Wall clock time and date at job start Mon Mar 30 2020 02:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99765 * 2 1 4 4 H 1.48496 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47204 * 299.99638 * 3 2 1 6 6 H 1.48501 * 109.47152 * 59.99585 * 3 2 1 7 7 C 1.37880 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00040 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46609 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46632 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10 14 14 O 1.42903 * 109.46726 * 180.02562 * 13 12 11 15 15 C 1.42899 * 113.99629 * 180.02562 * 14 13 12 16 16 C 1.54351 * 110.82201 * 262.97133 * 15 14 13 17 17 C 1.51372 * 105.16961 * 215.42694 * 16 15 14 18 18 C 1.38502 * 130.39042 * 197.18492 * 17 16 15 19 19 C 1.38103 * 120.21572 * 180.02562 * 18 17 16 20 20 C 1.38257 * 119.93049 * 0.02562 * 19 18 17 21 21 C 1.38105 * 119.93920 * 359.97438 * 20 19 18 22 22 C 1.38217 * 109.75973 * 17.19296 * 17 16 15 23 23 C 1.51366 * 109.75840 * 359.97438 * 22 17 16 24 24 H 0.97000 * 119.99871 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46742 * 59.99912 * 9 7 2 26 26 H 1.08992 * 109.47420 * 300.00008 * 9 7 2 27 27 H 1.08992 * 109.46876 * 60.00492 * 10 9 7 28 28 H 1.09001 * 109.46735 * 300.00039 * 10 9 7 29 29 H 1.09001 * 109.46741 * 60.00169 * 11 10 9 30 30 H 1.09002 * 109.47398 * 300.00272 * 11 10 9 31 31 H 1.09001 * 109.46652 * 60.00345 * 12 11 10 32 32 H 1.08992 * 109.47514 * 300.00434 * 12 11 10 33 33 H 1.09002 * 109.47398 * 300.00496 * 13 12 11 34 34 H 1.09001 * 109.47194 * 60.00677 * 13 12 11 35 35 H 1.08997 * 110.73174 * 26.59308 * 15 14 13 36 36 H 1.09000 * 110.30472 * 334.34862 * 16 15 14 37 37 H 1.09000 * 110.30049 * 96.50601 * 16 15 14 38 38 H 1.07997 * 119.88920 * 0.02562 * 18 17 16 39 39 H 1.07994 * 120.03153 * 179.97438 * 19 18 17 40 40 H 1.08005 * 120.02636 * 179.97438 * 20 19 18 41 41 H 1.08001 * 119.88785 * 180.02562 * 21 20 19 42 42 H 1.09003 * 110.30774 * 223.89308 * 23 22 17 43 43 H 1.08998 * 110.38862 * 101.78069 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9871 -0.0001 12 6 2.4748 -6.1500 -0.0008 13 6 1.7098 -7.4750 -0.0020 14 8 2.6385 -8.5611 -0.0020 15 6 2.0240 -9.8512 -0.0038 16 6 1.9459 -10.4237 1.4275 17 6 2.1600 -11.9139 1.2702 18 6 1.8882 -12.9564 2.1406 19 6 2.1731 -14.2578 1.7768 20 6 2.7319 -14.5218 0.5400 21 6 3.0037 -13.4836 -0.3293 22 6 2.7178 -12.1779 0.0335 23 6 2.9163 -10.8833 -0.7252 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8720 -3.6043 0.8905 28 1 2.8721 -3.6042 -0.8895 29 1 0.8542 -5.0445 -0.8904 30 1 0.8535 -5.0451 0.8896 31 1 3.1014 -6.0926 0.8893 32 1 3.1014 -6.0917 -0.8906 33 1 1.0828 -7.5334 0.8877 34 1 1.0835 -7.5321 -0.8923 35 1 1.0356 -9.8071 -0.4611 36 1 2.7297 -9.9927 2.0505 37 1 0.9655 -10.2261 1.8609 38 1 1.4521 -12.7509 3.1070 39 1 1.9604 -15.0684 2.4579 40 1 2.9558 -15.5389 0.2540 41 1 3.4398 -13.6907 -1.2953 42 1 2.5986 -10.9996 -1.7615 43 1 3.9608 -10.5746 -0.6829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224374177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:41 Heat of formation + Delta-G solvation = -56.684943 kcal Electronic energy + Delta-G solvation = -19467.001889 eV Core-core repulsion = 16475.495988 eV Total energy + Delta-G solvation = -2991.505901 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.47739 -38.18091 -35.66655 -34.57145 -32.76145 -31.73613 -30.37925 -28.47609 -27.62094 -26.30299 -23.44483 -22.67200 -21.32887 -21.20260 -20.81230 -20.01005 -17.11591 -16.50311 -16.21273 -16.06658 -15.83092 -15.21417 -14.50373 -14.31629 -14.22749 -13.90455 -13.49726 -13.16619 -13.10585 -12.79656 -12.54062 -12.31904 -12.12515 -11.56924 -11.52547 -11.48203 -11.22760 -11.10269 -10.94194 -10.92911 -10.44030 -10.43406 -10.36133 -9.63315 -9.60316 -9.23727 -9.11886 -8.97886 -8.80745 -8.31963 -5.97014 -3.98941 1.03981 1.07655 3.32775 3.40012 3.42972 3.44659 3.47142 4.07497 4.31679 4.48646 4.67192 4.69718 4.77588 4.81460 4.97909 5.12904 5.20786 5.27737 5.28433 5.38671 5.46243 5.48620 5.50010 5.52139 5.57285 5.73674 5.81001 5.83244 5.86790 6.09845 6.11973 6.19507 6.29850 6.33984 6.43102 6.53277 6.68778 6.83806 6.97544 7.17159 7.20309 7.72435 7.87753 8.04192 8.47528 9.08876 9.64974 11.14393 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.066048 B = 0.002023 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.832896 B =13837.944230 C =13991.195291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.116 4.116 12 C -0.117 4.117 13 C 0.061 3.939 14 O -0.376 6.376 15 C 0.090 3.910 16 C -0.106 4.106 17 C -0.092 4.092 18 C -0.107 4.107 19 C -0.121 4.121 20 C -0.122 4.122 21 C -0.106 4.106 22 C -0.094 4.094 23 C -0.081 4.081 24 H 0.259 0.741 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.080 0.920 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 -29.402 1.169 29.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.154 4.154 13 C -0.015 4.015 14 O -0.295 6.295 15 C 0.031 3.969 16 C -0.143 4.143 17 C -0.092 4.092 18 C -0.125 4.125 19 C -0.139 4.139 20 C -0.140 4.140 21 C -0.124 4.124 22 C -0.094 4.094 23 C -0.118 4.118 24 H 0.069 0.931 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.099 0.901 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.547 -29.244 1.166 29.481 hybrid contribution 0.086 0.840 0.077 0.848 sum 3.633 -28.404 1.244 28.662 Atomic orbital electron populations 1.69980 1.06049 1.26393 1.51217 1.25045 0.94860 0.99272 0.95451 0.86547 0.80143 0.83845 0.77536 1.19745 1.21042 1.21049 1.21340 0.93106 0.91191 1.50079 0.92657 1.19121 0.94089 0.91490 0.97113 1.21614 0.99048 0.93753 1.00314 1.21589 0.97728 0.94443 1.01582 1.21600 0.99052 0.91763 1.03006 1.22728 0.92055 0.86672 1.00084 1.87931 1.33719 1.13039 1.94777 1.22631 0.96236 0.83701 0.94291 1.21590 1.03127 0.90861 0.98739 1.20500 0.98848 0.95130 0.94711 1.20653 1.00634 0.91931 0.99321 1.21045 0.99709 0.96343 0.96829 1.21040 0.99820 0.98856 0.94284 1.20625 1.00592 0.91308 0.99920 1.20487 0.98923 0.94224 0.95774 1.21082 1.01856 0.90139 0.98767 0.93128 0.96691 0.96685 0.93405 0.93404 0.92424 0.92422 0.91434 0.91424 0.93310 0.93246 0.90663 0.88892 0.90463 0.86177 0.85897 0.85890 0.86143 0.90120 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.12 -1.95 5.21 -26.73 -0.14 -2.09 16 12 C -0.12 -1.66 5.58 -26.73 -0.15 -1.81 16 13 C 0.06 0.75 5.77 37.16 0.21 0.96 16 14 O -0.38 -4.69 10.08 -35.23 -0.35 -5.05 16 15 C 0.09 0.91 3.57 -25.32 -0.09 0.82 16 16 C -0.11 -1.02 6.52 -26.85 -0.18 -1.19 16 17 C -0.09 -0.90 6.14 -104.20 -0.64 -1.54 16 18 C -0.11 -0.93 10.04 -39.53 -0.40 -1.33 16 19 C -0.12 -0.93 10.05 -39.62 -0.40 -1.33 16 20 C -0.12 -0.93 10.05 -39.62 -0.40 -1.33 16 21 C -0.11 -0.89 10.04 -39.54 -0.40 -1.29 16 22 C -0.09 -0.90 6.14 -104.21 -0.64 -1.54 16 23 C -0.08 -0.76 6.52 -26.86 -0.18 -0.93 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.57 8.11 -51.93 -0.42 0.15 16 35 H 0.08 0.70 7.82 -51.93 -0.41 0.29 16 36 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 LS Contribution 354.53 15.07 5.34 5.34 Total: -1.00 -31.35 354.53 -10.92 -42.27 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -7.55 Total: -4.38 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: -4.07 Total: -28.50 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.74 Total: -26.63 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.35 Total: -5.05 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.35 -10.92 -42.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224374177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.412 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds