Wall clock time and date at job start Mon Mar 30 2020 03:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00122 * 2 1 4 4 H 1.48498 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47085 * 300.00286 * 3 2 1 6 6 H 1.48505 * 109.47139 * 59.99850 * 3 2 1 7 7 C 1.38810 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00002 * 157.60555 * 7 2 1 9 9 N 1.36940 * 119.99671 * 337.60795 * 7 2 1 10 10 C 1.46503 * 119.99891 * 145.95995 * 9 7 2 11 11 C 1.50705 * 109.46590 * 269.99426 * 10 9 7 12 12 C 1.38239 * 120.00135 * 269.72401 * 11 10 9 13 13 C 1.38227 * 119.99977 * 179.76764 * 12 11 10 14 14 C 1.38242 * 120.00102 * 0.50898 * 13 12 11 15 15 C 1.38232 * 119.99688 * 359.75020 * 14 13 12 16 16 C 1.38235 * 120.00310 * 359.97438 * 15 14 13 17 17 C 1.46505 * 120.00209 * 325.95365 * 9 7 2 18 18 C 1.53006 * 109.47115 * 275.33392 * 17 9 7 19 19 C 1.53127 * 109.51843 * 294.68236 * 18 17 9 20 20 C 1.53034 * 109.27439 * 182.44270 * 19 18 17 21 21 N 1.46847 * 109.52636 * 59.17498 * 20 19 18 22 22 C 1.46847 * 111.19935 * 298.25812 * 21 20 19 23 23 C 1.53043 * 109.52321 * 61.74098 * 22 21 20 24 24 H 0.97009 * 119.99853 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47214 * 29.99631 * 10 9 7 26 26 H 1.08998 * 109.47068 * 149.99583 * 10 9 7 27 27 H 1.08001 * 119.99793 * 0.02562 * 12 11 10 28 28 H 1.08005 * 120.00016 * 180.23504 * 13 12 11 29 29 H 1.07997 * 120.00111 * 179.72169 * 14 13 12 30 30 H 1.08003 * 119.99874 * 179.97438 * 15 14 13 31 31 H 1.07994 * 120.00275 * 179.97438 * 16 15 14 32 32 H 1.08992 * 109.47570 * 155.33114 * 17 9 7 33 33 H 1.08994 * 109.46642 * 35.32700 * 17 9 7 34 34 H 1.09003 * 109.57406 * 54.83405 * 18 17 9 35 35 H 1.08999 * 109.49699 * 302.37985 * 19 18 17 36 36 H 1.08992 * 109.50421 * 62.49726 * 19 18 17 37 37 H 1.09000 * 109.46256 * 299.16152 * 20 19 18 38 38 H 1.09003 * 109.45844 * 179.19378 * 20 19 18 39 39 H 1.00907 * 110.99754 * 62.35638 * 21 20 19 40 40 H 1.08997 * 109.46245 * 301.72449 * 22 21 20 41 41 H 1.09000 * 109.44964 * 181.74999 * 22 21 20 42 42 H 1.08998 * 109.50067 * 180.87953 * 23 22 21 43 43 H 1.08998 * 109.50314 * 60.76050 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0291 -1.2375 -0.3557 9 7 1.4030 -2.3431 0.4528 10 6 1.7200 -3.6346 -0.1618 11 6 0.7773 -3.8894 -1.3097 12 6 -0.4150 -4.5538 -1.0906 13 6 -1.2818 -4.7832 -2.1425 14 6 -0.9517 -4.3576 -3.4157 15 6 0.2430 -3.6979 -3.6357 16 6 1.1073 -3.4634 -2.5827 17 6 0.4364 -2.2723 1.5515 18 6 1.1802 -2.3051 2.8882 19 6 1.8732 -3.6603 3.0549 20 6 2.5644 -3.7097 4.4194 21 7 1.5689 -3.5148 5.4812 22 6 0.9237 -2.2004 5.3695 23 6 0.1835 -2.1059 4.0333 24 1 -0.4850 0.8401 -0.0004 25 1 2.7456 -3.6196 -0.5304 26 1 1.6119 -4.4262 0.5797 27 1 -0.6711 -4.8899 -0.0967 28 1 -2.2151 -5.2989 -1.9707 29 1 -1.6269 -4.5408 -4.2384 30 1 0.5012 -3.3657 -4.6305 31 1 2.0409 -2.9485 -2.7547 32 1 -0.2432 -3.1224 1.4929 33 1 -0.1330 -1.3460 1.4752 34 1 1.9252 -1.5097 2.9111 35 1 1.1327 -4.4577 2.9930 36 1 2.6146 -3.7894 2.2665 37 1 3.3143 -2.9207 4.4755 38 1 3.0467 -4.6788 4.5472 39 1 0.8837 -4.2556 5.4749 40 1 1.6813 -1.4185 5.4211 41 1 0.2145 -2.0735 6.1874 42 1 -0.2821 -1.1244 3.9439 43 1 -0.5835 -2.8788 3.9867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207439394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:11 Heat of formation + Delta-G solvation = 31.859308 kcal Electronic energy + Delta-G solvation = -21885.527334 eV Core-core repulsion = 18930.153751 eV Total energy + Delta-G solvation = -2955.373583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -38.77099 -38.28025 -35.57317 -31.98188 -31.92915 -30.42530 -30.18889 -29.57542 -25.97982 -25.47214 -22.71758 -22.39821 -21.85669 -21.14092 -19.94105 -19.50109 -16.68914 -16.10699 -15.60670 -14.98559 -14.46240 -14.38336 -14.31245 -13.98782 -13.84039 -13.46299 -13.34866 -12.75235 -12.57310 -12.40943 -11.96248 -11.88939 -11.65314 -11.39016 -11.01185 -10.89855 -10.83626 -10.71041 -10.51771 -10.36368 -10.25656 -10.11789 -9.95190 -9.65627 -9.48489 -8.56003 -8.21254 -8.07252 -7.98402 -6.63455 -5.78599 -3.35145 2.09991 2.12432 3.32220 3.41763 3.43457 4.40017 4.55839 4.59620 5.15746 5.31142 5.35169 5.49747 5.53060 5.54911 5.63178 5.68450 5.70343 5.81703 5.85630 5.87243 6.05937 6.11707 6.20277 6.22937 6.34362 6.37887 6.38721 6.52208 6.56663 6.63700 6.75055 6.77919 6.80975 6.94533 7.13041 7.17829 7.26667 7.29933 7.48964 7.59951 7.71555 7.74318 7.82178 8.46320 9.14684 9.77580 10.33663 11.17683 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.013010 B = 0.007287 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.604579 B = 3841.331446 C = 5298.571052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.012 3.988 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.253 4.253 8 H 0.063 0.937 9 N -0.569 5.569 10 C 0.173 3.827 11 C -0.072 4.072 12 C -0.117 4.117 13 C -0.127 4.127 14 C -0.143 4.143 15 C -0.125 4.125 16 C -0.099 4.099 17 C 0.148 3.852 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.055 3.945 21 N -0.689 5.689 22 C 0.058 3.942 23 C -0.148 4.148 24 H 0.253 0.747 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.019 0.981 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.334 0.666 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 -8.083 3.019 8.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.189 4.189 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.383 4.383 8 H 0.080 0.920 9 N -0.287 5.287 10 C 0.047 3.953 11 C -0.075 4.075 12 C -0.136 4.136 13 C -0.145 4.145 14 C -0.162 4.162 15 C -0.143 4.143 16 C -0.118 4.118 17 C 0.022 3.978 18 C -0.121 4.121 19 C -0.181 4.181 20 C -0.074 4.074 21 N -0.317 5.317 22 C -0.072 4.072 23 C -0.188 4.188 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.037 0.963 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.151 0.849 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.555 -7.710 3.520 8.494 hybrid contribution -0.465 0.960 -0.996 1.459 sum 0.090 -6.751 2.524 7.207 Atomic orbital electron populations 1.69963 1.05490 1.25421 1.51316 1.25096 0.94932 0.98553 1.00300 0.86381 0.79800 0.84241 0.77322 1.20098 1.21762 1.21475 1.19083 0.94250 0.85523 1.39403 0.91984 1.43979 1.49327 1.01746 1.33621 1.20149 0.95024 0.89483 0.90662 1.21055 0.96906 0.93643 0.95912 1.20890 0.94657 1.00119 0.97919 1.20943 0.98909 1.01243 0.93387 1.20862 0.97276 1.01368 0.96658 1.21013 0.94956 0.99701 0.98603 1.20942 0.99699 0.98676 0.92457 1.21074 0.90776 1.02181 0.83756 1.21719 0.97754 0.96237 0.96373 1.22249 1.00063 0.98069 0.97730 1.22037 0.94840 1.01156 0.89384 1.60761 1.18899 1.04294 1.47776 1.21996 0.97486 0.91575 0.96129 1.22221 0.98714 1.01844 0.96012 0.93669 0.93158 0.93569 0.87437 0.87409 0.87447 0.87305 0.86742 0.96262 0.88265 0.91303 0.93450 0.91021 0.91335 0.91763 0.84939 0.91310 0.91654 0.91768 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.64 11.22 55.49 0.62 -24.02 16 2 C 0.01 0.31 5.01 -17.43 -0.09 0.23 16 3 Si 0.89 21.17 29.61 -169.99 -5.03 16.13 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.25 -6.52 9.46 -15.06 -0.14 -6.67 16 8 H 0.06 1.61 7.92 -52.49 -0.42 1.20 16 9 N -0.57 -13.14 2.19 -174.61 -0.38 -13.52 16 10 C 0.17 3.49 4.91 -5.19 -0.03 3.47 16 11 C -0.07 -1.45 5.46 -104.62 -0.57 -2.02 16 12 C -0.12 -2.21 9.70 -39.59 -0.38 -2.59 16 13 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 14 C -0.14 -2.43 10.05 -39.58 -0.40 -2.82 16 15 C -0.12 -2.23 10.05 -39.58 -0.40 -2.63 16 16 C -0.10 -1.96 9.70 -39.58 -0.38 -2.35 16 17 C 0.15 3.28 4.77 -4.04 -0.02 3.26 16 18 C -0.10 -1.87 2.43 -90.49 -0.22 -2.09 16 19 C -0.14 -2.29 4.40 -26.65 -0.12 -2.41 16 20 C 0.06 0.79 6.55 -3.84 -0.03 0.76 16 21 N -0.69 -9.46 6.87 -113.81 -0.78 -10.24 16 22 C 0.06 0.82 6.55 -3.83 -0.03 0.80 16 23 C -0.15 -2.40 5.36 -26.65 -0.14 -2.54 16 24 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.05 1.00 7.98 -51.93 -0.41 0.58 16 26 H 0.05 0.85 6.58 -51.93 -0.34 0.51 16 27 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 28 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 29 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 31 H 0.11 2.24 8.06 -52.49 -0.42 1.82 16 32 H 0.02 0.41 8.03 -51.93 -0.42 0.00 16 33 H 0.10 2.57 5.29 -51.93 -0.27 2.30 16 34 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.24 6.53 -51.93 -0.34 0.90 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.33 4.18 8.86 -39.29 -0.35 3.83 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 340.59 15.07 5.13 5.13 Total: -1.00 -27.73 340.59 -10.96 -38.69 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.18 Total: 8.02 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -3.34 Total: -20.20 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.54 Total: -47.78 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.73 -10.96 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207439394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.552 kcal (2) G-P(sol) polarization free energy of solvation -27.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds