Wall clock time and date at job start Mon Mar 30 2020 02:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99788 * 2 1 4 4 H 1.48495 * 109.47039 * 269.99557 * 3 2 1 5 5 H 1.48496 * 109.47126 * 29.99938 * 3 2 1 6 6 H 1.48506 * 109.47044 * 150.00091 * 3 2 1 7 7 C 1.37874 * 120.00398 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00679 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99745 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47201 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47500 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47500 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47332 * 180.02562 * 12 11 10 14 14 C 1.42902 * 114.00197 * 179.97438 * 13 12 11 15 15 H 1.08993 * 109.70630 * 330.53551 * 14 13 12 16 16 C 1.53326 * 109.68167 * 209.99938 * 14 13 12 17 17 C 1.52732 * 108.38523 * 170.40850 * 16 14 13 18 18 C 1.50632 * 110.58996 * 51.10211 * 17 16 14 19 19 C 1.38911 * 117.75726 * 162.27601 * 18 17 16 20 20 C 1.37928 * 120.54922 * 179.76381 * 19 18 17 21 21 C 1.38270 * 119.76626 * 359.95770 * 20 19 18 22 22 C 1.37923 * 119.77552 * 0.12192 * 21 20 19 23 23 C 1.37657 * 122.56176 * 342.22119 * 18 17 16 24 24 C 1.50640 * 122.56597 * 0.73378 * 23 18 17 25 25 H 0.97001 * 120.00582 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47212 * 60.00190 * 9 7 2 27 27 H 1.09000 * 109.47299 * 299.99941 * 9 7 2 28 28 H 1.09003 * 109.47443 * 60.00096 * 10 9 7 29 29 H 1.09007 * 109.47285 * 300.00281 * 10 9 7 30 30 H 1.09003 * 109.46703 * 59.99632 * 11 10 9 31 31 H 1.08994 * 109.46504 * 300.00244 * 11 10 9 32 32 H 1.09003 * 109.47047 * 59.99419 * 12 11 10 33 33 H 1.09000 * 109.46938 * 300.00141 * 12 11 10 34 34 H 1.08993 * 109.67998 * 290.13516 * 16 14 13 35 35 H 1.08999 * 109.67838 * 50.64482 * 16 14 13 36 36 H 1.08992 * 109.25466 * 171.39128 * 17 16 14 37 37 H 1.09003 * 109.25321 * 290.85063 * 17 16 14 38 38 H 1.08001 * 119.72096 * 359.78038 * 19 18 17 39 39 H 1.08001 * 120.11623 * 179.97438 * 20 19 18 40 40 H 1.08005 * 120.10772 * 180.14446 * 21 20 19 41 41 H 1.08005 * 119.73026 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.25324 * 221.92453 * 24 23 18 43 43 H 1.09000 * 109.25004 * 102.49414 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4804 -4.9871 0.0033 12 6 2.4746 -6.1500 0.0050 13 8 1.7602 -7.3875 0.0049 14 6 2.6002 -8.5436 0.0058 15 1 3.5393 -8.3160 -0.4983 16 6 1.8927 -9.6965 -0.7161 17 6 2.8962 -10.8314 -0.9104 18 6 3.5742 -11.1677 0.3920 19 6 4.2211 -12.3933 0.4870 20 6 4.8647 -12.7579 1.6511 21 6 4.8673 -11.8966 2.7328 22 6 4.2242 -10.6800 2.6411 23 6 3.5729 -10.3122 1.4705 24 6 2.8797 -8.9751 1.4440 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8720 -3.6035 0.8927 29 1 2.8720 -3.6050 -0.8873 30 1 0.8540 -5.0453 -0.8869 31 1 0.8534 -5.0442 0.8930 32 1 3.1007 -6.0914 0.8953 33 1 3.1019 -6.0929 -0.8846 34 1 1.0542 -10.0469 -0.1144 35 1 1.5311 -9.3554 -1.6862 36 1 2.3743 -11.7131 -1.2821 37 1 3.6481 -10.5257 -1.6380 38 1 4.2203 -13.0661 -0.3578 39 1 5.3651 -13.7127 1.7175 40 1 5.3716 -12.1756 3.6463 41 1 4.2271 -10.0076 3.4863 42 1 3.5147 -8.2314 1.9254 43 1 1.9374 -9.0480 1.9870 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224690749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:31 Heat of formation + Delta-G solvation = -62.752441 kcal Electronic energy + Delta-G solvation = -19973.201058 eV Core-core repulsion = 16981.432050 eV Total energy + Delta-G solvation = -2991.769008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.35013 -38.18085 -35.54051 -34.30663 -32.71312 -32.23314 -30.12317 -28.98160 -28.18038 -24.84808 -23.74526 -22.60937 -22.40173 -21.68080 -20.13167 -19.55087 -16.92951 -16.51322 -16.21929 -16.06427 -15.27110 -15.05124 -14.73671 -14.43452 -14.40940 -13.83769 -13.50213 -13.30655 -13.06287 -12.81622 -12.44975 -12.33866 -11.90937 -11.77236 -11.64084 -11.40636 -11.18943 -10.97951 -10.88727 -10.76137 -10.57123 -10.49729 -10.36386 -9.65533 -9.38709 -9.29037 -9.02410 -9.00335 -8.78568 -8.32071 -5.96982 -3.99402 1.11420 1.12273 3.33464 3.39462 3.42831 3.49298 3.66187 4.36692 4.48085 4.50196 4.68929 4.73849 4.80034 4.91328 4.94131 5.10690 5.21284 5.27942 5.36857 5.38112 5.40655 5.48298 5.54209 5.64798 5.71871 5.76463 5.78854 5.80684 5.97767 6.02086 6.14268 6.19259 6.25536 6.27332 6.42664 6.50474 6.76907 6.80710 6.94495 7.12807 7.40889 7.71546 7.86725 8.03757 8.46011 9.07949 9.64385 11.14376 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.039812 B = 0.002434 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.134940 B =11499.116989 C =11882.717123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.116 4.116 12 C 0.062 3.938 13 O -0.380 6.380 14 C 0.091 3.909 15 H 0.062 0.938 16 C -0.116 4.116 17 C -0.078 4.078 18 C -0.080 4.080 19 C -0.120 4.120 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.069 4.069 24 C -0.105 4.105 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.076 0.924 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.320 -26.724 1.585 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.014 4.014 13 O -0.300 6.300 14 C 0.033 3.967 15 H 0.080 0.920 16 C -0.154 4.154 17 C -0.115 4.115 18 C -0.080 4.080 19 C -0.138 4.138 20 C -0.143 4.143 21 C -0.141 4.141 22 C -0.137 4.137 23 C -0.069 4.069 24 C -0.142 4.142 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.095 0.905 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.967 -26.608 1.589 27.821 hybrid contribution 0.814 0.927 0.148 1.243 sum 8.781 -25.680 1.737 27.196 Atomic orbital electron populations 1.69965 1.06046 1.26549 1.50936 1.25036 0.94856 0.99252 0.95418 0.86601 0.79830 0.83526 0.78073 1.20682 1.21232 1.19914 1.21272 0.93014 0.91155 1.50438 0.92738 1.19090 0.94000 0.91189 0.97326 1.21578 0.99176 0.93505 1.00266 1.21639 0.98086 0.92912 1.02750 1.22744 0.95396 0.83637 0.99600 1.87942 1.33730 1.13368 1.94935 1.21956 0.93877 0.86457 0.94438 0.91975 1.21616 0.98313 0.93871 1.01604 1.20472 0.97908 0.98879 0.94283 1.19671 0.98702 0.94142 0.95440 1.21144 0.98379 0.96219 0.98085 1.21057 1.00010 0.99659 0.93590 1.21067 0.99837 0.94418 0.98757 1.21195 0.98063 0.97002 0.97476 1.19576 0.98102 0.95740 0.93450 1.21007 1.01006 0.93476 0.98729 0.93024 0.96531 0.96542 0.93371 0.93369 0.91687 0.91713 0.93705 0.93626 0.90848 0.90352 0.90192 0.90401 0.86194 0.86199 0.86139 0.86062 0.90516 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 11 C -0.12 -2.08 5.58 -26.73 -0.15 -2.23 16 12 C 0.06 0.93 5.76 37.16 0.21 1.15 16 13 O -0.38 -5.57 10.01 -35.23 -0.35 -5.92 16 14 C 0.09 1.05 2.63 -26.70 -0.07 0.98 16 15 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 16 C -0.12 -1.15 5.64 -26.70 -0.15 -1.30 16 17 C -0.08 -0.65 5.67 -28.05 -0.16 -0.81 16 18 C -0.08 -0.76 5.74 -104.62 -0.60 -1.36 16 19 C -0.12 -1.02 9.61 -39.45 -0.38 -1.40 16 20 C -0.13 -1.02 10.05 -39.68 -0.40 -1.42 16 21 C -0.12 -1.04 10.05 -39.69 -0.40 -1.44 16 22 C -0.12 -1.14 9.61 -39.45 -0.38 -1.51 16 23 C -0.07 -0.71 5.74 -104.61 -0.60 -1.31 16 24 C -0.10 -1.14 5.31 -28.05 -0.15 -1.29 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.98 8.14 -51.92 -0.42 0.55 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.12 0.78 8.05 -52.49 -0.42 0.35 16 39 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.12 1.00 8.05 -52.48 -0.42 0.57 16 42 H 0.08 0.82 8.13 -51.93 -0.42 0.39 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 350.11 15.07 5.28 5.28 Total: -1.00 -31.27 350.11 -10.82 -42.09 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -7.55 Total: -3.99 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -3.91 Total: -27.71 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.74 Total: -26.64 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.35 Total: -5.92 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.27 -10.82 -42.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.663 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds