Wall clock time and date at job start Mon Mar 30 2020 02:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99600 * 2 1 4 4 H 1.08998 * 109.46866 * 120.00463 * 3 2 1 5 5 O 1.42899 * 109.47423 * 0.02562 * 3 2 1 6 6 C 1.42895 * 114.00177 * 89.99677 * 5 3 2 7 7 C 1.52991 * 109.47198 * 180.02562 * 6 5 3 8 8 C 1.53005 * 109.47496 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47606 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47300 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.47389 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99725 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00203 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99950 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00148 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46942 * 89.99555 * 15 13 11 17 17 H 1.48493 * 109.47208 * 209.99998 * 15 13 11 18 18 H 1.48496 * 109.46646 * 330.00145 * 15 13 11 19 19 C 1.50702 * 109.46995 * 239.99838 * 3 2 1 20 20 C 1.38234 * 120.00271 * 265.00049 * 19 3 2 21 21 C 1.38230 * 119.99880 * 179.97438 * 20 19 3 22 22 C 1.38235 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99485 * 84.98177 * 19 3 2 25 25 H 1.07999 * 120.00013 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99861 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00013 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47284 * 300.00081 * 6 5 3 29 29 H 1.08998 * 109.47084 * 60.00004 * 6 5 3 30 30 H 1.09001 * 109.47543 * 299.99687 * 7 6 5 31 31 H 1.09002 * 109.47497 * 60.00341 * 7 6 5 32 32 H 1.08994 * 109.46874 * 300.00392 * 8 7 6 33 33 H 1.09002 * 109.46444 * 59.99727 * 8 7 6 34 34 H 1.09000 * 109.47140 * 300.00354 * 9 8 7 35 35 H 1.09004 * 109.46513 * 60.00168 * 9 8 7 36 36 H 1.09000 * 109.47379 * 300.00288 * 10 9 8 37 37 H 1.09004 * 109.47134 * 60.00630 * 10 9 8 38 38 H 0.97000 * 120.00099 * 180.02562 * 14 13 11 39 39 H 1.08001 * 119.99769 * 359.97438 * 20 19 3 40 40 H 1.08000 * 120.00376 * 180.02562 * 21 20 19 41 41 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 42 42 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.00489 * 0.02562 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 2.6901 1.3629 0.8899 5 8 1.1348 2.3913 0.0006 6 6 0.7576 2.8328 1.3062 7 6 -0.2341 3.9916 1.1861 8 6 -0.6386 4.4639 2.5840 9 6 -1.6298 5.6232 2.4639 10 6 -2.0347 6.0950 3.8618 11 6 -3.0115 7.2365 3.7435 12 1 -3.3136 7.5898 2.7686 13 6 -3.5194 7.8298 4.8796 14 7 -3.1511 7.3999 6.0667 15 14 -4.7308 9.2442 4.7329 16 1 -6.1151 8.7083 4.6941 17 1 -4.5819 10.1467 5.9027 18 1 -4.4581 10.0019 3.4852 19 6 2.9299 1.3850 -1.2305 20 6 4.2558 0.9992 -1.1684 21 6 5.0503 1.0720 -2.2972 22 6 4.5188 1.5301 -3.4883 23 6 3.1926 1.9149 -3.5506 24 6 2.3984 1.8438 -2.4213 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 0.2903 2.0099 1.8471 29 1 1.6432 3.1665 1.8469 30 1 0.2327 4.8147 0.6451 31 1 -1.1197 3.6575 0.6456 32 1 -1.1055 3.6407 3.1247 33 1 0.2469 4.7979 3.1249 34 1 -1.1624 6.4463 1.9234 35 1 -2.5152 5.2894 1.9228 36 1 -2.5022 5.2717 4.4019 37 1 -1.1494 6.4286 4.4033 38 1 -3.5088 7.8170 6.8661 39 1 4.6710 0.6409 -0.2380 40 1 6.0862 0.7702 -2.2490 41 1 5.1407 1.5911 -4.3692 42 1 2.7774 2.2732 -4.4810 43 1 1.3626 2.1453 -2.4698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224374841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:04 Heat of formation + Delta-G solvation = -30.518939 kcal Electronic energy + Delta-G solvation = -19737.888163 eV Core-core repulsion = 16747.516905 eV Total energy + Delta-G solvation = -2990.371258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.88707 -38.21169 -35.47200 -33.73700 -32.64763 -31.47447 -31.09992 -30.17056 -26.78974 -25.76104 -23.46615 -22.65600 -21.84035 -20.98943 -20.11581 -19.73425 -17.33095 -16.70178 -16.41668 -16.09890 -15.62947 -15.09338 -14.66164 -14.50454 -14.36226 -13.80344 -13.57514 -13.26202 -12.93861 -12.57377 -12.55407 -12.11140 -11.84605 -11.67571 -11.49689 -11.30767 -11.26382 -10.97529 -10.92077 -10.46024 -10.44475 -10.36019 -9.77497 -9.61319 -9.52720 -9.23757 -9.12758 -9.00071 -8.92585 -8.31322 -5.96532 -3.98552 1.08203 1.20364 2.10105 3.34018 3.39915 3.42654 3.44222 3.65263 4.48839 4.55466 4.66990 4.72332 4.82196 4.92842 5.00043 5.12479 5.15570 5.27815 5.38292 5.39069 5.40037 5.50862 5.66019 5.72171 5.74266 5.81648 5.85478 6.08864 6.21762 6.29648 6.30720 6.35366 6.41621 6.44330 6.48818 6.58411 6.77817 6.83997 6.97779 7.18857 7.20675 7.72448 7.88093 8.04550 8.47806 9.08987 9.65285 11.14874 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.032961 B = 0.002403 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.295721 B =11650.975122 C =11970.756809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.188 4.188 3 C 0.157 3.843 4 H 0.076 0.924 5 O -0.374 6.374 6 C 0.059 3.941 7 C -0.115 4.115 8 C -0.116 4.116 9 C -0.109 4.109 10 C 0.020 3.980 11 C -0.519 4.519 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.078 4.078 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.088 4.088 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.114 0.886 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.260 0.740 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.215 -16.492 -16.346 27.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.206 4.206 3 C 0.099 3.901 4 H 0.094 0.906 5 O -0.293 6.293 6 C -0.017 4.017 7 C -0.153 4.153 8 C -0.153 4.153 9 C -0.147 4.147 10 C -0.017 4.017 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.078 4.078 20 C -0.131 4.131 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.106 4.106 25 H 0.128 0.872 26 H 0.115 0.885 27 H 0.132 0.868 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 15.115 -16.366 -16.321 27.616 hybrid contribution -0.562 0.592 0.296 0.868 sum 14.553 -15.774 -16.025 26.784 Atomic orbital electron populations 1.23947 0.96097 1.02545 0.97957 1.23315 0.96735 0.97780 1.02761 1.19732 0.89273 0.85584 0.95471 0.90602 1.87913 1.62473 1.49946 1.28991 1.22743 0.98078 0.97092 0.83762 1.21590 0.98105 0.96447 0.99158 1.21588 0.99968 0.99368 0.94409 1.21608 0.96695 0.95394 1.00977 1.19111 0.96202 0.95883 0.90552 1.21296 1.25533 1.16557 0.92372 0.92735 1.25038 0.96802 0.97302 0.95451 1.69968 1.44317 1.42041 0.97324 0.86602 0.81537 0.82351 0.77570 1.20687 1.21250 1.19890 1.19653 0.93570 0.99918 0.94673 1.20954 0.92954 1.00383 0.98821 1.21071 0.99684 1.00445 0.92929 1.21173 0.95550 0.99336 0.97897 1.21204 0.94196 1.00219 0.98540 1.21038 1.00488 0.97349 0.91758 0.87158 0.88467 0.86848 0.93120 0.93304 0.91434 0.91486 0.92416 0.92438 0.93421 0.93430 0.96712 0.96701 0.93069 0.86067 0.86043 0.86205 0.86019 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 13.50 29.01 0.39 -1.30 16 2 C -0.19 -1.84 9.49 -36.02 -0.34 -2.18 16 3 C 0.16 1.67 2.87 -29.03 -0.08 1.58 16 4 H 0.08 0.73 7.69 -51.93 -0.40 0.33 16 5 O -0.37 -4.68 7.83 -35.23 -0.28 -4.96 16 6 C 0.06 0.74 5.18 37.15 0.19 0.93 16 7 C -0.12 -1.65 5.58 -26.73 -0.15 -1.80 16 8 C -0.12 -1.96 5.21 -26.73 -0.14 -2.09 16 9 C -0.11 -2.28 5.15 -26.74 -0.14 -2.42 16 10 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 11 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 15 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.08 -0.82 4.99 -104.62 -0.52 -1.34 16 20 C -0.11 -1.02 9.68 -39.59 -0.38 -1.41 16 21 C -0.12 -1.02 10.05 -39.59 -0.40 -1.42 16 22 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 23 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 24 C -0.09 -0.95 9.35 -39.58 -0.37 -1.32 16 25 H 0.11 1.25 6.36 -52.49 -0.33 0.91 16 26 H 0.10 0.83 8.06 -52.49 -0.42 0.40 16 27 H 0.11 0.94 8.06 -52.49 -0.42 0.52 16 28 H 0.05 0.60 7.53 -51.93 -0.39 0.21 16 29 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.13 1.41 7.63 -52.49 -0.40 1.01 16 LS Contribution 359.49 15.07 5.42 5.42 Total: -1.00 -31.21 359.49 -9.83 -41.04 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -7.41 Total: -2.61 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: -3.29 Total: -29.18 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 0.74 Total: -26.68 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.28 Total: -4.96 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.21 -9.83 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224374841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.524 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds