Wall clock time and date at job start Mon Mar 30 2020 02:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38156 * 119.88952 * 2 1 4 4 C 1.38204 * 119.93310 * 180.02562 * 3 2 1 5 5 C 1.38148 * 119.93609 * 0.02562 * 4 3 2 6 6 C 1.38447 * 120.21490 * 359.97438 * 5 4 3 7 7 C 1.38268 * 119.85204 * 359.97438 * 6 5 4 8 8 C 1.51366 * 109.75148 * 179.97438 * 7 6 5 9 9 C 1.54350 * 105.17495 * 342.81042 * 8 7 6 10 10 C 1.51365 * 130.39643 * 179.97438 * 6 5 4 11 11 H 1.09001 * 110.38852 * 316.19217 * 10 6 5 12 12 O 1.42904 * 110.30302 * 78.30564 * 10 6 5 13 13 C 1.42905 * 113.99642 * 207.19998 * 12 10 6 14 14 C 1.53008 * 109.46671 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.46808 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.46929 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.47348 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99302 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00436 * 179.72505 * 17 16 15 20 20 N 1.31515 * 119.99684 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00405 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47154 * 89.99418 * 21 19 17 23 23 H 1.48493 * 109.47010 * 209.99942 * 21 19 17 24 24 H 1.48502 * 109.46736 * 329.99638 * 21 19 17 25 25 H 1.09003 * 109.46844 * 269.97745 * 1 2 3 26 26 H 1.08997 * 109.46759 * 29.97674 * 1 2 3 27 27 H 1.08990 * 109.46675 * 149.97965 * 1 2 3 28 28 H 1.07999 * 120.03314 * 0.02562 * 3 2 1 29 29 H 1.07998 * 120.03317 * 180.02562 * 4 3 2 30 30 H 1.08006 * 119.89269 * 179.97438 * 5 4 3 31 31 H 1.08996 * 110.30237 * 223.88589 * 8 7 6 32 32 H 1.09001 * 110.38492 * 101.77990 * 8 7 6 33 33 H 1.09001 * 110.82045 * 268.12889 * 9 8 7 34 34 H 1.08996 * 110.82179 * 144.57688 * 9 8 7 35 35 H 1.08996 * 109.46827 * 60.00229 * 13 12 10 36 36 H 1.08994 * 109.47493 * 299.99869 * 13 12 10 37 37 H 1.09000 * 109.46719 * 60.00279 * 14 13 12 38 38 H 1.08994 * 109.47402 * 300.00349 * 14 13 12 39 39 H 1.09000 * 109.47441 * 60.00491 * 15 14 13 40 40 H 1.09002 * 109.47087 * 299.99937 * 15 14 13 41 41 H 1.09001 * 109.47671 * 60.00109 * 16 15 14 42 42 H 1.08998 * 109.47454 * 300.00107 * 16 15 14 43 43 H 0.97004 * 120.00247 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1955 1.1978 0.0000 4 6 3.5776 1.1988 -0.0005 5 6 4.2679 0.0022 -0.0016 6 6 3.5797 -1.1991 -0.0016 7 6 2.1970 -1.2002 0.0000 8 6 1.6867 -2.6253 -0.0010 9 6 2.8897 -3.4850 -0.4436 10 6 4.0924 -2.6233 -0.0032 11 1 4.9140 -2.7304 -0.7115 12 8 4.5175 -2.9987 1.3085 13 6 5.5316 -4.0054 1.3249 14 6 5.9079 -4.3266 2.7728 15 6 6.9941 -5.4040 2.7904 16 6 7.3699 -5.7256 4.2382 17 6 8.4394 -6.7873 4.2556 18 1 8.8133 -7.1923 3.3268 19 6 8.9442 -7.2377 5.4569 20 7 8.4928 -6.7405 6.5877 21 14 10.2704 -8.5532 5.4785 22 1 11.6076 -7.9085 5.4422 23 1 10.1444 -9.3627 6.7169 24 1 10.1131 -9.4339 4.2932 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3632 -0.8897 -0.5141 28 1 1.6543 2.1324 0.0004 29 1 4.1174 2.1342 -0.0001 30 1 5.3479 0.0039 -0.0024 31 1 0.8647 -2.7321 -0.7088 32 1 1.3634 -2.9135 0.9993 33 1 2.8886 -3.6257 -1.5245 34 1 2.8911 -4.4447 0.0731 35 1 6.4114 -3.6435 0.7930 36 1 5.1576 -4.9060 0.8380 37 1 5.0282 -4.6884 3.3051 38 1 6.2821 -3.4259 3.2594 39 1 7.8737 -5.0418 2.2582 40 1 6.6202 -6.3048 2.3037 41 1 6.4902 -6.0880 4.7701 42 1 7.7436 -4.8250 4.7253 43 1 8.8481 -7.0572 7.4329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224693548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:20 Heat of formation + Delta-G solvation = -53.458641 kcal Electronic energy + Delta-G solvation = -20105.418020 eV Core-core repulsion = 17114.052021 eV Total energy + Delta-G solvation = -2991.365998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.51736 -37.91665 -35.36361 -34.21509 -33.10193 -32.19330 -29.18398 -28.81332 -27.35949 -26.40014 -24.67378 -22.33391 -21.59991 -21.15766 -20.42415 -19.86696 -16.89581 -16.49735 -16.17943 -15.59933 -15.52765 -15.01458 -14.71231 -14.42807 -14.04611 -13.85075 -13.39121 -13.09559 -12.90620 -12.51278 -12.40938 -12.30074 -12.00051 -11.77676 -11.62752 -11.49279 -11.22167 -11.02371 -10.97384 -10.83540 -10.64813 -10.50770 -10.38471 -9.65757 -9.43201 -9.29879 -9.03447 -8.79401 -8.67818 -8.31983 -5.96908 -3.99385 1.14461 1.22621 3.33470 3.39389 3.41891 3.43461 3.94433 4.25287 4.42248 4.48978 4.71202 4.78239 4.87089 4.92472 5.07663 5.13585 5.27853 5.36851 5.37864 5.39782 5.44221 5.46568 5.55508 5.59271 5.67365 5.76178 5.80473 5.85813 5.92148 6.06753 6.13408 6.19406 6.33660 6.36537 6.49530 6.52738 6.80697 6.84706 6.94525 7.12610 7.40093 7.71661 7.86831 8.03889 8.45976 9.08007 9.64414 11.14497 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.037182 B = 0.002587 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.862272 B =10818.727724 C =10999.783656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.082 4.082 3 C -0.115 4.115 4 C -0.123 4.123 5 C -0.094 4.094 6 C -0.093 4.093 7 C -0.080 4.080 8 C -0.077 4.077 9 C -0.144 4.144 10 C 0.127 3.873 11 H 0.069 0.931 12 O -0.372 6.372 13 C 0.061 3.939 14 C -0.116 4.116 15 C -0.107 4.107 16 C 0.021 3.979 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.339 14.145 -16.967 26.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.082 4.082 3 C -0.133 4.133 4 C -0.141 4.141 5 C -0.112 4.112 6 C -0.094 4.094 7 C -0.080 4.080 8 C -0.114 4.114 9 C -0.181 4.181 10 C 0.069 3.931 11 H 0.086 0.914 12 O -0.291 6.291 13 C -0.015 4.015 14 C -0.154 4.154 15 C -0.145 4.145 16 C -0.016 4.016 17 C -0.559 4.559 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.396 14.197 -16.607 26.728 hybrid contribution 0.979 -0.744 -0.040 1.230 sum -14.417 13.454 -16.648 25.807 Atomic orbital electron populations 1.20764 0.91329 1.02542 1.02346 1.19426 0.95904 0.91853 1.01046 1.20944 0.94288 0.97120 1.00930 1.21010 0.94267 0.97678 1.01149 1.20665 0.99979 0.91222 0.99324 1.20375 0.94155 0.93958 1.00874 1.20438 0.93995 0.94639 0.98924 1.20995 0.97966 0.90129 1.02308 1.22802 0.94770 0.99264 1.01292 1.21350 0.95909 0.89778 0.86103 0.91350 1.88025 1.57268 1.58263 1.25569 1.22776 0.89321 0.89897 0.99507 1.21637 1.00051 1.00310 0.93355 1.21574 0.95688 0.95771 1.01440 1.19092 0.96361 0.96529 0.89627 1.21274 1.20880 1.21474 0.92254 0.92728 1.25037 0.96946 0.96840 0.95738 1.69972 1.43059 1.43171 0.97315 0.86598 0.82163 0.81826 0.77436 1.20684 1.21225 1.19903 0.91176 0.91719 0.91590 0.85955 0.85800 0.86151 0.90809 0.89740 0.90342 0.89590 0.93607 0.93539 0.91707 0.91728 0.93358 0.93341 0.96545 0.96538 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.87 36.01 0.36 -0.49 16 2 C -0.08 -0.84 5.88 -104.57 -0.62 -1.46 16 3 C -0.11 -1.11 9.69 -39.62 -0.38 -1.49 16 4 C -0.12 -1.24 10.05 -39.63 -0.40 -1.63 16 5 C -0.09 -1.09 10.04 -39.54 -0.40 -1.49 16 6 C -0.09 -1.17 5.81 -104.21 -0.61 -1.78 16 7 C -0.08 -0.92 6.00 -104.21 -0.63 -1.55 16 8 C -0.08 -0.78 6.27 -26.85 -0.17 -0.94 16 9 C -0.14 -1.48 6.80 -25.31 -0.17 -1.65 16 10 C 0.13 1.57 3.32 -26.84 -0.09 1.49 16 11 H 0.07 0.77 7.84 -51.93 -0.41 0.37 16 12 O -0.37 -5.73 10.04 -35.23 -0.35 -6.09 16 13 C 0.06 0.92 5.79 37.16 0.22 1.14 16 14 C -0.12 -2.10 5.58 -26.73 -0.15 -2.25 16 15 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 16 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 17 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 21 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 27 H 0.07 0.45 7.29 -51.93 -0.38 0.07 16 28 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 31 H 0.07 0.59 7.62 -51.93 -0.40 0.20 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 352.67 15.07 5.31 5.31 Total: -1.00 -31.92 352.67 -10.52 -42.45 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -7.48 Total: -3.95 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -3.72 Total: -27.91 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.74 Total: -26.74 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.35 Total: -6.09 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.92 -10.52 -42.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224693548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.009 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds