Wall clock time and date at job start Mon Mar 30 2020 02:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99788 * 2 1 4 4 H 1.48495 * 109.47039 * 269.99557 * 3 2 1 5 5 H 1.48496 * 109.47126 * 29.99938 * 3 2 1 6 6 H 1.48506 * 109.47044 * 150.00091 * 3 2 1 7 7 C 1.37874 * 120.00398 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00679 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99745 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47201 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47500 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47500 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47332 * 180.02562 * 12 11 10 14 14 C 1.42902 * 114.00197 * 179.97438 * 13 12 11 15 15 H 1.08993 * 109.70630 * 330.53551 * 14 13 12 16 16 C 1.53326 * 109.68167 * 209.99938 * 14 13 12 17 17 C 1.52732 * 108.38523 * 170.40850 * 16 14 13 18 18 C 1.50632 * 110.58996 * 51.10211 * 17 16 14 19 19 C 1.38911 * 117.75726 * 162.27601 * 18 17 16 20 20 C 1.37928 * 120.54922 * 179.76381 * 19 18 17 21 21 C 1.38270 * 119.76626 * 359.95770 * 20 19 18 22 22 C 1.37923 * 119.77552 * 0.12192 * 21 20 19 23 23 C 1.37657 * 122.56176 * 342.22119 * 18 17 16 24 24 C 1.50640 * 122.56597 * 0.73378 * 23 18 17 25 25 H 0.97001 * 120.00582 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47212 * 60.00190 * 9 7 2 27 27 H 1.09000 * 109.47299 * 299.99941 * 9 7 2 28 28 H 1.09003 * 109.47443 * 60.00096 * 10 9 7 29 29 H 1.09007 * 109.47285 * 300.00281 * 10 9 7 30 30 H 1.09003 * 109.46703 * 59.99632 * 11 10 9 31 31 H 1.08994 * 109.46504 * 300.00244 * 11 10 9 32 32 H 1.09003 * 109.47047 * 59.99419 * 12 11 10 33 33 H 1.09000 * 109.46938 * 300.00141 * 12 11 10 34 34 H 1.08993 * 109.67998 * 290.13516 * 16 14 13 35 35 H 1.08999 * 109.67838 * 50.64482 * 16 14 13 36 36 H 1.08992 * 109.25466 * 171.39128 * 17 16 14 37 37 H 1.09003 * 109.25321 * 290.85063 * 17 16 14 38 38 H 1.08001 * 119.72096 * 359.78038 * 19 18 17 39 39 H 1.08001 * 120.11623 * 179.97438 * 20 19 18 40 40 H 1.08005 * 120.10772 * 180.14446 * 21 20 19 41 41 H 1.08005 * 119.73026 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.25324 * 221.92453 * 24 23 18 43 43 H 1.09000 * 109.25004 * 102.49414 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4804 -4.9871 0.0033 12 6 2.4746 -6.1500 0.0050 13 8 1.7602 -7.3875 0.0049 14 6 2.6002 -8.5436 0.0058 15 1 3.5393 -8.3160 -0.4983 16 6 1.8927 -9.6965 -0.7161 17 6 2.8962 -10.8314 -0.9104 18 6 3.5742 -11.1677 0.3920 19 6 4.2211 -12.3933 0.4870 20 6 4.8647 -12.7579 1.6511 21 6 4.8673 -11.8966 2.7328 22 6 4.2242 -10.6800 2.6411 23 6 3.5729 -10.3122 1.4705 24 6 2.8797 -8.9751 1.4440 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8720 -3.6035 0.8927 29 1 2.8720 -3.6050 -0.8873 30 1 0.8540 -5.0453 -0.8869 31 1 0.8534 -5.0442 0.8930 32 1 3.1007 -6.0914 0.8953 33 1 3.1019 -6.0929 -0.8846 34 1 1.0542 -10.0469 -0.1144 35 1 1.5311 -9.3554 -1.6862 36 1 2.3743 -11.7131 -1.2821 37 1 3.6481 -10.5257 -1.6380 38 1 4.2203 -13.0661 -0.3578 39 1 5.3651 -13.7127 1.7175 40 1 5.3716 -12.1756 3.6463 41 1 4.2271 -10.0076 3.4863 42 1 3.5147 -8.2314 1.9254 43 1 1.9374 -9.0480 1.9870 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224690749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:28 Heat of formation + Delta-G solvation = -77.633946 kcal Electronic energy + Delta-G solvation = -19973.846368 eV Core-core repulsion = 16981.432050 eV Total energy + Delta-G solvation = -2992.414318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.07842 -39.17356 -36.77071 -35.75319 -34.24321 -33.35709 -31.09042 -30.23355 -29.27256 -26.62440 -24.61374 -23.45802 -23.27491 -23.05246 -21.80040 -20.38471 -18.43642 -17.83174 -17.30655 -17.03203 -16.52889 -16.34903 -15.81021 -15.58663 -15.17090 -15.11165 -14.52225 -14.39166 -14.05977 -13.91205 -13.75703 -13.61123 -13.24059 -12.99789 -12.83110 -12.70075 -12.41759 -12.33751 -12.26064 -12.14976 -11.75185 -11.66280 -11.54790 -11.39681 -11.31694 -11.06096 -10.55850 -10.44208 -9.65762 -9.46136 -8.19942 -6.31638 0.45071 0.47002 1.39943 1.41826 1.52929 2.40442 2.62740 2.83963 3.12861 3.64705 3.75301 3.93312 4.01361 4.04424 4.09375 4.21630 4.24634 4.27631 4.35651 4.45160 4.54590 4.57322 4.60826 4.62993 4.73359 4.83368 4.87413 4.90534 4.97862 5.08000 5.13711 5.16690 5.23091 5.26310 5.27476 5.31149 5.53138 5.59975 5.63252 5.74303 5.75323 5.85720 6.13412 6.24333 6.32199 6.85801 7.37710 8.92110 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.039812 B = 0.002434 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.134940 B =11499.116989 C =11882.717123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.094 4.094 11 C -0.109 4.109 12 C 0.071 3.929 13 O -0.398 6.398 14 C 0.086 3.914 15 H 0.068 0.932 16 C -0.114 4.114 17 C -0.073 4.073 18 C -0.092 4.092 19 C -0.126 4.126 20 C -0.128 4.128 21 C -0.130 4.130 22 C -0.134 4.134 23 C -0.089 4.089 24 C -0.100 4.100 25 H 0.264 0.736 26 H -0.010 1.010 27 H -0.010 1.010 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.126 0.874 42 H 0.073 0.927 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.279 -27.867 1.306 29.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.015 4.015 10 C -0.132 4.132 11 C -0.147 4.147 12 C -0.005 4.005 13 O -0.318 6.318 14 C 0.029 3.971 15 H 0.086 0.914 16 C -0.152 4.152 17 C -0.110 4.110 18 C -0.092 4.092 19 C -0.144 4.144 20 C -0.146 4.146 21 C -0.148 4.148 22 C -0.152 4.152 23 C -0.089 4.089 24 C -0.137 4.137 25 H 0.072 0.928 26 H 0.009 0.991 27 H 0.008 0.992 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.144 0.856 42 H 0.092 0.908 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.937 -27.771 1.310 29.524 hybrid contribution 0.174 1.212 0.255 1.250 sum 10.111 -26.559 1.564 28.462 Atomic orbital electron populations 1.70106 1.07898 1.27800 1.51717 1.26044 0.95816 1.03570 0.94748 0.85408 0.78637 0.78215 0.78545 1.19674 1.20754 1.18619 1.21727 0.93634 0.92359 1.50475 0.91972 1.19024 0.94524 0.93239 0.94756 1.21357 0.98027 0.92830 1.00981 1.21458 0.98297 0.92935 1.01993 1.22529 0.94322 0.82952 1.00696 1.87905 1.34823 1.13925 1.95135 1.22159 0.93927 0.85803 0.95248 0.91441 1.21612 0.98513 0.93816 1.01222 1.20478 0.97700 0.98797 0.94020 1.19891 0.99086 0.94581 0.95646 1.21437 0.97878 0.96055 0.99023 1.21415 0.99514 1.00458 0.93211 1.21361 0.99570 0.94028 0.99809 1.21376 0.98471 0.97833 0.97535 1.19627 0.99134 0.95702 0.94413 1.20909 1.00590 0.94124 0.98067 0.92764 0.99119 0.99197 0.92616 0.92501 0.92424 0.92600 0.92700 0.92395 0.91528 0.90196 0.88397 0.89496 0.84084 0.83870 0.84287 0.85615 0.90796 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.20 13.29 21.44 0.28 -57.91 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 3 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.54 -31.65 9.11 25.60 0.23 -31.41 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.09 -3.94 5.15 30.60 0.16 -3.78 16 11 C -0.11 -3.92 5.58 30.60 0.17 -3.75 16 12 C 0.07 2.07 5.76 71.98 0.41 2.48 16 13 O -0.40 -11.49 10.01 -148.98 -1.49 -12.98 16 14 C 0.09 1.94 2.63 30.61 0.08 2.02 16 15 H 0.07 1.44 7.75 -2.39 -0.02 1.42 16 16 C -0.11 -2.15 5.64 30.61 0.17 -1.97 16 17 C -0.07 -1.07 5.67 29.74 0.17 -0.90 16 18 C -0.09 -1.62 5.74 -19.86 -0.11 -1.74 16 19 C -0.13 -1.85 9.61 22.36 0.21 -1.64 16 20 C -0.13 -1.78 10.05 22.20 0.22 -1.56 16 21 C -0.13 -1.99 10.05 22.20 0.22 -1.76 16 22 C -0.13 -2.45 9.61 22.36 0.21 -2.24 16 23 C -0.09 -1.77 5.74 -19.86 -0.11 -1.89 16 24 C -0.10 -2.15 5.31 29.74 0.16 -1.99 16 25 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 26 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 27 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 28 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.54 8.09 -2.39 -0.02 1.53 16 34 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 1.09 8.12 -2.39 -0.02 1.07 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.14 1.39 8.05 -2.91 -0.02 1.37 16 39 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 40 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 41 H 0.13 2.04 8.05 -2.91 -0.02 2.02 16 42 H 0.07 1.57 8.13 -2.39 -0.02 1.55 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -67.36 350.11 4.58 -62.78 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.94 Total: 9.84 kcal Atomic # 6 Polarization: -51.40 SS G_CDS: 2.81 Total: -48.59 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.28 Total: -57.91 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -1.49 Total: -12.98 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -67.36 4.58 -62.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.851 kcal (2) G-P(sol) polarization free energy of solvation -67.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds