Wall clock time and date at job start Mon Mar 30 2020 02:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38156 * 119.88952 * 2 1 4 4 C 1.38204 * 119.93310 * 180.02562 * 3 2 1 5 5 C 1.38148 * 119.93609 * 0.02562 * 4 3 2 6 6 C 1.38447 * 120.21490 * 359.97438 * 5 4 3 7 7 C 1.38268 * 119.85204 * 359.97438 * 6 5 4 8 8 C 1.51366 * 109.75148 * 179.97438 * 7 6 5 9 9 C 1.54350 * 105.17495 * 342.81042 * 8 7 6 10 10 C 1.51365 * 130.39643 * 179.97438 * 6 5 4 11 11 H 1.09001 * 110.38852 * 316.19217 * 10 6 5 12 12 O 1.42904 * 110.30302 * 78.30564 * 10 6 5 13 13 C 1.42905 * 113.99642 * 207.19998 * 12 10 6 14 14 C 1.53008 * 109.46671 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.46808 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.46929 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.47348 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99302 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00436 * 179.72505 * 17 16 15 20 20 N 1.31515 * 119.99684 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00405 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47154 * 89.99418 * 21 19 17 23 23 H 1.48493 * 109.47010 * 209.99942 * 21 19 17 24 24 H 1.48502 * 109.46736 * 329.99638 * 21 19 17 25 25 H 1.09003 * 109.46844 * 269.97745 * 1 2 3 26 26 H 1.08997 * 109.46759 * 29.97674 * 1 2 3 27 27 H 1.08990 * 109.46675 * 149.97965 * 1 2 3 28 28 H 1.07999 * 120.03314 * 0.02562 * 3 2 1 29 29 H 1.07998 * 120.03317 * 180.02562 * 4 3 2 30 30 H 1.08006 * 119.89269 * 179.97438 * 5 4 3 31 31 H 1.08996 * 110.30237 * 223.88589 * 8 7 6 32 32 H 1.09001 * 110.38492 * 101.77990 * 8 7 6 33 33 H 1.09001 * 110.82045 * 268.12889 * 9 8 7 34 34 H 1.08996 * 110.82179 * 144.57688 * 9 8 7 35 35 H 1.08996 * 109.46827 * 60.00229 * 13 12 10 36 36 H 1.08994 * 109.47493 * 299.99869 * 13 12 10 37 37 H 1.09000 * 109.46719 * 60.00279 * 14 13 12 38 38 H 1.08994 * 109.47402 * 300.00349 * 14 13 12 39 39 H 1.09000 * 109.47441 * 60.00491 * 15 14 13 40 40 H 1.09002 * 109.47087 * 299.99937 * 15 14 13 41 41 H 1.09001 * 109.47671 * 60.00109 * 16 15 14 42 42 H 1.08998 * 109.47454 * 300.00107 * 16 15 14 43 43 H 0.97004 * 120.00247 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1955 1.1978 0.0000 4 6 3.5776 1.1988 -0.0005 5 6 4.2679 0.0022 -0.0016 6 6 3.5797 -1.1991 -0.0016 7 6 2.1970 -1.2002 0.0000 8 6 1.6867 -2.6253 -0.0010 9 6 2.8897 -3.4850 -0.4436 10 6 4.0924 -2.6233 -0.0032 11 1 4.9140 -2.7304 -0.7115 12 8 4.5175 -2.9987 1.3085 13 6 5.5316 -4.0054 1.3249 14 6 5.9079 -4.3266 2.7728 15 6 6.9941 -5.4040 2.7904 16 6 7.3699 -5.7256 4.2382 17 6 8.4394 -6.7873 4.2556 18 1 8.8133 -7.1923 3.3268 19 6 8.9442 -7.2377 5.4569 20 7 8.4928 -6.7405 6.5877 21 14 10.2704 -8.5532 5.4785 22 1 11.6076 -7.9085 5.4422 23 1 10.1444 -9.3627 6.7169 24 1 10.1131 -9.4339 4.2932 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3632 -0.8897 -0.5141 28 1 1.6543 2.1324 0.0004 29 1 4.1174 2.1342 -0.0001 30 1 5.3479 0.0039 -0.0024 31 1 0.8647 -2.7321 -0.7088 32 1 1.3634 -2.9135 0.9993 33 1 2.8886 -3.6257 -1.5245 34 1 2.8911 -4.4447 0.0731 35 1 6.4114 -3.6435 0.7930 36 1 5.1576 -4.9060 0.8380 37 1 5.0282 -4.6884 3.3051 38 1 6.2821 -3.4259 3.2594 39 1 7.8737 -5.0418 2.2582 40 1 6.6202 -6.3048 2.3037 41 1 6.4902 -6.0880 4.7701 42 1 7.7436 -4.8250 4.7253 43 1 8.8481 -7.0572 7.4329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224693548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:14 Heat of formation + Delta-G solvation = -69.091048 kcal Electronic energy + Delta-G solvation = -20106.095892 eV Core-core repulsion = 17114.052021 eV Total energy + Delta-G solvation = -2992.043870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.33739 -38.96110 -36.69576 -35.63720 -34.25295 -33.74721 -30.55875 -29.95323 -28.24219 -27.24410 -26.44671 -23.59326 -22.82887 -22.07612 -21.74482 -21.02725 -18.44861 -17.91179 -17.29289 -16.83441 -16.52001 -16.30936 -16.00791 -15.54506 -15.18760 -14.86881 -14.45229 -14.26259 -13.94299 -13.89451 -13.58859 -13.35923 -13.09114 -12.96586 -12.90867 -12.78178 -12.53258 -12.38869 -12.18633 -12.10407 -12.05748 -11.75663 -11.62680 -11.45461 -11.33708 -11.09150 -10.56627 -10.51342 -9.61663 -9.45533 -8.20399 -6.32275 0.32809 0.43741 1.39748 1.41738 1.52897 2.40143 2.53539 3.01329 3.12501 3.43601 3.56932 3.98082 4.02723 4.06814 4.09966 4.14505 4.21858 4.35736 4.39435 4.45375 4.50774 4.60268 4.67054 4.69133 4.79157 4.83227 4.86538 4.88472 4.96292 5.05833 5.11699 5.15486 5.16465 5.25024 5.27907 5.35398 5.52446 5.55558 5.60042 5.72231 5.74349 5.85048 6.09526 6.23533 6.29898 6.85310 7.37240 8.91816 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.037182 B = 0.002587 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.862272 B =10818.727724 C =10999.783656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.119 4.119 4 C -0.128 4.128 5 C -0.114 4.114 6 C -0.121 4.121 7 C -0.096 4.096 8 C -0.076 4.076 9 C -0.140 4.140 10 C 0.119 3.881 11 H 0.077 0.923 12 O -0.394 6.394 13 C 0.071 3.929 14 C -0.109 4.109 15 C -0.093 4.093 16 C 0.022 3.978 17 C -0.544 4.544 18 H 0.063 0.937 19 C -0.005 4.005 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.261 1.261 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.058 0.942 41 H -0.010 1.010 42 H -0.012 1.012 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.708 14.127 -18.756 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.136 4.136 4 C -0.146 4.146 5 C -0.132 4.132 6 C -0.121 4.121 7 C -0.096 4.096 8 C -0.113 4.113 9 C -0.177 4.177 10 C 0.062 3.938 11 H 0.095 0.905 12 O -0.315 6.315 13 C -0.005 4.005 14 C -0.147 4.147 15 C -0.131 4.131 16 C -0.016 4.016 17 C -0.582 4.582 18 H 0.081 0.919 19 C -0.202 4.202 20 N -0.576 5.576 21 Si 0.792 3.208 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.185 1.185 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.166 0.834 29 H 0.163 0.837 30 H 0.140 0.860 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.008 0.992 42 H 0.007 0.993 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.773 14.187 -18.418 28.094 hybrid contribution 1.048 -0.642 0.536 1.340 sum -14.725 13.545 -17.882 26.834 Atomic orbital electron populations 1.20808 0.89417 1.03748 1.02829 1.19827 0.97481 0.91651 1.00247 1.21329 0.94334 0.98100 0.99872 1.21328 0.94841 0.98013 1.00400 1.20890 1.00387 0.91807 1.00164 1.20586 0.95005 0.94184 1.02315 1.20718 0.93855 0.95731 0.99278 1.21009 0.98513 0.89377 1.02353 1.22814 0.93828 0.98651 1.02436 1.21589 0.96988 0.90437 0.84798 0.90547 1.87974 1.57285 1.58333 1.27861 1.22563 0.90084 0.90841 0.97045 1.21455 0.98682 0.98760 0.95765 1.21346 0.96966 0.97174 0.97581 1.19026 0.94859 0.94854 0.92811 1.21733 1.21511 1.22088 0.92839 0.91860 1.26056 0.99535 0.99374 0.95236 1.70116 1.44648 1.44784 0.98097 0.85397 0.78804 0.78640 0.77909 1.19715 1.20748 1.18499 0.90929 0.90048 0.90923 0.83403 0.83682 0.85994 0.88669 0.90712 0.88341 0.89885 0.92498 0.91930 0.92594 0.92951 0.92516 0.92303 0.99187 0.99330 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 9.87 71.24 0.70 -0.73 16 2 C -0.09 -1.75 5.88 -19.83 -0.12 -1.87 16 3 C -0.12 -2.08 9.69 22.24 0.22 -1.86 16 4 C -0.13 -2.43 10.05 22.24 0.22 -2.21 16 5 C -0.11 -2.63 10.04 22.30 0.22 -2.41 16 6 C -0.12 -3.00 5.81 -19.60 -0.11 -3.11 16 7 C -0.10 -2.13 6.00 -19.60 -0.12 -2.24 16 8 C -0.08 -1.44 6.27 30.52 0.19 -1.25 16 9 C -0.14 -2.70 6.80 31.52 0.21 -2.49 16 10 C 0.12 2.89 3.32 30.52 0.10 2.99 16 11 H 0.08 1.66 7.84 -2.39 -0.02 1.65 16 12 O -0.39 -12.10 10.04 -148.98 -1.50 -13.60 16 13 C 0.07 2.08 5.79 71.98 0.42 2.50 16 14 C -0.11 -3.99 5.58 30.60 0.17 -3.82 16 15 C -0.09 -3.90 5.15 30.59 0.16 -3.74 16 16 C 0.02 1.18 4.97 29.85 0.15 1.33 16 17 C -0.54 -31.69 9.11 25.60 0.23 -31.45 16 18 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 19 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 20 N -0.94 -58.54 13.29 21.45 0.28 -58.25 16 21 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 27 H 0.07 0.83 7.29 -2.39 -0.02 0.81 16 28 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 29 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.12 2.60 8.06 -2.91 -0.02 2.57 16 31 H 0.09 1.35 7.62 -2.39 -0.02 1.33 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.64 8.10 -2.39 -0.02 1.62 16 35 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 36 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 39 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 41 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 42 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 43 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -69.39 352.67 4.88 -64.51 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.95 Total: 10.62 kcal Atomic # 6 Polarization: -53.29 SS G_CDS: 3.11 Total: -50.17 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.28 Total: -58.25 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -1.50 Total: -13.60 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -69.39 4.88 -64.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224693548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.585 kcal (2) G-P(sol) polarization free energy of solvation -69.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds