6.1973 -6.4998 -0.9262 35 1 8.8758 -5.0688 -1.2336 36 1 8.6549 -6.7582 -0.7193 37 1 8.9645 -5.2651 1.2366 38 1 7.3386 -5.9902 1.2372 39 1 5.8700 -5.0581 2.6384 40 1 5.5421 -4.3125 4.9621 41 1 6.6536 -2.2683 5.7676 42 1 8.0991 -0.9739 4.2516 43 1 8.4333 -1.7239 1.9302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205648232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:04 Heat of formation + Delta-G solvation = -70.292915 kcal Electronic energy + Delta-G solvation = -21417.404666 eV Core-core repulsion = 18425.308679 eV Total energy + Delta-G solvation = -2992.095987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = -0.09 seconds Orbital eigenvalues (eV) -41.03405 -39.24377 -37.54902 -35.25997 -33.60959 -32.59147 -31.74115 -30.69336 -29.32449 -26.64202 -24.37634 -23.50517 -23.23752 -22.57289 -21.76639 -20.48137 -19.15239 -17.85490 -17.40070 -16.55206 -16.39984 -16.28366 -15.99966 -15.59621 -15.04967 -14.82316 -14.73394 -14.42819 -14.19865 -14.06355 -14.00156 -13.46916 -13.34204 -13.18339 -12.89457 -12.39345 -12.26770 -12.18697 -12.05721 -11.98946 -11.77675 -11.74329 -11.47374 -11.40360 -11.30321 -11.11576 -10.82368 -10.27862 -9.75397 -9.49377 -8.35506 -6.40974 0.52876 0.56253 1.32826 1.34532 1.48169 2.32318 2.78032 2.93400 2.99529 3.60099 3.78564 4.02117 4.10401 4.17003 4.19095 4.24504 4.29156 4.31030 4.34545 4.39178 4.44395 4.53535 4.58156 4.68828 4.73721 4.81345 4.91894 4.94982 5.03106 5.14605 5.17561 5.20025 5.22044 5.24107 5.30995 5.35301 5.40506 5.50482 5.54893 5.63358 5.66927 5.79020 6.17423 6.19005 6.44398 6.64578 7.24214 8.80713 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014650 B = 0.005560 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.769020 B = 5034.790622 C = 6262.338992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.014 3.986 3 Si 0.948 3.052 4 H -0.263 1.263 5 H -0.255 1.255 6 H -0.277 1.277 7 C -0.535 4.535 8 H 0.038 0.962 9 C -0.002 4.002 10 C 0.095 3.905 11 O -0.397 6.397 12 C 0.092 3.908 13 H 0.053 0.947 14 C -0.141 4.141 15 C -0.113 4.113 16 C -0.116 4.116 17 C -0.101 4.101 18 C -0.040 4.040 19 H 0.080 0.920 20 C -0.073 4.073 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.128 4.128 25 C -0.129 4.129 26 H 0.270 0.730 27 H 0.020 0.980 28 H 0.017 0.983 29 H 0.033 0.967 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.123 0.877 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.668 -11.124 3.894 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.184 4.184 3 Si 0.771 3.229 4 H -0.188 1.188 5 H -0.179 1.179 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.056 0.944 9 C -0.040 4.040 10 C 0.019 3.981 11 O -0.316 6.316 12 C 0.035 3.965 13 H 0.071 0.929 14 C -0.179 4.179 15 C -0.150 4.150 16 C -0.153 4.153 17 C -0.139 4.139 18 C -0.058 4.058 19 H 0.099 0.901 20 C -0.073 4.073 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.155 4.155 24 C -0.146 4.146 25 C -0.147 4.147 26 H 0.079 0.921 27 H 0.039 0.961 28 H 0.035 0.965 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.141 0.859 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 20.624 -10.856 3.891 23.629 hybrid contribution -0.722 0.709 -0.040 1.012 sum 19.902 -10.147 3.851 22.669 Atomic orbital electron populations 1.70033 1.08044 1.28414 1.51916 1.25872 0.95600 1.03203 0.93710 0.85696 0.79316 0.78475 0.79449 1.18795 1.17904 1.20243 1.21201 0.90951 0.93656 1.51505 0.94380 1.19365 0.94011 0.93757 0.96848 1.22196 0.79493 0.97976 0.98484 1.87876 1.19887 1.28805 1.95072 1.22260 0.94138 0.84243 0.95877 0.92857 1.22048 1.01221 0.98519 0.96110 1.21501 0.97034 0.94849 1.01644 1.21563 0.96846 1.02364 0.94563 1.21554 1.01072 0.93323 0.97929 1.20277 0.95394 0.99081 0.91073 0.90138 1.19904 0.96784 0.95273 0.95386 1.21135 0.98927 1.00618 0.94199 1.21400 0.99792 0.97435 0.96121 1.21412 0.97738 0.95622 1.00778 1.21407 0.99088 1.00224 0.93904 1.21263 1.00721 0.96304 0.96401 0.92145 0.96128 0.96491 0.94857 0.94248 0.92865 0.91419 0.90413 0.91721 0.91464 0.89765 0.90376 0.91415 0.85920 0.84710 0.84414 0.84530 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.87 13.96 21.45 0.30 -59.57 16 2 C 0.01 0.84 5.47 84.65 0.46 1.30 16 3 Si 0.95 45.96 27.47 68.60 1.88 47.84 16 4 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.26 -11.97 6.54 99.48 0.65 -11.31 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 7 C -0.54 -32.11 9.66 25.60 0.25 -31.86 16 8 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 9 C 0.00 -0.12 4.41 29.85 0.13 0.01 16 10 C 0.09 4.16 5.69 71.98 0.41 4.57 16 11 O -0.40 -15.35 9.61 -148.98 -1.43 -16.78 16 12 C 0.09 2.69 1.86 30.59 0.06 2.75 16 13 H 0.05 1.57 7.02 -2.38 -0.02 1.56 16 14 C -0.14 -3.54 5.54 30.60 0.17 -3.37 16 15 C -0.11 -2.03 5.92 30.59 0.18 -1.85 16 16 C -0.12 -1.76 5.92 30.59 0.18 -1.58 16 17 C -0.10 -1.81 5.02 30.59 0.15 -1.66 16 18 C -0.04 -0.97 2.11 -11.54 -0.02 -0.99 16 19 H 0.08 1.99 7.88 -2.39 -0.02 1.97 16 20 C -0.07 -1.99 4.43 -19.87 -0.09 -2.08 16 21 C -0.13 -3.48 8.71 22.27 0.19 -3.28 16 22 C -0.13 -3.26 10.05 22.27 0.22 -3.03 16 23 C -0.14 -3.34 10.05 22.27 0.22 -3.11 16 24 C -0.13 -3.19 10.05 22.27 0.22 -2.97 16 25 C -0.13 -3.46 9.67 22.27 0.22 -3.24 16 26 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 27 H 0.02 1.03 7.57 -2.39 -0.02 1.02 16 28 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 29 H 0.03 1.47 8.08 -2.39 -0.02 1.45 16 30 H 0.04 1.69 7.87 -2.39 -0.02 1.67 16 31 H 0.05 1.47 7.87 -2.39 -0.02 1.45 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.19 7.40 -2.39 -0.02 1.17 16 39 H 0.12 2.95 7.10 -2.91 -0.02 2.93 16 40 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 41 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 43 H 0.13 3.03 7.95 -2.91 -0.02 3.01 16 Total: -1.00 -68.63 341.61 4.61 -64.02 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.89 Total: 14.88 kcal Atomic # 6 Polarization: -53.36 SS G_CDS: 2.96 Total: -50.40 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.30 Total: -59.57 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -1.43 Total: -16.78 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.88 Total: 47.84 kcal Total: -68.63 4.61 -64.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205648232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.269 kcal (2) G-P(sol) polarization free energy of solvation -68.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.09 seconds