Wall clock time and date at job start Mon Mar 30 2020 03:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00122 * 2 1 4 4 H 1.48498 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47085 * 300.00286 * 3 2 1 6 6 H 1.48505 * 109.47139 * 59.99850 * 3 2 1 7 7 C 1.38810 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00002 * 157.60555 * 7 2 1 9 9 N 1.36940 * 119.99671 * 337.60795 * 7 2 1 10 10 C 1.46503 * 119.99891 * 145.95995 * 9 7 2 11 11 C 1.50705 * 109.46590 * 269.99426 * 10 9 7 12 12 C 1.38239 * 120.00135 * 269.72401 * 11 10 9 13 13 C 1.38227 * 119.99977 * 179.76764 * 12 11 10 14 14 C 1.38242 * 120.00102 * 0.50898 * 13 12 11 15 15 C 1.38232 * 119.99688 * 359.75020 * 14 13 12 16 16 C 1.38235 * 120.00310 * 359.97438 * 15 14 13 17 17 C 1.46505 * 120.00209 * 325.95365 * 9 7 2 18 18 C 1.53006 * 109.47115 * 275.33392 * 17 9 7 19 19 C 1.53127 * 109.51843 * 294.68236 * 18 17 9 20 20 C 1.53034 * 109.27439 * 182.44270 * 19 18 17 21 21 N 1.46847 * 109.52636 * 59.17498 * 20 19 18 22 22 C 1.46847 * 111.19935 * 298.25812 * 21 20 19 23 23 C 1.53043 * 109.52321 * 61.74098 * 22 21 20 24 24 H 0.97009 * 119.99853 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47214 * 29.99631 * 10 9 7 26 26 H 1.08998 * 109.47068 * 149.99583 * 10 9 7 27 27 H 1.08001 * 119.99793 * 0.02562 * 12 11 10 28 28 H 1.08005 * 120.00016 * 180.23504 * 13 12 11 29 29 H 1.07997 * 120.00111 * 179.72169 * 14 13 12 30 30 H 1.08003 * 119.99874 * 179.97438 * 15 14 13 31 31 H 1.07994 * 120.00275 * 179.97438 * 16 15 14 32 32 H 1.08992 * 109.47570 * 155.33114 * 17 9 7 33 33 H 1.08994 * 109.46642 * 35.32700 * 17 9 7 34 34 H 1.09003 * 109.57406 * 54.83405 * 18 17 9 35 35 H 1.08999 * 109.49699 * 302.37985 * 19 18 17 36 36 H 1.08992 * 109.50421 * 62.49726 * 19 18 17 37 37 H 1.09000 * 109.46256 * 299.16152 * 20 19 18 38 38 H 1.09003 * 109.45844 * 179.19378 * 20 19 18 39 39 H 1.00907 * 110.99754 * 62.35638 * 21 20 19 40 40 H 1.08997 * 109.46245 * 301.72449 * 22 21 20 41 41 H 1.09000 * 109.44964 * 181.74999 * 22 21 20 42 42 H 1.08998 * 109.50067 * 180.87953 * 23 22 21 43 43 H 1.08998 * 109.50314 * 60.76050 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0291 -1.2375 -0.3557 9 7 1.4030 -2.3431 0.4528 10 6 1.7200 -3.6346 -0.1618 11 6 0.7773 -3.8894 -1.3097 12 6 -0.4150 -4.5538 -1.0906 13 6 -1.2818 -4.7832 -2.1425 14 6 -0.9517 -4.3576 -3.4157 15 6 0.2430 -3.6979 -3.6357 16 6 1.1073 -3.4634 -2.5827 17 6 0.4364 -2.2723 1.5515 18 6 1.1802 -2.3051 2.8882 19 6 1.8732 -3.6603 3.0549 20 6 2.5644 -3.7097 4.4194 21 7 1.5689 -3.5148 5.4812 22 6 0.9237 -2.2004 5.3695 23 6 0.1835 -2.1059 4.0333 24 1 -0.4850 0.8401 -0.0004 25 1 2.7456 -3.6196 -0.5304 26 1 1.6119 -4.4262 0.5797 27 1 -0.6711 -4.8899 -0.0967 28 1 -2.2151 -5.2989 -1.9707 29 1 -1.6269 -4.5408 -4.2384 30 1 0.5012 -3.3657 -4.6305 31 1 2.0409 -2.9485 -2.7547 32 1 -0.2432 -3.1224 1.4929 33 1 -0.1330 -1.3460 1.4752 34 1 1.9252 -1.5097 2.9111 35 1 1.1327 -4.4577 2.9930 36 1 2.6146 -3.7894 2.2665 37 1 3.3143 -2.9207 4.4755 38 1 3.0467 -4.6788 4.5472 39 1 0.8837 -4.2556 5.4749 40 1 1.6813 -1.4185 5.4211 41 1 0.2145 -2.0735 6.1874 42 1 -0.2821 -1.1244 3.9439 43 1 -0.5835 -2.8788 3.9867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207439394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:10 Heat of formation + Delta-G solvation = 17.594596 kcal Electronic energy + Delta-G solvation = -21886.145899 eV Core-core repulsion = 18930.153751 eV Total energy + Delta-G solvation = -2955.992148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.21610 -39.63645 -37.23428 -33.81730 -33.37876 -31.68665 -31.61162 -31.19316 -27.52706 -27.30204 -24.24105 -23.67705 -23.30376 -22.58911 -21.52680 -20.94300 -18.57928 -17.54907 -16.96049 -16.72929 -15.97292 -15.93799 -15.63669 -15.51288 -15.19473 -15.17023 -14.83403 -14.15052 -14.02623 -13.86044 -13.44881 -13.37139 -13.04685 -13.00599 -12.79680 -12.59428 -12.41178 -12.12554 -12.06599 -11.85487 -11.82546 -11.76815 -11.64444 -11.23820 -10.99391 -10.52645 -9.64748 -9.46001 -9.27985 -8.55246 -7.77145 -5.37524 0.66201 0.68123 1.40103 1.44917 1.52884 2.49458 3.03998 3.26443 3.47257 3.76611 3.95398 4.10244 4.18793 4.23865 4.28229 4.31438 4.35147 4.39479 4.52796 4.57907 4.59706 4.70787 4.78912 4.89450 4.92618 4.98021 5.02378 5.07187 5.14068 5.20823 5.32215 5.32791 5.40135 5.41842 5.62723 5.70011 5.72071 5.73876 5.91968 5.99290 6.11873 6.32268 6.47234 6.56310 7.18341 7.88259 8.38763 9.14328 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.013010 B = 0.007287 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.604579 B = 3841.331446 C = 5298.571052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.033 4.033 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.295 1.295 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.055 0.945 9 N -0.579 5.579 10 C 0.176 3.824 11 C -0.095 4.095 12 C -0.130 4.130 13 C -0.129 4.129 14 C -0.141 4.141 15 C -0.132 4.132 16 C -0.123 4.123 17 C 0.154 3.846 18 C -0.092 4.092 19 C -0.131 4.131 20 C 0.062 3.938 21 N -0.684 5.684 22 C 0.065 3.935 23 C -0.142 4.142 24 H 0.247 0.753 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.116 0.884 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.020 0.980 33 H 0.063 0.937 34 H 0.035 0.965 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.346 0.654 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 -9.721 3.426 10.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.230 4.230 3 Si 0.774 3.226 4 H -0.194 1.194 5 H -0.223 1.223 6 H -0.218 1.218 7 C -0.381 4.381 8 H 0.072 0.928 9 N -0.297 5.297 10 C 0.051 3.949 11 C -0.098 4.098 12 C -0.149 4.149 13 C -0.147 4.147 14 C -0.159 4.159 15 C -0.149 4.149 16 C -0.142 4.142 17 C 0.028 3.972 18 C -0.113 4.113 19 C -0.170 4.170 20 C -0.068 4.068 21 N -0.312 5.312 22 C -0.065 4.065 23 C -0.182 4.182 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.134 0.866 28 H 0.157 0.843 29 H 0.160 0.840 30 H 0.150 0.850 31 H 0.122 0.878 32 H 0.039 0.961 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.164 0.836 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.057 -9.379 3.929 10.168 hybrid contribution -0.329 1.360 -1.197 1.842 sum -0.272 -8.018 2.731 8.475 Atomic orbital electron populations 1.70099 1.06558 1.25351 1.53379 1.25614 0.95453 1.00836 1.01140 0.85566 0.79127 0.81292 0.76658 1.19372 1.22261 1.21824 1.19205 0.94041 0.86769 1.38110 0.92760 1.44050 1.49235 1.01999 1.34447 1.20144 0.94945 0.88511 0.91286 1.21075 0.97614 0.95136 0.95962 1.21096 0.94509 1.00232 0.99047 1.21351 0.99626 1.00628 0.93055 1.21310 0.97120 0.99830 0.97659 1.21337 0.95052 0.99438 0.99119 1.21063 1.00206 0.99616 0.93335 1.20921 0.90805 1.00204 0.85242 1.21520 0.97319 0.96859 0.95585 1.22132 0.99783 0.96408 0.98727 1.21982 0.94624 1.02034 0.88121 1.60751 1.19085 1.04342 1.47063 1.21944 0.97420 0.91723 0.95396 1.22169 0.98392 1.01303 0.96295 0.94344 0.93517 0.91812 0.86639 0.84341 0.84031 0.85043 0.87769 0.96108 0.91943 0.94620 0.92412 0.92416 0.92440 0.89453 0.83624 0.92333 0.89345 0.93381 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.63 11.22 21.65 0.24 -52.38 16 2 C -0.03 -1.80 5.01 84.86 0.43 -1.38 16 3 Si 0.94 44.70 29.61 68.60 2.03 46.74 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.25 -13.31 9.46 84.03 0.79 -12.51 16 8 H 0.05 2.91 7.92 -2.92 -0.02 2.89 16 9 N -0.58 -27.36 2.19 -706.34 -1.54 -28.91 16 10 C 0.18 7.21 4.91 85.63 0.42 7.63 16 11 C -0.09 -3.84 5.46 -19.86 -0.11 -3.95 16 12 C -0.13 -4.77 9.70 22.27 0.22 -4.55 16 13 C -0.13 -4.13 10.05 22.27 0.22 -3.91 16 14 C -0.14 -4.39 10.05 22.27 0.22 -4.17 16 15 C -0.13 -4.52 10.05 22.27 0.22 -4.29 16 16 C -0.12 -4.92 9.70 22.27 0.22 -4.70 16 17 C 0.15 6.97 4.77 86.38 0.41 7.38 16 18 C -0.09 -3.48 2.43 -10.71 -0.03 -3.50 16 19 C -0.13 -4.10 4.40 30.65 0.13 -3.96 16 20 C 0.06 1.65 6.55 86.32 0.57 2.21 16 21 N -0.68 -16.98 6.87 -514.00 -3.53 -20.51 16 22 C 0.07 1.74 6.55 86.33 0.57 2.30 16 23 C -0.14 -4.52 5.36 30.65 0.16 -4.36 16 24 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 25 H 0.05 1.90 7.98 -2.39 -0.02 1.88 16 26 H 0.06 2.32 6.58 -2.39 -0.02 2.31 16 27 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 28 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 29 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 31 H 0.10 4.23 8.06 -2.91 -0.02 4.20 16 32 H 0.02 0.90 8.03 -2.39 -0.02 0.88 16 33 H 0.06 3.37 5.29 -2.39 -0.01 3.36 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 1.96 6.53 -2.39 -0.02 1.95 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.35 7.48 8.86 -89.69 -0.79 6.69 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -60.79 340.59 1.83 -58.96 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.18 Total: 27.87 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: 4.45 Total: -31.76 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -4.83 Total: -101.80 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.74 kcal Total: -60.79 1.83 -58.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207439394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.550 kcal (2) G-P(sol) polarization free energy of solvation -60.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds