Wall clock time and date at job start Mon Mar 30 2020 02:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38254 * 120.02871 * 2 1 4 4 C 1.38100 * 119.93399 * 179.97438 * 3 2 1 5 5 C 1.38501 * 120.21206 * 359.97438 * 4 3 2 6 6 C 1.38214 * 119.85286 * 0.02562 * 5 4 3 7 7 C 1.38093 * 120.03492 * 179.97438 * 2 1 3 8 8 C 1.51369 * 109.75966 * 180.02562 * 6 5 4 9 9 C 1.54344 * 105.16899 * 342.81429 * 8 6 5 10 10 C 1.51370 * 130.38706 * 180.02562 * 5 4 3 11 11 H 1.09002 * 110.30535 * 78.26466 * 10 5 4 12 12 O 1.42900 * 110.38615 * 316.15221 * 10 5 4 13 13 C 1.42902 * 114.00052 * 92.83031 * 12 10 5 14 14 C 1.53000 * 109.47237 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.47095 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.46774 * 180.02562 * 15 14 13 17 17 C 1.50711 * 109.46909 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99630 * 359.97438 * 17 16 15 19 19 C 1.37868 * 119.99961 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00363 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00108 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46841 * 89.99819 * 21 19 17 23 23 H 1.48498 * 109.47369 * 210.00095 * 21 19 17 24 24 H 1.48501 * 109.47053 * 330.00215 * 21 19 17 25 25 H 1.08997 * 109.47774 * 270.02196 * 1 2 3 26 26 H 1.09003 * 109.47483 * 30.02928 * 1 2 3 27 27 H 1.09008 * 109.46713 * 150.02357 * 1 2 3 28 28 H 1.08000 * 120.03680 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.89633 * 179.97438 * 4 3 2 30 30 H 1.08002 * 119.89182 * 0.04314 * 7 2 1 31 31 H 1.08997 * 110.30494 * 223.89029 * 8 6 5 32 32 H 1.09002 * 110.38613 * 101.77383 * 8 6 5 33 33 H 1.09004 * 110.82182 * 268.11866 * 9 8 6 34 34 H 1.08998 * 110.99404 * 144.64950 * 9 8 6 35 35 H 1.08997 * 109.47197 * 300.00470 * 13 12 10 36 36 H 1.09002 * 109.46716 * 60.00271 * 13 12 10 37 37 H 1.09004 * 109.47145 * 300.00513 * 14 13 12 38 38 H 1.09002 * 109.46936 * 60.00540 * 14 13 12 39 39 H 1.09003 * 109.46835 * 299.99595 * 15 14 13 40 40 H 1.08991 * 109.46861 * 59.99873 * 15 14 13 41 41 H 1.08997 * 109.47340 * 299.99623 * 16 15 14 42 42 H 1.09002 * 109.47438 * 59.99953 * 16 15 14 43 43 H 0.97005 * 120.00357 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1970 0.0000 4 6 3.5799 1.1947 0.0005 5 6 4.2749 -0.0034 0.0016 6 6 3.5832 -1.2000 0.0016 7 6 2.1982 -1.1955 0.0005 8 6 4.5604 -2.3559 0.0035 9 6 5.9085 -1.7459 -0.4355 10 6 5.7643 -0.2732 0.0029 11 1 6.1728 -0.1356 1.0040 12 8 6.4270 0.5882 -0.9249 13 6 6.9135 1.8010 -0.3466 14 6 7.6014 2.6403 -1.4252 15 6 8.1227 3.9386 -0.8059 16 6 8.8100 4.7781 -1.8846 17 6 9.3230 6.0573 -1.2747 18 1 9.1734 6.2520 -0.2230 19 6 9.9833 6.9787 -2.0594 20 7 10.1652 6.7418 -3.3402 21 14 10.6186 8.5646 -1.3036 22 1 12.0052 8.3585 -0.8134 23 1 10.6103 9.6394 -2.3283 24 1 9.7454 8.9564 -0.1682 25 1 -0.3634 0.0004 1.0276 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3633 -0.8903 -0.5135 28 1 1.6600 2.1329 -0.0004 29 1 4.1198 2.1301 0.0001 30 1 1.6570 -2.1301 0.0002 31 1 4.2428 -3.1209 -0.7050 32 1 4.6452 -2.7798 1.0041 33 1 6.0327 -1.8177 -1.5160 34 1 6.7404 -2.2245 0.0811 35 1 6.0797 2.3627 0.0746 36 1 7.6287 1.5663 0.4417 37 1 8.4352 2.0784 -1.8461 38 1 6.8865 2.8751 -2.2139 39 1 7.2891 4.5007 -0.3848 40 1 8.8376 3.7036 -0.0175 41 1 9.6436 4.2164 -2.3061 42 1 8.0947 5.0132 -2.6728 43 1 10.6294 7.3903 -3.8924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224693175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:45 Heat of formation + Delta-G solvation = -54.922670 kcal Electronic energy + Delta-G solvation = -20128.334882 eV Core-core repulsion = 17136.905399 eV Total energy + Delta-G solvation = -2991.429483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.47123 -37.85358 -35.79521 -34.35932 -32.28028 -32.07957 -30.18936 -28.69859 -27.41672 -25.78981 -24.52675 -22.66180 -21.76429 -20.99603 -20.36006 -19.93297 -16.80802 -16.77012 -16.19009 -15.77504 -15.17296 -14.95270 -14.60349 -14.36213 -13.94006 -13.88382 -13.71413 -13.13697 -12.83587 -12.44357 -12.36775 -12.29383 -12.06764 -11.90150 -11.60856 -11.54961 -11.25947 -11.07763 -10.94320 -10.87102 -10.65346 -10.51142 -10.38087 -9.65914 -9.41255 -9.29152 -9.02367 -8.88740 -8.53445 -8.31904 -5.96852 -3.99344 1.16797 1.27178 3.33512 3.39504 3.42863 3.49577 3.88230 4.19060 4.38731 4.48540 4.70729 4.79958 4.84128 4.96061 5.01994 5.19126 5.25404 5.34101 5.34905 5.37968 5.39631 5.48562 5.54848 5.58743 5.63945 5.72547 5.82183 5.90104 5.93394 6.04513 6.12735 6.19060 6.30356 6.44826 6.49988 6.52738 6.80609 6.87587 6.94466 7.12545 7.39604 7.71652 7.86845 8.03895 8.46009 9.08020 9.64491 11.14523 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.026203 B = 0.002849 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.323893 B = 9826.789053 C =10582.520436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.122 4.122 4 C -0.088 4.088 5 C -0.121 4.121 6 C -0.090 4.090 7 C -0.112 4.112 8 C -0.080 4.080 9 C -0.116 4.116 10 C 0.126 3.874 11 H 0.074 0.926 12 O -0.373 6.373 13 C 0.060 3.940 14 C -0.116 4.116 15 C -0.107 4.107 16 C 0.021 3.979 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.664 -18.940 8.394 26.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 C -0.140 4.140 4 C -0.106 4.106 5 C -0.122 4.122 6 C -0.090 4.090 7 C -0.130 4.130 8 C -0.117 4.117 9 C -0.153 4.153 10 C 0.068 3.932 11 H 0.092 0.908 12 O -0.292 6.292 13 C -0.016 4.016 14 C -0.154 4.154 15 C -0.145 4.145 16 C -0.016 4.016 17 C -0.559 4.559 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.142 0.858 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.562 -18.904 8.036 26.386 hybrid contribution 0.335 1.120 0.599 1.313 sum -16.227 -17.784 8.635 25.576 Atomic orbital electron populations 1.20769 0.91118 1.02769 1.02220 1.19802 0.95955 0.92986 0.99891 1.20961 0.93839 0.97645 1.01602 1.20727 0.93884 0.97422 0.98586 1.21073 0.96558 0.93645 1.00879 1.20465 0.93499 0.95510 0.99547 1.20425 0.92572 0.97536 1.02476 1.21016 0.92717 0.95861 1.02082 1.22403 0.96998 0.92688 1.03207 1.21570 0.87428 0.90707 0.93496 0.90791 1.88006 1.74684 1.31114 1.35428 1.22804 0.96865 0.84941 0.97019 1.21643 0.99953 0.96268 0.97518 1.21575 0.99284 0.93676 0.99960 1.19090 0.95344 0.93808 0.93338 1.21275 1.36012 1.03220 0.95378 0.92736 1.25035 0.96224 0.98429 0.94852 1.69973 1.42480 1.35910 1.05157 0.86603 0.79250 0.83270 0.78922 1.20679 1.21225 1.19901 0.91257 0.91466 0.91639 0.85829 0.85984 0.86380 0.90360 0.90032 0.89536 0.89930 0.93654 0.93555 0.91662 0.91708 0.93388 0.93350 0.96538 0.96540 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.09 -0.88 5.88 -104.67 -0.62 -1.49 16 3 C -0.12 -1.37 9.70 -39.63 -0.38 -1.76 16 4 C -0.09 -1.12 9.94 -39.53 -0.39 -1.52 16 5 C -0.12 -1.54 5.82 -104.20 -0.61 -2.15 16 6 C -0.09 -1.00 6.14 -104.21 -0.64 -1.64 16 7 C -0.11 -1.14 9.69 -39.54 -0.38 -1.53 16 8 C -0.08 -0.69 6.77 -26.85 -0.18 -0.87 16 9 C -0.12 -1.14 6.80 -25.33 -0.17 -1.31 16 10 C 0.13 1.56 3.33 -26.86 -0.09 1.47 16 11 H 0.07 0.84 7.83 -51.93 -0.41 0.43 16 12 O -0.37 -5.71 10.03 -35.23 -0.35 -6.06 16 13 C 0.06 0.91 5.79 37.16 0.21 1.13 16 14 C -0.12 -2.11 5.58 -26.73 -0.15 -2.26 16 15 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 16 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 17 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 18 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 21 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 27 H 0.06 0.41 8.09 -51.92 -0.42 -0.01 16 28 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.12 1.55 6.50 -52.49 -0.34 1.21 16 30 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.92 8.11 -51.93 -0.42 0.50 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.66 6.48 -51.93 -0.34 0.32 16 36 H 0.05 0.66 8.10 -51.93 -0.42 0.24 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -31.87 351.11 -10.45 -42.33 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -7.38 Total: -3.57 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: -3.73 Total: -28.18 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.74 Total: -26.73 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.35 Total: -6.06 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.87 -10.45 -42.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224693175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.595 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds