Wall clock time and date at job start Mon Mar 30 2020 02:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00175 * 2 1 4 4 H 1.48499 * 109.47296 * 269.99683 * 3 2 1 5 5 H 1.48502 * 109.47073 * 29.99981 * 3 2 1 6 6 H 1.48499 * 109.47072 * 149.99965 * 3 2 1 7 7 C 1.37882 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00449 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99712 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47051 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47131 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.47127 * 179.97438 * 12 11 10 14 14 O 1.42895 * 109.47036 * 180.02562 * 13 12 11 15 15 C 1.42901 * 113.99948 * 179.97438 * 14 13 12 16 16 H 1.09003 * 110.27035 * 332.07425 * 15 14 13 17 17 C 1.54349 * 110.30591 * 209.99575 * 15 14 13 18 18 C 1.54342 * 102.39283 * 214.72929 * 17 15 14 19 19 C 1.51367 * 105.17201 * 26.34861 * 18 17 15 20 20 C 1.38496 * 130.39530 * 162.81114 * 19 18 17 21 21 C 1.38099 * 120.21730 * 179.97438 * 20 19 18 22 22 C 1.38258 * 119.93568 * 0.02562 * 21 20 19 23 23 C 1.38096 * 119.93107 * 0.02562 * 22 21 20 24 24 C 1.38217 * 109.76033 * 342.80943 * 19 18 17 25 25 H 0.96999 * 119.99682 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46547 * 60.00345 * 9 7 2 27 27 H 1.08998 * 109.46840 * 300.00141 * 9 7 2 28 28 H 1.09000 * 109.47611 * 59.99740 * 10 9 7 29 29 H 1.09001 * 109.46832 * 300.00037 * 10 9 7 30 30 H 1.08996 * 109.47452 * 60.00000 * 11 10 9 31 31 H 1.09001 * 109.46997 * 299.99574 * 11 10 9 32 32 H 1.09001 * 109.47502 * 60.00153 * 12 11 10 33 33 H 1.09001 * 109.47289 * 299.99950 * 12 11 10 34 34 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 35 35 H 1.08993 * 109.46955 * 60.00011 * 13 12 11 36 36 H 1.09000 * 110.82034 * 332.95451 * 17 15 14 37 37 H 1.09000 * 110.81867 * 96.30471 * 17 15 14 38 38 H 1.09000 * 110.29978 * 145.27387 * 18 17 15 39 39 H 1.08995 * 110.30307 * 267.42039 * 18 17 15 40 40 H 1.08005 * 119.88709 * 0.02562 * 20 19 18 41 41 H 1.08000 * 120.03323 * 180.02562 * 21 20 19 42 42 H 1.08000 * 120.02732 * 180.02562 * 22 21 20 43 43 H 1.07999 * 119.89103 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 6 5.5514 -2.6368 0.0001 12 6 6.0613 -4.0792 -0.0004 13 6 7.5914 -4.0793 -0.0010 14 8 8.0676 -5.4266 -0.0021 15 6 9.4922 -5.5395 -0.0033 16 1 9.9396 -4.6684 -0.4821 17 6 9.9265 -6.8312 -0.7280 18 6 11.1743 -7.2575 0.0742 19 6 10.9751 -6.6737 1.4565 20 6 11.5908 -6.9819 2.6582 21 6 11.2425 -6.3060 3.8110 22 6 10.2757 -5.3186 3.7665 23 6 9.6600 -5.0106 2.5694 24 6 10.0086 -5.6866 1.4120 25 1 -0.4849 0.8401 -0.0004 26 1 3.8751 -0.6798 0.8895 27 1 3.8745 -0.6809 -0.8905 28 1 3.6578 -3.1508 -0.8896 29 1 3.6584 -3.1503 0.8903 30 1 5.9148 -2.1229 0.8900 31 1 5.9148 -2.1231 -0.8899 32 1 5.6981 -4.5928 -0.8906 33 1 5.6980 -4.5934 0.8894 34 1 7.9544 -3.5654 -0.8910 35 1 7.9551 -3.5657 0.8889 36 1 9.1475 -7.5910 -0.6656 37 1 10.1821 -6.6250 -1.7674 38 1 11.2361 -8.3444 0.1279 39 1 12.0755 -6.8488 -0.3828 40 1 12.3464 -7.7528 2.6936 41 1 11.7248 -6.5484 4.7464 42 1 10.0025 -4.7887 4.6670 43 1 8.9052 -4.2389 2.5353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224373940.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:10 Heat of formation + Delta-G solvation = -51.147979 kcal Electronic energy + Delta-G solvation = -19954.642851 eV Core-core repulsion = 16963.377051 eV Total energy + Delta-G solvation = -2991.265800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -40.53612 -37.91209 -35.82379 -34.91445 -32.75555 -31.37453 -30.60032 -29.22293 -27.34768 -26.16497 -23.24679 -22.96764 -21.40567 -21.15982 -20.64216 -20.01470 -17.06436 -17.04782 -16.55887 -15.91055 -15.50347 -15.34575 -14.68092 -14.35421 -14.26377 -14.05465 -13.39047 -13.13730 -12.92962 -12.73720 -12.43911 -12.33044 -12.04449 -11.92978 -11.67104 -11.61928 -11.29467 -11.15387 -11.07822 -10.95610 -10.62536 -10.47535 -9.86314 -9.66949 -9.63525 -9.44979 -9.12604 -9.05739 -8.81817 -8.50434 -6.00922 -3.98364 1.06831 1.14274 3.32581 3.38013 3.39694 3.43872 3.69252 4.08606 4.24136 4.48163 4.64566 4.75363 4.78820 4.84115 4.93103 5.05451 5.08413 5.23680 5.28623 5.33149 5.37044 5.41166 5.49856 5.57702 5.63695 5.65294 5.72833 5.80075 5.88857 6.00110 6.18951 6.21625 6.27731 6.31552 6.36728 6.42776 6.68414 6.73936 6.77832 6.98478 7.13929 7.36970 7.49586 7.84221 8.58759 9.04814 9.61986 11.12779 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.031009 B = 0.002628 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.743182 B =10651.121215 C =11124.926649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.118 4.118 12 C -0.117 4.117 13 C 0.059 3.941 14 O -0.373 6.373 15 C 0.126 3.874 16 H 0.076 0.924 17 C -0.116 4.116 18 C -0.081 4.081 19 C -0.094 4.094 20 C -0.111 4.111 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.093 4.093 24 C -0.118 4.118 25 H 0.262 0.738 26 H 0.014 0.986 27 H 0.010 0.990 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.185 -13.900 2.726 30.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.139 4.139 11 C -0.156 4.156 12 C -0.154 4.154 13 C -0.017 4.017 14 O -0.292 6.292 15 C 0.068 3.932 16 H 0.094 0.906 17 C -0.153 4.153 18 C -0.118 4.118 19 C -0.094 4.094 20 C -0.129 4.129 21 C -0.135 4.135 22 C -0.140 4.140 23 C -0.111 4.111 24 C -0.118 4.118 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.028 0.972 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 26.898 -13.938 2.721 30.417 hybrid contribution 0.475 1.236 0.147 1.332 sum 27.373 -12.702 2.868 30.313 Atomic orbital electron populations 1.69925 1.06306 1.26801 1.51452 1.25060 0.94747 0.99212 0.94681 0.86754 0.80345 0.83591 0.78444 1.20351 1.21448 1.19033 1.21199 0.89697 0.94422 1.50419 0.91085 1.19590 0.97017 0.92582 0.96075 1.21439 0.91658 0.99663 1.01172 1.21621 0.98217 0.94287 1.01475 1.21581 0.92029 0.98569 1.03238 1.22745 0.96172 0.82956 0.99875 1.87997 1.19299 1.27132 1.94742 1.21608 0.82115 0.98666 0.90785 0.90632 1.22419 0.97334 0.96734 0.98853 1.21028 0.98396 1.01122 0.91232 1.20501 0.96874 0.96979 0.95010 1.20601 1.00324 1.00424 0.91600 1.21064 0.97987 0.96476 0.98019 1.21096 0.96985 0.98239 0.97712 1.20715 0.99218 0.99509 0.91642 1.21069 0.97622 0.97155 0.95943 0.92813 0.96750 0.97189 0.92788 0.92785 0.92462 0.92438 0.91249 0.91297 0.93362 0.93491 0.89496 0.89866 0.90253 0.89960 0.86254 0.85877 0.85745 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.49 13.96 55.43 0.77 -27.71 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.12 27.47 -169.99 -4.67 17.46 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.02 -0.37 4.04 -27.88 -0.11 -0.49 16 10 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 11 C -0.12 -1.88 5.21 -26.73 -0.14 -2.02 16 12 C -0.12 -1.63 5.58 -26.73 -0.15 -1.78 16 13 C 0.06 0.72 5.78 37.16 0.21 0.93 16 14 O -0.37 -4.79 10.03 -35.23 -0.35 -5.14 16 15 C 0.13 1.32 3.35 -26.84 -0.09 1.23 16 16 H 0.08 0.71 7.81 -51.93 -0.41 0.31 16 17 C -0.12 -0.96 6.80 -25.32 -0.17 -1.14 16 18 C -0.08 -0.59 6.77 -26.85 -0.18 -0.78 16 19 C -0.09 -0.91 6.14 -104.21 -0.64 -1.55 16 20 C -0.11 -0.98 10.04 -39.54 -0.40 -1.38 16 21 C -0.12 -1.02 10.05 -39.62 -0.40 -1.42 16 22 C -0.12 -1.17 10.05 -39.63 -0.40 -1.57 16 23 C -0.09 -1.02 9.97 -39.54 -0.39 -1.42 16 24 C -0.12 -1.30 5.82 -104.20 -0.61 -1.90 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 27 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.54 8.10 -51.93 -0.42 0.12 16 35 H 0.05 0.54 6.66 -51.93 -0.35 0.20 16 36 H 0.09 0.79 8.11 -51.93 -0.42 0.37 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 43 H 0.12 1.29 6.63 -52.49 -0.35 0.94 16 LS Contribution 347.93 15.07 5.24 5.24 Total: -1.00 -32.34 347.93 -10.41 -42.74 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -7.37 Total: -3.41 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: -4.03 Total: -29.18 kcal Atomic # 7 Polarization: -28.49 SS G_CDS: 0.77 Total: -27.71 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.35 Total: -5.14 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.34 -10.41 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224373940.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.403 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds