Wall clock time and date at job start Mon Mar 30 2020 02:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00175 * 2 1 4 4 H 1.48499 * 109.47296 * 269.99683 * 3 2 1 5 5 H 1.48502 * 109.47073 * 29.99981 * 3 2 1 6 6 H 1.48499 * 109.47072 * 149.99965 * 3 2 1 7 7 C 1.37882 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00449 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99712 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47051 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47131 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.47127 * 179.97438 * 12 11 10 14 14 O 1.42895 * 109.47036 * 180.02562 * 13 12 11 15 15 C 1.42901 * 113.99948 * 179.97438 * 14 13 12 16 16 H 1.09003 * 110.27035 * 332.07425 * 15 14 13 17 17 C 1.54349 * 110.30591 * 209.99575 * 15 14 13 18 18 C 1.54342 * 102.39283 * 214.72929 * 17 15 14 19 19 C 1.51367 * 105.17201 * 26.34861 * 18 17 15 20 20 C 1.38496 * 130.39530 * 162.81114 * 19 18 17 21 21 C 1.38099 * 120.21730 * 179.97438 * 20 19 18 22 22 C 1.38258 * 119.93568 * 0.02562 * 21 20 19 23 23 C 1.38096 * 119.93107 * 0.02562 * 22 21 20 24 24 C 1.38217 * 109.76033 * 342.80943 * 19 18 17 25 25 H 0.96999 * 119.99682 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46547 * 60.00345 * 9 7 2 27 27 H 1.08998 * 109.46840 * 300.00141 * 9 7 2 28 28 H 1.09000 * 109.47611 * 59.99740 * 10 9 7 29 29 H 1.09001 * 109.46832 * 300.00037 * 10 9 7 30 30 H 1.08996 * 109.47452 * 60.00000 * 11 10 9 31 31 H 1.09001 * 109.46997 * 299.99574 * 11 10 9 32 32 H 1.09001 * 109.47502 * 60.00153 * 12 11 10 33 33 H 1.09001 * 109.47289 * 299.99950 * 12 11 10 34 34 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 35 35 H 1.08993 * 109.46955 * 60.00011 * 13 12 11 36 36 H 1.09000 * 110.82034 * 332.95451 * 17 15 14 37 37 H 1.09000 * 110.81867 * 96.30471 * 17 15 14 38 38 H 1.09000 * 110.29978 * 145.27387 * 18 17 15 39 39 H 1.08995 * 110.30307 * 267.42039 * 18 17 15 40 40 H 1.08005 * 119.88709 * 0.02562 * 20 19 18 41 41 H 1.08000 * 120.03323 * 180.02562 * 21 20 19 42 42 H 1.08000 * 120.02732 * 180.02562 * 22 21 20 43 43 H 1.07999 * 119.89103 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 6 5.5514 -2.6368 0.0001 12 6 6.0613 -4.0792 -0.0004 13 6 7.5914 -4.0793 -0.0010 14 8 8.0676 -5.4266 -0.0021 15 6 9.4922 -5.5395 -0.0033 16 1 9.9396 -4.6684 -0.4821 17 6 9.9265 -6.8312 -0.7280 18 6 11.1743 -7.2575 0.0742 19 6 10.9751 -6.6737 1.4565 20 6 11.5908 -6.9819 2.6582 21 6 11.2425 -6.3060 3.8110 22 6 10.2757 -5.3186 3.7665 23 6 9.6600 -5.0106 2.5694 24 6 10.0086 -5.6866 1.4120 25 1 -0.4849 0.8401 -0.0004 26 1 3.8751 -0.6798 0.8895 27 1 3.8745 -0.6809 -0.8905 28 1 3.6578 -3.1508 -0.8896 29 1 3.6584 -3.1503 0.8903 30 1 5.9148 -2.1229 0.8900 31 1 5.9148 -2.1231 -0.8899 32 1 5.6981 -4.5928 -0.8906 33 1 5.6980 -4.5934 0.8894 34 1 7.9544 -3.5654 -0.8910 35 1 7.9551 -3.5657 0.8889 36 1 9.1475 -7.5910 -0.6656 37 1 10.1821 -6.6250 -1.7674 38 1 11.2361 -8.3444 0.1279 39 1 12.0755 -6.8488 -0.3828 40 1 12.3464 -7.7528 2.6936 41 1 11.7248 -6.5484 4.7464 42 1 10.0025 -4.7887 4.6670 43 1 8.9052 -4.2389 2.5353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224373940.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:09 Heat of formation + Delta-G solvation = -67.798039 kcal Electronic energy + Delta-G solvation = -19955.364852 eV Core-core repulsion = 16963.377051 eV Total energy + Delta-G solvation = -2991.987801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.23337 -38.79089 -37.04369 -35.95442 -34.70410 -32.48948 -31.88055 -29.90583 -28.67645 -27.22059 -24.81331 -23.63589 -22.46034 -21.92081 -21.75920 -21.52248 -18.87670 -17.82569 -17.77864 -16.88381 -16.33787 -16.29463 -16.10498 -15.53130 -15.42833 -15.00417 -14.71401 -14.32375 -14.02174 -13.76129 -13.61061 -13.55795 -13.45014 -12.96151 -12.72126 -12.59147 -12.51178 -12.35335 -12.03509 -11.91297 -11.79860 -11.74857 -11.69758 -11.38100 -11.31033 -11.16007 -10.76641 -10.51383 -9.76284 -9.49972 -8.29888 -6.34298 0.37119 0.44167 1.35517 1.37948 1.50406 2.36462 2.59856 2.91173 3.05292 3.43877 3.57601 3.94571 3.99603 4.03845 4.12918 4.16977 4.22492 4.25135 4.35142 4.39080 4.42365 4.57130 4.63556 4.68419 4.78659 4.84299 4.86870 4.94140 4.97929 5.00230 5.10900 5.17138 5.18433 5.22883 5.25819 5.32844 5.52273 5.57940 5.58756 5.65098 5.66776 5.68297 6.07781 6.27364 6.29333 6.74169 7.30383 8.87305 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.031009 B = 0.002628 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.743182 B =10651.121215 C =11124.926649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.001 4.001 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.537 4.537 8 H 0.027 0.973 9 C -0.013 4.013 10 C -0.098 4.098 11 C -0.107 4.107 12 C -0.111 4.111 13 C 0.063 3.937 14 O -0.392 6.392 15 C 0.119 3.881 16 H 0.084 0.916 17 C -0.114 4.114 18 C -0.076 4.076 19 C -0.104 4.104 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.135 4.135 23 C -0.116 4.116 24 C -0.142 4.142 25 H 0.266 0.734 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.138 0.862 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.447 -13.572 2.633 33.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.198 4.198 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.575 4.575 8 H 0.046 0.954 9 C -0.051 4.051 10 C -0.135 4.135 11 C -0.145 4.145 12 C -0.148 4.148 13 C -0.013 4.013 14 O -0.312 6.312 15 C 0.062 3.938 16 H 0.102 0.898 17 C -0.152 4.152 18 C -0.112 4.112 19 C -0.104 4.104 20 C -0.136 4.136 21 C -0.139 4.139 22 C -0.152 4.152 23 C -0.134 4.134 24 C -0.142 4.142 25 H 0.075 0.925 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.155 0.845 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 30.177 -13.632 2.627 33.217 hybrid contribution -0.606 1.030 0.208 1.213 sum 29.571 -12.602 2.835 32.269 Atomic orbital electron populations 1.70087 1.08423 1.28205 1.52787 1.26123 0.95709 1.03852 0.94071 0.85567 0.79472 0.77750 0.79302 1.18985 1.20959 1.16794 1.21585 0.92521 0.93006 1.50347 0.95421 1.19563 0.93576 0.95396 0.96536 1.21339 0.94903 0.96878 1.00423 1.21464 0.94669 0.95813 1.02514 1.21445 0.93591 0.97099 1.02683 1.22638 0.94666 0.83205 1.00769 1.87958 1.21037 1.27255 1.94909 1.21856 0.80774 1.00076 0.91107 0.89790 1.22464 0.97435 0.95351 0.99904 1.21073 0.98465 1.01911 0.89784 1.20869 0.96504 0.96647 0.96401 1.20961 1.00559 1.00757 0.91286 1.21416 0.97479 0.95792 0.99170 1.21349 0.97286 0.98820 0.97785 1.20858 0.99881 1.00083 0.92559 1.21274 0.98652 0.98103 0.96169 0.92500 0.96161 0.96159 0.93529 0.93773 0.91575 0.91186 0.91573 0.92182 0.92022 0.92997 0.90655 0.87988 0.88909 0.88196 0.83893 0.83485 0.84459 0.86812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.47 13.96 21.45 0.30 -61.17 16 2 C 0.00 -0.08 5.47 84.66 0.46 0.38 16 3 Si 0.96 45.06 27.47 68.60 1.88 46.94 16 4 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.24 -10.61 6.54 99.48 0.65 -9.96 16 7 C -0.54 -32.14 9.66 25.60 0.25 -31.89 16 8 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 9 C -0.01 -0.64 4.04 29.85 0.12 -0.52 16 10 C -0.10 -3.91 5.15 30.59 0.16 -3.75 16 11 C -0.11 -3.23 5.21 30.59 0.16 -3.07 16 12 C -0.11 -2.99 5.58 30.60 0.17 -2.82 16 13 C 0.06 1.47 5.78 71.98 0.42 1.89 16 14 O -0.39 -9.79 10.03 -148.98 -1.49 -11.29 16 15 C 0.12 2.37 3.35 30.52 0.10 2.47 16 16 H 0.08 1.46 7.81 -2.39 -0.02 1.44 16 17 C -0.11 -1.71 6.80 31.51 0.21 -1.49 16 18 C -0.08 -0.94 6.77 30.52 0.21 -0.73 16 19 C -0.10 -1.85 6.14 -19.60 -0.12 -1.97 16 20 C -0.12 -1.83 10.04 22.30 0.22 -1.60 16 21 C -0.12 -1.88 10.05 22.24 0.22 -1.66 16 22 C -0.13 -2.47 10.05 22.24 0.22 -2.25 16 23 C -0.12 -2.52 9.97 22.30 0.22 -2.30 16 24 C -0.14 -3.02 5.82 -19.59 -0.11 -3.13 16 25 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 26 H 0.02 0.94 7.20 -2.39 -0.02 0.93 16 27 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 35 H 0.05 1.15 6.66 -2.39 -0.02 1.13 16 36 H 0.07 1.29 8.11 -2.39 -0.02 1.27 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 41 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 42 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 43 H 0.11 2.48 6.63 -2.91 -0.02 2.46 16 Total: -1.00 -71.00 347.93 4.50 -66.49 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.90 Total: 11.47 kcal Atomic # 6 Polarization: -55.36 SS G_CDS: 2.92 Total: -52.45 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 0.30 Total: -61.17 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -1.49 Total: -11.29 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -71.00 4.50 -66.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224373940.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.304 kcal (2) G-P(sol) polarization free energy of solvation -70.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds