Wall clock time and date at job start Mon Mar 30 2020 02:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38145 * 119.89910 * 2 1 4 4 C 1.38209 * 119.93735 * 179.73003 * 3 2 1 5 5 C 1.38146 * 119.93209 * 359.97438 * 4 3 2 6 6 C 1.38452 * 120.21939 * 359.97438 * 5 4 3 7 7 C 1.38254 * 119.84767 * 0.04090 * 6 5 4 8 8 C 1.51365 * 109.75289 * 180.02562 * 7 6 5 9 9 C 1.54347 * 105.16795 * 342.77867 * 8 7 6 10 10 C 1.51370 * 130.39843 * 179.97438 * 6 5 4 11 11 H 1.08997 * 110.30279 * 78.27956 * 10 6 5 12 12 O 1.42897 * 110.30207 * 316.22663 * 10 6 5 13 13 C 1.42903 * 114.00301 * 150.00122 * 12 10 6 14 14 C 1.52994 * 109.47526 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47275 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47119 * 180.02562 * 15 14 13 17 17 C 1.50708 * 109.47007 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99619 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99958 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00149 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00218 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46860 * 89.99747 * 21 19 17 23 23 H 1.48494 * 109.47395 * 210.00134 * 21 19 17 24 24 H 1.48501 * 109.46789 * 330.00185 * 21 19 17 25 25 H 1.09002 * 109.47270 * 89.99837 * 1 2 3 26 26 H 1.09002 * 109.47391 * 210.00168 * 1 2 3 27 27 H 1.09002 * 109.46728 * 330.00421 * 1 2 3 28 28 H 1.08005 * 120.02800 * 359.70400 * 3 2 1 29 29 H 1.07994 * 120.02794 * 180.02562 * 4 3 2 30 30 H 1.08011 * 119.88878 * 179.97438 * 5 4 3 31 31 H 1.09005 * 110.29107 * 223.86192 * 8 7 6 32 32 H 1.09003 * 110.40430 * 101.74877 * 8 7 6 33 33 H 1.09004 * 110.81817 * 268.14273 * 9 8 7 34 34 H 1.08997 * 110.82373 * 144.59580 * 9 8 7 35 35 H 1.09002 * 109.46545 * 300.00396 * 13 12 10 36 36 H 1.08997 * 109.46497 * 59.99688 * 13 12 10 37 37 H 1.08996 * 109.47133 * 300.00148 * 14 13 12 38 38 H 1.09007 * 109.46882 * 60.00076 * 14 13 12 39 39 H 1.09005 * 109.47258 * 300.00455 * 15 14 13 40 40 H 1.08997 * 109.47014 * 60.00258 * 15 14 13 41 41 H 1.08997 * 109.47092 * 299.99308 * 16 15 14 42 42 H 1.08997 * 109.47616 * 60.00453 * 16 15 14 43 43 H 0.96996 * 120.00369 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1976 0.0000 4 6 3.5777 1.1985 0.0056 5 6 4.2678 0.0018 0.0118 6 6 3.5795 -1.1995 0.0129 7 6 2.1970 -1.2004 0.0069 8 6 1.6863 -2.6253 0.0102 9 6 2.8915 -3.4872 -0.4224 10 6 4.0920 -2.6238 0.0186 11 1 4.4121 -2.9066 1.0214 12 8 5.1735 -2.7652 -0.9046 13 6 6.1284 -3.7614 -0.5332 14 6 7.2347 -3.8260 -1.5879 15 6 8.2573 -4.8921 -1.1899 16 6 9.3640 -4.9562 -2.2444 17 6 10.3710 -6.0068 -1.8525 18 1 10.2349 -6.5725 -0.9426 19 6 11.4653 -6.2465 -2.6562 20 7 12.3438 -7.1636 -2.3146 21 14 11.7003 -5.2686 -4.2303 22 1 12.4927 -4.0467 -3.9403 23 1 12.4207 -6.1008 -5.2272 24 1 10.3742 -4.8810 -4.7748 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6544 2.1322 -0.0048 29 1 4.1175 2.1339 0.0061 30 1 5.3479 0.0033 0.0158 31 1 0.8679 -2.7352 -0.7014 32 1 1.3580 -2.9091 1.0101 33 1 2.8958 -3.6328 -1.5027 34 1 2.8901 -4.4446 0.0986 35 1 6.5621 -3.5062 0.4338 36 1 5.6344 -4.7307 -0.4654 37 1 6.8007 -4.0813 -2.5546 38 1 7.7287 -2.8567 -1.6561 39 1 8.6913 -4.6363 -0.2232 40 1 7.7637 -5.8614 -1.1214 41 1 8.9303 -5.2119 -3.2111 42 1 9.8577 -3.9868 -2.3124 43 1 13.1139 -7.3321 -2.8797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224693549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:24 Heat of formation + Delta-G solvation = -51.237273 kcal Electronic energy + Delta-G solvation = -20090.893581 eV Core-core repulsion = 17099.623909 eV Total energy + Delta-G solvation = -2991.269672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.54927 -37.96709 -35.51786 -34.41095 -33.10798 -32.22485 -29.31362 -29.22866 -27.33208 -26.45647 -24.70657 -22.33817 -21.57696 -21.17161 -20.45927 -19.91719 -16.86790 -16.68063 -16.49472 -15.80494 -15.51963 -15.06494 -14.66413 -14.29201 -14.02963 -13.77979 -13.77241 -13.14598 -12.83859 -12.55466 -12.51599 -12.41111 -12.28417 -12.05677 -11.82581 -11.53503 -11.38759 -11.21740 -11.07133 -10.88609 -10.69295 -10.60775 -9.89162 -9.69029 -9.56808 -9.51863 -9.14873 -8.76696 -8.72649 -8.51113 -6.01894 -3.99690 1.12882 1.18349 3.33521 3.40604 3.42928 3.45595 3.84094 4.17818 4.31201 4.48183 4.67154 4.73693 4.83133 4.91209 5.00876 5.06917 5.18776 5.29991 5.32259 5.33623 5.37724 5.41257 5.49392 5.53441 5.58327 5.68956 5.69766 5.83402 5.87855 5.99757 6.02409 6.06989 6.31078 6.32892 6.36504 6.47662 6.64439 6.74142 6.81142 6.92021 7.31099 7.34625 7.47268 7.82601 8.56688 9.02941 9.61002 11.11613 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.035909 B = 0.002712 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.569453 B =10321.607288 C =10732.486278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.080 4.080 3 C -0.118 4.118 4 C -0.121 4.121 5 C -0.092 4.092 6 C -0.091 4.091 7 C -0.091 4.091 8 C -0.079 4.079 9 C -0.141 4.141 10 C 0.126 3.874 11 H 0.076 0.924 12 O -0.375 6.375 13 C 0.061 3.939 14 C -0.119 4.119 15 C -0.100 4.100 16 C -0.014 4.014 17 C -0.520 4.520 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.905 5.905 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.265 1.265 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.016 0.984 42 H 0.012 0.988 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.182 14.941 6.255 29.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.080 4.080 3 C -0.136 4.136 4 C -0.139 4.139 5 C -0.110 4.110 6 C -0.091 4.091 7 C -0.091 4.091 8 C -0.116 4.116 9 C -0.179 4.179 10 C 0.068 3.932 11 H 0.094 0.906 12 O -0.294 6.294 13 C -0.016 4.016 14 C -0.156 4.156 15 C -0.137 4.137 16 C -0.051 4.051 17 C -0.558 4.558 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.544 5.544 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.189 1.189 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.998 14.952 6.031 29.746 hybrid contribution 0.387 0.333 -0.593 0.782 sum -24.611 15.285 5.438 29.477 Atomic orbital electron populations 1.20759 0.91337 1.02599 1.02259 1.19399 0.95832 0.91815 1.00957 1.20940 0.94302 0.97113 1.01272 1.21051 0.94241 0.97793 1.00810 1.20674 1.00279 0.91055 0.98958 1.20414 0.93938 0.94240 1.00484 1.20318 0.93833 0.94601 1.00380 1.20976 0.98259 0.90330 1.01993 1.22834 0.93683 0.98311 1.03050 1.21502 0.87466 0.90849 0.93341 0.90640 1.88004 1.35200 1.58778 1.47456 1.22744 0.89765 0.90512 0.98538 1.21664 0.95026 1.00893 0.98056 1.21396 0.95641 0.96499 1.00199 1.19568 0.93999 0.96903 0.94663 1.21173 1.06039 1.19289 1.09316 0.91090 1.25046 0.95701 0.94993 0.97894 1.69918 1.12811 1.33051 1.38663 0.86761 0.78651 0.80156 0.83638 1.20310 1.21430 1.18942 0.91262 0.91610 0.91655 0.85977 0.85791 0.85881 0.90503 0.90114 0.89643 0.90228 0.93438 0.93385 0.91686 0.91734 0.92751 0.92705 0.96577 0.97015 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 9.87 36.00 0.36 -0.40 16 2 C -0.08 -0.76 5.88 -104.57 -0.62 -1.38 16 3 C -0.12 -1.09 9.69 -39.63 -0.38 -1.48 16 4 C -0.12 -1.20 10.05 -39.63 -0.40 -1.60 16 5 C -0.09 -1.07 10.02 -39.54 -0.40 -1.47 16 6 C -0.09 -1.10 5.82 -104.21 -0.61 -1.70 16 7 C -0.09 -0.97 6.00 -104.21 -0.63 -1.59 16 8 C -0.08 -0.68 6.11 -26.85 -0.16 -0.84 16 9 C -0.14 -1.39 6.80 -25.34 -0.17 -1.57 16 10 C 0.13 1.50 3.34 -26.87 -0.09 1.42 16 11 H 0.08 0.82 7.81 -51.93 -0.41 0.42 16 12 O -0.38 -5.47 10.03 -35.23 -0.35 -5.82 16 13 C 0.06 0.87 5.78 37.15 0.21 1.08 16 14 C -0.12 -2.00 5.58 -26.74 -0.15 -2.15 16 15 C -0.10 -1.98 5.15 -26.73 -0.14 -2.12 16 16 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 17 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 18 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 19 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.91 -28.35 13.96 55.43 0.77 -27.57 16 21 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 27 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 28 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 29 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 42 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 43 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -32.14 349.78 -10.18 -42.32 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -7.49 Total: -3.81 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -3.71 Total: -27.90 kcal Atomic # 7 Polarization: -28.35 SS G_CDS: 0.77 Total: -27.57 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.35 Total: -5.82 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.14 -10.18 -42.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224693549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.913 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds