Wall clock time and date at job start Mon Mar 30 2020 02:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38254 * 120.02871 * 2 1 4 4 C 1.38100 * 119.93399 * 179.97438 * 3 2 1 5 5 C 1.38501 * 120.21206 * 359.97438 * 4 3 2 6 6 C 1.38214 * 119.85286 * 0.02562 * 5 4 3 7 7 C 1.38093 * 120.03492 * 179.97438 * 2 1 3 8 8 C 1.51369 * 109.75966 * 180.02562 * 6 5 4 9 9 C 1.54344 * 105.16899 * 342.81429 * 8 6 5 10 10 C 1.51370 * 130.38706 * 180.02562 * 5 4 3 11 11 H 1.09002 * 110.30535 * 78.26466 * 10 5 4 12 12 O 1.42900 * 110.38615 * 316.15221 * 10 5 4 13 13 C 1.42902 * 114.00052 * 92.83031 * 12 10 5 14 14 C 1.53000 * 109.47237 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.47095 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.46774 * 180.02562 * 15 14 13 17 17 C 1.50711 * 109.46909 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99630 * 359.97438 * 17 16 15 19 19 C 1.37868 * 119.99961 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00363 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00108 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46841 * 89.99819 * 21 19 17 23 23 H 1.48498 * 109.47369 * 210.00095 * 21 19 17 24 24 H 1.48501 * 109.47053 * 330.00215 * 21 19 17 25 25 H 1.08997 * 109.47774 * 270.02196 * 1 2 3 26 26 H 1.09003 * 109.47483 * 30.02928 * 1 2 3 27 27 H 1.09008 * 109.46713 * 150.02357 * 1 2 3 28 28 H 1.08000 * 120.03680 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.89633 * 179.97438 * 4 3 2 30 30 H 1.08002 * 119.89182 * 0.04314 * 7 2 1 31 31 H 1.08997 * 110.30494 * 223.89029 * 8 6 5 32 32 H 1.09002 * 110.38613 * 101.77383 * 8 6 5 33 33 H 1.09004 * 110.82182 * 268.11866 * 9 8 6 34 34 H 1.08998 * 110.99404 * 144.64950 * 9 8 6 35 35 H 1.08997 * 109.47197 * 300.00470 * 13 12 10 36 36 H 1.09002 * 109.46716 * 60.00271 * 13 12 10 37 37 H 1.09004 * 109.47145 * 300.00513 * 14 13 12 38 38 H 1.09002 * 109.46936 * 60.00540 * 14 13 12 39 39 H 1.09003 * 109.46835 * 299.99595 * 15 14 13 40 40 H 1.08991 * 109.46861 * 59.99873 * 15 14 13 41 41 H 1.08997 * 109.47340 * 299.99623 * 16 15 14 42 42 H 1.09002 * 109.47438 * 59.99953 * 16 15 14 43 43 H 0.97005 * 120.00357 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1970 0.0000 4 6 3.5799 1.1947 0.0005 5 6 4.2749 -0.0034 0.0016 6 6 3.5832 -1.2000 0.0016 7 6 2.1982 -1.1955 0.0005 8 6 4.5604 -2.3559 0.0035 9 6 5.9085 -1.7459 -0.4355 10 6 5.7643 -0.2732 0.0029 11 1 6.1728 -0.1356 1.0040 12 8 6.4270 0.5882 -0.9249 13 6 6.9135 1.8010 -0.3466 14 6 7.6014 2.6403 -1.4252 15 6 8.1227 3.9386 -0.8059 16 6 8.8100 4.7781 -1.8846 17 6 9.3230 6.0573 -1.2747 18 1 9.1734 6.2520 -0.2230 19 6 9.9833 6.9787 -2.0594 20 7 10.1652 6.7418 -3.3402 21 14 10.6186 8.5646 -1.3036 22 1 12.0052 8.3585 -0.8134 23 1 10.6103 9.6394 -2.3283 24 1 9.7454 8.9564 -0.1682 25 1 -0.3634 0.0004 1.0276 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3633 -0.8903 -0.5135 28 1 1.6600 2.1329 -0.0004 29 1 4.1198 2.1301 0.0001 30 1 1.6570 -2.1301 0.0002 31 1 4.2428 -3.1209 -0.7050 32 1 4.6452 -2.7798 1.0041 33 1 6.0327 -1.8177 -1.5160 34 1 6.7404 -2.2245 0.0811 35 1 6.0797 2.3627 0.0746 36 1 7.6287 1.5663 0.4417 37 1 8.4352 2.0784 -1.8461 38 1 6.8865 2.8751 -2.2139 39 1 7.2891 4.5007 -0.3848 40 1 8.8376 3.7036 -0.0175 41 1 9.6436 4.2164 -2.3061 42 1 8.0947 5.0132 -2.6728 43 1 10.6294 7.3903 -3.8924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224693175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:45 Heat of formation + Delta-G solvation = -70.611958 kcal Electronic energy + Delta-G solvation = -20129.015221 eV Core-core repulsion = 17136.905399 eV Total energy + Delta-G solvation = -2992.109822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.30884 -38.90575 -36.89895 -35.98297 -34.25427 -32.85192 -31.15389 -30.30726 -28.26756 -26.91385 -26.05019 -23.55080 -23.35975 -22.13963 -21.45212 -21.12816 -18.45361 -17.85107 -17.67729 -16.78246 -16.51097 -16.31783 -15.75229 -15.41213 -15.10685 -14.96434 -14.49690 -14.39919 -14.02106 -13.83329 -13.68017 -13.30735 -13.05984 -12.94071 -12.87179 -12.72167 -12.63947 -12.41197 -12.27526 -12.20511 -12.10756 -11.76072 -11.64542 -11.47096 -11.34346 -11.08891 -10.56985 -10.51153 -9.70868 -9.34735 -8.20863 -6.32794 0.33885 0.43639 1.39261 1.41273 1.52411 2.39814 2.58543 2.89127 3.11967 3.42025 3.58162 3.94708 3.96199 4.03083 4.06678 4.16708 4.22422 4.30233 4.41597 4.42476 4.56174 4.56851 4.63947 4.68010 4.78834 4.82418 4.84357 4.87355 5.01067 5.03569 5.13567 5.16977 5.23001 5.25594 5.26933 5.27755 5.48442 5.51457 5.65933 5.67103 5.73386 5.84260 6.08542 6.22927 6.28083 6.84558 7.36716 8.91308 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.026203 B = 0.002849 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.323893 B = 9826.789053 C =10582.520436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.090 4.090 3 C -0.137 4.137 4 C -0.111 4.111 5 C -0.148 4.148 6 C -0.097 4.097 7 C -0.118 4.118 8 C -0.073 4.073 9 C -0.113 4.113 10 C 0.118 3.882 11 H 0.083 0.917 12 O -0.393 6.393 13 C 0.070 3.930 14 C -0.108 4.108 15 C -0.094 4.094 16 C 0.023 3.977 17 C -0.545 4.545 18 H 0.062 0.938 19 C -0.004 4.004 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.262 1.262 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.111 0.889 30 H 0.143 0.857 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.058 0.942 41 H -0.009 1.009 42 H -0.011 1.011 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.620 -19.920 10.091 28.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.090 4.090 3 C -0.155 4.155 4 C -0.130 4.130 5 C -0.149 4.149 6 C -0.097 4.097 7 C -0.136 4.136 8 C -0.110 4.110 9 C -0.151 4.151 10 C 0.060 3.940 11 H 0.101 0.899 12 O -0.312 6.312 13 C -0.007 4.007 14 C -0.146 4.146 15 C -0.131 4.131 16 C -0.014 4.014 17 C -0.582 4.582 18 H 0.080 0.920 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.792 3.208 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.186 1.186 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.152 0.848 29 H 0.129 0.871 30 H 0.161 0.839 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.009 0.991 42 H 0.007 0.993 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.529 -19.899 9.746 28.253 hybrid contribution 0.581 1.386 0.032 1.504 sum -16.948 -18.513 9.778 26.937 Atomic orbital electron populations 1.20821 0.88947 1.03676 1.03227 1.20198 0.97618 0.92585 0.98558 1.21187 0.93470 0.98882 1.01927 1.20830 0.94798 0.97289 1.00034 1.21242 0.96940 0.94348 1.02327 1.20836 0.94291 0.95783 0.98805 1.20783 0.92492 0.98615 1.01709 1.21065 0.91074 0.95230 1.03634 1.22454 0.98691 0.91196 1.02717 1.21872 0.87201 0.91422 0.93465 0.89942 1.87959 1.75160 1.31217 1.36896 1.22579 0.97180 0.85077 0.95820 1.21455 0.99649 0.95471 0.98035 1.21351 0.99217 0.94200 0.98358 1.19016 0.94169 0.94110 0.94154 1.21728 1.36322 1.04248 0.95948 0.91951 1.26047 0.96320 1.02490 0.95271 1.70115 1.43246 1.37441 1.06785 0.85404 0.78926 0.78197 0.78262 1.19618 1.20724 1.18595 0.90071 0.91047 0.90292 0.84763 0.87135 0.83880 0.88746 0.88011 0.90722 0.87899 0.93065 0.92072 0.92279 0.92917 0.92729 0.92352 0.99090 0.99300 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.24 0.71 -0.63 16 2 C -0.09 -1.69 5.88 -19.89 -0.12 -1.81 16 3 C -0.14 -3.03 9.70 22.24 0.22 -2.82 16 4 C -0.11 -2.90 9.94 22.30 0.22 -2.68 16 5 C -0.15 -3.72 5.82 -19.59 -0.11 -3.83 16 6 C -0.10 -2.01 6.14 -19.60 -0.12 -2.13 16 7 C -0.12 -2.18 9.69 22.30 0.22 -1.96 16 8 C -0.07 -1.09 6.77 30.52 0.21 -0.88 16 9 C -0.11 -2.06 6.80 31.50 0.21 -1.85 16 10 C 0.12 2.83 3.33 30.51 0.10 2.93 16 11 H 0.08 1.78 7.83 -2.39 -0.02 1.76 16 12 O -0.39 -12.02 10.03 -148.98 -1.49 -13.52 16 13 C 0.07 2.11 5.79 71.98 0.42 2.53 16 14 C -0.11 -4.01 5.58 30.60 0.17 -3.84 16 15 C -0.09 -3.97 5.15 30.59 0.16 -3.82 16 16 C 0.02 1.24 4.97 29.85 0.15 1.39 16 17 C -0.54 -31.88 9.11 25.60 0.23 -31.64 16 18 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 19 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 20 N -0.94 -58.55 13.29 21.44 0.28 -58.26 16 21 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 25 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 27 H 0.08 0.76 8.09 -2.38 -0.02 0.74 16 28 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 29 H 0.11 2.97 6.50 -2.91 -0.02 2.95 16 30 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.53 8.11 -2.39 -0.02 1.51 16 34 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.05 1.49 6.48 -2.39 -0.02 1.47 16 36 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16 37 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 41 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 42 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 43 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -69.59 351.11 4.90 -64.69 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.96 Total: 10.87 kcal Atomic # 6 Polarization: -53.93 SS G_CDS: 3.13 Total: -50.80 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.28 Total: -58.26 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -1.49 Total: -13.52 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -69.59 4.90 -64.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224693175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.924 kcal (2) G-P(sol) polarization free energy of solvation -69.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds