Wall clock time and date at job start Mon Mar 30 2020 02:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99765 * 2 1 4 4 H 1.48496 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47204 * 299.99638 * 3 2 1 6 6 H 1.48501 * 109.47152 * 59.99585 * 3 2 1 7 7 C 1.37880 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00040 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46609 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46632 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10 14 14 O 1.42903 * 109.46726 * 180.02562 * 13 12 11 15 15 C 1.42899 * 113.99629 * 180.02562 * 14 13 12 16 16 C 1.54351 * 110.82201 * 262.97133 * 15 14 13 17 17 C 1.51372 * 105.16961 * 215.42694 * 16 15 14 18 18 C 1.38502 * 130.39042 * 197.18492 * 17 16 15 19 19 C 1.38103 * 120.21572 * 180.02562 * 18 17 16 20 20 C 1.38257 * 119.93049 * 0.02562 * 19 18 17 21 21 C 1.38105 * 119.93920 * 359.97438 * 20 19 18 22 22 C 1.38217 * 109.75973 * 17.19296 * 17 16 15 23 23 C 1.51366 * 109.75840 * 359.97438 * 22 17 16 24 24 H 0.97000 * 119.99871 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46742 * 59.99912 * 9 7 2 26 26 H 1.08992 * 109.47420 * 300.00008 * 9 7 2 27 27 H 1.08992 * 109.46876 * 60.00492 * 10 9 7 28 28 H 1.09001 * 109.46735 * 300.00039 * 10 9 7 29 29 H 1.09001 * 109.46741 * 60.00169 * 11 10 9 30 30 H 1.09002 * 109.47398 * 300.00272 * 11 10 9 31 31 H 1.09001 * 109.46652 * 60.00345 * 12 11 10 32 32 H 1.08992 * 109.47514 * 300.00434 * 12 11 10 33 33 H 1.09002 * 109.47398 * 300.00496 * 13 12 11 34 34 H 1.09001 * 109.47194 * 60.00677 * 13 12 11 35 35 H 1.08997 * 110.73174 * 26.59308 * 15 14 13 36 36 H 1.09000 * 110.30472 * 334.34862 * 16 15 14 37 37 H 1.09000 * 110.30049 * 96.50601 * 16 15 14 38 38 H 1.07997 * 119.88920 * 0.02562 * 18 17 16 39 39 H 1.07994 * 120.03153 * 179.97438 * 19 18 17 40 40 H 1.08005 * 120.02636 * 179.97438 * 20 19 18 41 41 H 1.08001 * 119.88785 * 180.02562 * 21 20 19 42 42 H 1.09003 * 110.30774 * 223.89308 * 23 22 17 43 43 H 1.08998 * 110.38862 * 101.78069 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9871 -0.0001 12 6 2.4748 -6.1500 -0.0008 13 6 1.7098 -7.4750 -0.0020 14 8 2.6385 -8.5611 -0.0020 15 6 2.0240 -9.8512 -0.0038 16 6 1.9459 -10.4237 1.4275 17 6 2.1600 -11.9139 1.2702 18 6 1.8882 -12.9564 2.1406 19 6 2.1731 -14.2578 1.7768 20 6 2.7319 -14.5218 0.5400 21 6 3.0037 -13.4836 -0.3293 22 6 2.7178 -12.1779 0.0335 23 6 2.9163 -10.8833 -0.7252 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8720 -3.6043 0.8905 28 1 2.8721 -3.6042 -0.8895 29 1 0.8542 -5.0445 -0.8904 30 1 0.8535 -5.0451 0.8896 31 1 3.1014 -6.0926 0.8893 32 1 3.1014 -6.0917 -0.8906 33 1 1.0828 -7.5334 0.8877 34 1 1.0835 -7.5321 -0.8923 35 1 1.0356 -9.8071 -0.4611 36 1 2.7297 -9.9927 2.0505 37 1 0.9655 -10.2261 1.8609 38 1 1.4521 -12.7509 3.1070 39 1 1.9604 -15.0684 2.4579 40 1 2.9558 -15.5389 0.2540 41 1 3.4398 -13.6907 -1.2953 42 1 2.5986 -10.9996 -1.7615 43 1 3.9608 -10.5746 -0.6829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224374177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:39 Heat of formation + Delta-G solvation = -71.377641 kcal Electronic energy + Delta-G solvation = -19467.639012 eV Core-core repulsion = 16475.495988 eV Total energy + Delta-G solvation = -2992.143024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.00 seconds Orbital eigenvalues (eV) -41.15130 -39.04454 -37.01558 -35.66127 -34.63554 -32.36140 -32.01750 -29.32755 -28.30707 -27.93440 -25.13009 -23.36165 -22.47333 -21.93941 -21.82910 -21.56371 -18.45244 -17.91657 -17.14357 -17.04230 -16.64187 -16.49213 -16.08930 -15.41140 -15.25783 -14.72823 -14.46685 -14.29728 -13.98481 -13.85865 -13.76622 -13.63419 -13.36562 -13.06235 -12.88369 -12.64055 -12.51368 -12.29599 -12.14185 -11.95255 -11.85104 -11.73786 -11.68502 -11.33737 -11.29698 -10.97171 -10.55938 -10.50634 -9.73809 -9.45357 -8.20279 -6.31363 0.41086 0.45759 1.39579 1.39810 1.53535 2.40600 2.56849 2.82408 3.12429 3.39286 3.61379 3.98960 4.02027 4.05298 4.07160 4.17225 4.25825 4.28300 4.42290 4.43904 4.50731 4.62777 4.65369 4.73483 4.75358 4.84294 4.86745 4.87883 4.90829 5.00124 5.11053 5.16580 5.23246 5.31173 5.32207 5.40701 5.52300 5.56414 5.60372 5.69500 5.79088 5.87583 6.09786 6.26177 6.28812 6.86323 7.37874 8.91676 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.066048 B = 0.002023 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.832896 B =13837.944230 C =13991.195291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.020 3.980 10 C -0.100 4.100 11 C -0.107 4.107 12 C -0.108 4.108 13 C 0.065 3.935 14 O -0.390 6.390 15 C 0.085 3.915 16 C -0.103 4.103 17 C -0.111 4.111 18 C -0.120 4.120 19 C -0.125 4.125 20 C -0.125 4.125 21 C -0.116 4.116 22 C -0.110 4.110 23 C -0.079 4.079 24 H 0.264 0.736 25 H -0.008 1.008 26 H -0.009 1.009 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.132 0.868 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.136 0.864 42 H 0.091 0.909 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.251 -30.553 1.133 30.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.017 4.017 10 C -0.138 4.138 11 C -0.144 4.144 12 C -0.146 4.146 13 C -0.012 4.012 14 O -0.310 6.310 15 C 0.027 3.973 16 C -0.140 4.140 17 C -0.111 4.111 18 C -0.137 4.137 19 C -0.143 4.143 20 C -0.143 4.143 21 C -0.134 4.134 22 C -0.111 4.111 23 C -0.116 4.116 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.149 0.851 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.110 0.890 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.310 -30.413 1.131 30.738 hybrid contribution -0.171 1.132 0.099 1.149 sum 4.139 -29.281 1.229 29.598 Atomic orbital electron populations 1.70105 1.07778 1.27690 1.51849 1.26020 0.95835 1.03455 0.94780 0.85381 0.79029 0.78683 0.77843 1.18663 1.20260 1.20289 1.21789 0.93569 0.92618 1.50300 0.92315 1.19058 0.94568 0.93262 0.94778 1.21452 0.98026 0.93840 1.00459 1.21434 0.97871 0.93331 1.01795 1.21431 0.98361 0.91846 1.02944 1.22613 0.91748 0.85809 1.00985 1.87894 1.34292 1.13853 1.94951 1.22779 0.96764 0.82794 0.94922 1.21530 1.03130 0.91092 0.98269 1.20633 0.99873 0.95279 0.95338 1.20913 1.00799 0.92255 0.99780 1.21390 0.98989 0.96587 0.97337 1.21399 0.98981 0.99872 0.94028 1.20910 1.00526 0.91067 1.00892 1.20629 0.99706 0.94775 0.95946 1.21048 1.01205 0.89963 0.99334 0.92772 0.99006 0.99027 0.93230 0.93183 0.92222 0.92279 0.91570 0.91446 0.92521 0.92282 0.89732 0.89937 0.89776 0.85051 0.83629 0.83492 0.84617 0.89033 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.54 -31.87 9.11 25.60 0.23 -31.64 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.02 1.10 4.97 29.85 0.15 1.25 16 10 C -0.10 -4.19 5.15 30.60 0.16 -4.03 16 11 C -0.11 -3.53 5.21 30.59 0.16 -3.37 16 12 C -0.11 -2.97 5.58 30.59 0.17 -2.80 16 13 C 0.06 1.51 5.77 71.98 0.42 1.93 16 14 O -0.39 -9.42 10.08 -148.98 -1.50 -10.92 16 15 C 0.09 1.67 3.57 31.51 0.11 1.78 16 16 C -0.10 -1.94 6.52 30.52 0.20 -1.74 16 17 C -0.11 -2.10 6.14 -19.59 -0.12 -2.22 16 18 C -0.12 -1.94 10.04 22.30 0.22 -1.72 16 19 C -0.13 -1.69 10.05 22.24 0.22 -1.47 16 20 C -0.13 -1.64 10.05 22.24 0.22 -1.42 16 21 C -0.12 -1.78 10.04 22.30 0.22 -1.56 16 22 C -0.11 -2.03 6.14 -19.60 -0.12 -2.15 16 23 C -0.08 -1.41 6.52 30.51 0.20 -1.21 16 24 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 27 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.27 8.11 -2.39 -0.02 1.25 16 35 H 0.08 1.48 7.82 -2.39 -0.02 1.46 16 36 H 0.08 1.69 8.10 -2.39 -0.02 1.67 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 41 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.09 1.65 8.10 -2.39 -0.02 1.63 16 Total: -1.00 -67.05 354.53 4.67 -62.38 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.94 Total: 9.08 kcal Atomic # 6 Polarization: -53.03 SS G_CDS: 2.91 Total: -50.11 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.28 Total: -57.47 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -1.50 Total: -10.92 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -67.05 4.67 -62.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224374177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.996 kcal (2) G-P(sol) polarization free energy of solvation -67.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.00 seconds