Wall clock time and date at job start Mon Mar 30 2020 02:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99600 * 2 1 4 4 H 1.08998 * 109.46866 * 120.00463 * 3 2 1 5 5 O 1.42899 * 109.47423 * 0.02562 * 3 2 1 6 6 C 1.42895 * 114.00177 * 89.99677 * 5 3 2 7 7 C 1.52991 * 109.47198 * 180.02562 * 6 5 3 8 8 C 1.53005 * 109.47496 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47606 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47300 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.47389 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99725 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00203 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99950 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00148 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46942 * 89.99555 * 15 13 11 17 17 H 1.48493 * 109.47208 * 209.99998 * 15 13 11 18 18 H 1.48496 * 109.46646 * 330.00145 * 15 13 11 19 19 C 1.50702 * 109.46995 * 239.99838 * 3 2 1 20 20 C 1.38234 * 120.00271 * 265.00049 * 19 3 2 21 21 C 1.38230 * 119.99880 * 179.97438 * 20 19 3 22 22 C 1.38235 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99485 * 84.98177 * 19 3 2 25 25 H 1.07999 * 120.00013 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99861 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00013 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47284 * 300.00081 * 6 5 3 29 29 H 1.08998 * 109.47084 * 60.00004 * 6 5 3 30 30 H 1.09001 * 109.47543 * 299.99687 * 7 6 5 31 31 H 1.09002 * 109.47497 * 60.00341 * 7 6 5 32 32 H 1.08994 * 109.46874 * 300.00392 * 8 7 6 33 33 H 1.09002 * 109.46444 * 59.99727 * 8 7 6 34 34 H 1.09000 * 109.47140 * 300.00354 * 9 8 7 35 35 H 1.09004 * 109.46513 * 60.00168 * 9 8 7 36 36 H 1.09000 * 109.47379 * 300.00288 * 10 9 8 37 37 H 1.09004 * 109.47134 * 60.00630 * 10 9 8 38 38 H 0.97000 * 120.00099 * 180.02562 * 14 13 11 39 39 H 1.08001 * 119.99769 * 359.97438 * 20 19 3 40 40 H 1.08000 * 120.00376 * 180.02562 * 21 20 19 41 41 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 42 42 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.00489 * 0.02562 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 2.6901 1.3629 0.8899 5 8 1.1348 2.3913 0.0006 6 6 0.7576 2.8328 1.3062 7 6 -0.2341 3.9916 1.1861 8 6 -0.6386 4.4639 2.5840 9 6 -1.6298 5.6232 2.4639 10 6 -2.0347 6.0950 3.8618 11 6 -3.0115 7.2365 3.7435 12 1 -3.3136 7.5898 2.7686 13 6 -3.5194 7.8298 4.8796 14 7 -3.1511 7.3999 6.0667 15 14 -4.7308 9.2442 4.7329 16 1 -6.1151 8.7083 4.6941 17 1 -4.5819 10.1467 5.9027 18 1 -4.4581 10.0019 3.4852 19 6 2.9299 1.3850 -1.2305 20 6 4.2558 0.9992 -1.1684 21 6 5.0503 1.0720 -2.2972 22 6 4.5188 1.5301 -3.4883 23 6 3.1926 1.9149 -3.5506 24 6 2.3984 1.8438 -2.4213 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 0.2903 2.0099 1.8471 29 1 1.6432 3.1665 1.8469 30 1 0.2327 4.8147 0.6451 31 1 -1.1197 3.6575 0.6456 32 1 -1.1055 3.6407 3.1247 33 1 0.2469 4.7979 3.1249 34 1 -1.1624 6.4463 1.9234 35 1 -2.5152 5.2894 1.9228 36 1 -2.5022 5.2717 4.4019 37 1 -1.1494 6.4286 4.4033 38 1 -3.5088 7.8170 6.8661 39 1 4.6710 0.6409 -0.2380 40 1 6.0862 0.7702 -2.2490 41 1 5.1407 1.5911 -4.3692 42 1 2.7774 2.2732 -4.4810 43 1 1.3626 2.1453 -2.4698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224374841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:01 Heat of formation + Delta-G solvation = -44.877668 kcal Electronic energy + Delta-G solvation = -19738.510804 eV Core-core repulsion = 16747.516905 eV Total energy + Delta-G solvation = -2990.993899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.63748 -39.04903 -36.98661 -35.11854 -34.20720 -32.29516 -31.86481 -31.63369 -28.30533 -26.80642 -25.08529 -23.42862 -22.59890 -22.29105 -21.77204 -20.59743 -18.44288 -18.05152 -17.53869 -17.24327 -16.54324 -16.36749 -16.29802 -15.44507 -15.18631 -15.00368 -14.53984 -14.23501 -14.18496 -13.98861 -13.62008 -13.46258 -13.18523 -13.09263 -12.81213 -12.58236 -12.35528 -12.29039 -12.16611 -11.93940 -11.84150 -11.75125 -11.35295 -11.31050 -10.99064 -10.67756 -10.55426 -10.29890 -9.80351 -9.63655 -8.20343 -6.31583 0.39854 0.52269 1.34300 1.39226 1.40904 1.52146 2.40467 2.57278 2.92690 3.12304 3.81237 3.92625 3.98340 4.05274 4.12717 4.20732 4.27167 4.32170 4.33384 4.41296 4.46745 4.51598 4.66245 4.74273 4.76304 4.87896 4.94673 5.01411 5.07491 5.09409 5.18115 5.30204 5.30362 5.38467 5.54857 5.56342 5.63761 5.64697 5.65922 5.76699 5.78258 5.87000 6.12121 6.26041 6.31385 6.85778 7.37614 8.91492 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.032961 B = 0.002403 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.295721 B =11650.975122 C =11970.756809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.186 4.186 3 C 0.153 3.847 4 H 0.086 0.914 5 O -0.387 6.387 6 C 0.065 3.935 7 C -0.106 4.106 8 C -0.106 4.106 9 C -0.099 4.099 10 C 0.021 3.979 11 C -0.545 4.545 12 H 0.058 0.942 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.264 1.264 19 C -0.094 4.094 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.133 4.133 24 C -0.110 4.110 25 H 0.094 0.906 26 H 0.112 0.888 27 H 0.131 0.869 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.049 0.951 36 H -0.009 1.009 37 H -0.009 1.009 38 H 0.264 0.736 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.069 -16.833 -17.505 29.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.204 4.204 3 C 0.095 3.905 4 H 0.104 0.896 5 O -0.306 6.306 6 C -0.011 4.011 7 C -0.144 4.144 8 C -0.144 4.144 9 C -0.137 4.137 10 C -0.016 4.016 11 C -0.583 4.583 12 H 0.077 0.923 13 C -0.201 4.201 14 N -0.574 5.574 15 Si 0.790 3.210 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.188 1.188 19 C -0.094 4.094 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.143 4.143 23 C -0.151 4.151 24 C -0.128 4.128 25 H 0.113 0.887 26 H 0.130 0.870 27 H 0.148 0.852 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.010 0.990 37 H 0.009 0.991 38 H 0.072 0.928 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.153 0.847 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 15.975 -16.716 -17.496 28.995 hybrid contribution -0.773 0.671 0.638 1.207 sum 15.201 -16.045 -16.857 27.798 Atomic orbital electron populations 1.23983 0.96353 1.02539 0.98633 1.23445 0.96701 0.98105 1.02123 1.19891 0.89172 0.85261 0.96128 0.89639 1.87889 1.63152 1.50850 1.28743 1.22590 0.97863 0.96550 0.84095 1.21408 0.98711 0.97159 0.97074 1.21430 0.98864 0.97832 0.96279 1.21439 0.97884 0.96923 0.97418 1.19044 0.94652 0.94645 0.93224 1.21748 1.26292 1.17513 0.92775 0.92337 1.26016 0.98787 1.00263 0.94989 1.70098 1.45599 1.43545 0.98184 0.85435 0.78927 0.78640 0.77982 1.19676 1.20606 1.18806 1.19756 0.94358 1.00865 0.94428 1.21219 0.92409 1.00103 1.00031 1.21438 1.00820 0.99550 0.92521 1.21513 0.95355 0.98482 0.98958 1.21432 0.94754 1.00244 0.98640 1.21075 1.00280 0.98713 0.92779 0.88725 0.87020 0.85171 0.92546 0.92660 0.91659 0.91437 0.92248 0.92358 0.93276 0.93174 0.99046 0.99083 0.92755 0.84298 0.83558 0.83871 0.84722 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.48 13.50 67.78 0.92 -2.56 16 2 C -0.19 -3.44 9.49 25.65 0.24 -3.19 16 3 C 0.15 3.11 2.87 29.10 0.08 3.19 16 4 H 0.09 1.54 7.69 -2.39 -0.02 1.52 16 5 O -0.39 -9.54 7.83 -148.98 -1.17 -10.71 16 6 C 0.07 1.58 5.18 71.98 0.37 1.95 16 7 C -0.11 -2.96 5.58 30.59 0.17 -2.79 16 8 C -0.11 -3.58 5.21 30.59 0.16 -3.42 16 9 C -0.10 -4.17 5.15 30.59 0.16 -4.02 16 10 C 0.02 1.16 4.97 29.85 0.15 1.31 16 11 C -0.55 -31.99 9.11 25.60 0.23 -31.75 16 12 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 13 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 14 N -0.93 -57.93 13.29 21.45 0.28 -57.64 16 15 Si 0.97 45.09 29.54 68.60 2.03 47.11 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 19 C -0.09 -1.90 4.99 -19.87 -0.10 -2.00 16 20 C -0.12 -1.95 9.68 22.27 0.22 -1.73 16 21 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16 22 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 23 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 24 C -0.11 -2.35 9.35 22.27 0.21 -2.14 16 25 H 0.09 2.15 6.36 -2.91 -0.02 2.13 16 26 H 0.11 1.79 8.06 -2.91 -0.02 1.76 16 27 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 28 H 0.06 1.30 7.53 -2.39 -0.02 1.28 16 29 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 36 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 41 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.13 1.86 8.06 -2.91 -0.02 1.83 16 43 H 0.11 2.63 7.63 -2.91 -0.02 2.61 16 Total: -1.00 -67.15 359.49 6.02 -61.12 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.94 Total: 12.25 kcal Atomic # 6 Polarization: -56.07 SS G_CDS: 3.94 Total: -52.13 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.28 Total: -57.64 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -1.17 Total: -10.71 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -67.15 6.02 -61.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224374841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.246 kcal (2) G-P(sol) polarization free energy of solvation -67.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds