Wall clock time and date at job start Mon Mar 30 2020 02:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38145 * 119.89910 * 2 1 4 4 C 1.38209 * 119.93735 * 179.73003 * 3 2 1 5 5 C 1.38146 * 119.93209 * 359.97438 * 4 3 2 6 6 C 1.38452 * 120.21939 * 359.97438 * 5 4 3 7 7 C 1.38254 * 119.84767 * 0.04090 * 6 5 4 8 8 C 1.51365 * 109.75289 * 180.02562 * 7 6 5 9 9 C 1.54347 * 105.16795 * 342.77867 * 8 7 6 10 10 C 1.51370 * 130.39843 * 179.97438 * 6 5 4 11 11 H 1.08997 * 110.30279 * 78.27956 * 10 6 5 12 12 O 1.42897 * 110.30207 * 316.22663 * 10 6 5 13 13 C 1.42903 * 114.00301 * 150.00122 * 12 10 6 14 14 C 1.52994 * 109.47526 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47275 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47119 * 180.02562 * 15 14 13 17 17 C 1.50708 * 109.47007 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99619 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99958 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00149 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00218 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46860 * 89.99747 * 21 19 17 23 23 H 1.48494 * 109.47395 * 210.00134 * 21 19 17 24 24 H 1.48501 * 109.46789 * 330.00185 * 21 19 17 25 25 H 1.09002 * 109.47270 * 89.99837 * 1 2 3 26 26 H 1.09002 * 109.47391 * 210.00168 * 1 2 3 27 27 H 1.09002 * 109.46728 * 330.00421 * 1 2 3 28 28 H 1.08005 * 120.02800 * 359.70400 * 3 2 1 29 29 H 1.07994 * 120.02794 * 180.02562 * 4 3 2 30 30 H 1.08011 * 119.88878 * 179.97438 * 5 4 3 31 31 H 1.09005 * 110.29107 * 223.86192 * 8 7 6 32 32 H 1.09003 * 110.40430 * 101.74877 * 8 7 6 33 33 H 1.09004 * 110.81817 * 268.14273 * 9 8 7 34 34 H 1.08997 * 110.82373 * 144.59580 * 9 8 7 35 35 H 1.09002 * 109.46545 * 300.00396 * 13 12 10 36 36 H 1.08997 * 109.46497 * 59.99688 * 13 12 10 37 37 H 1.08996 * 109.47133 * 300.00148 * 14 13 12 38 38 H 1.09007 * 109.46882 * 60.00076 * 14 13 12 39 39 H 1.09005 * 109.47258 * 300.00455 * 15 14 13 40 40 H 1.08997 * 109.47014 * 60.00258 * 15 14 13 41 41 H 1.08997 * 109.47092 * 299.99308 * 16 15 14 42 42 H 1.08997 * 109.47616 * 60.00453 * 16 15 14 43 43 H 0.96996 * 120.00369 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1976 0.0000 4 6 3.5777 1.1985 0.0056 5 6 4.2678 0.0018 0.0118 6 6 3.5795 -1.1995 0.0129 7 6 2.1970 -1.2004 0.0069 8 6 1.6863 -2.6253 0.0102 9 6 2.8915 -3.4872 -0.4224 10 6 4.0920 -2.6238 0.0186 11 1 4.4121 -2.9066 1.0214 12 8 5.1735 -2.7652 -0.9046 13 6 6.1284 -3.7614 -0.5332 14 6 7.2347 -3.8260 -1.5879 15 6 8.2573 -4.8921 -1.1899 16 6 9.3640 -4.9562 -2.2444 17 6 10.3710 -6.0068 -1.8525 18 1 10.2349 -6.5725 -0.9426 19 6 11.4653 -6.2465 -2.6562 20 7 12.3438 -7.1636 -2.3146 21 14 11.7003 -5.2686 -4.2303 22 1 12.4927 -4.0467 -3.9403 23 1 12.4207 -6.1008 -5.2272 24 1 10.3742 -4.8810 -4.7748 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6544 2.1322 -0.0048 29 1 4.1175 2.1339 0.0061 30 1 5.3479 0.0033 0.0158 31 1 0.8679 -2.7352 -0.7014 32 1 1.3580 -2.9091 1.0101 33 1 2.8958 -3.6328 -1.5027 34 1 2.8901 -4.4446 0.0986 35 1 6.5621 -3.5062 0.4338 36 1 5.6344 -4.7307 -0.4654 37 1 6.8007 -4.0813 -2.5546 38 1 7.7287 -2.8567 -1.6561 39 1 8.6913 -4.6363 -0.2232 40 1 7.7637 -5.8614 -1.1214 41 1 8.9303 -5.2119 -3.2111 42 1 9.8577 -3.9868 -2.3124 43 1 13.1139 -7.3321 -2.8797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224693549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:23 Heat of formation + Delta-G solvation = -67.643324 kcal Electronic energy + Delta-G solvation = -20091.605001 eV Core-core repulsion = 17099.623909 eV Total energy + Delta-G solvation = -2991.981092 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.31886 -38.96242 -36.73141 -35.74778 -34.33465 -33.72828 -30.99546 -29.96894 -28.17275 -27.24486 -26.32978 -23.25568 -22.95551 -22.05174 -21.74951 -21.04728 -18.86838 -17.82985 -17.33335 -16.91834 -16.38768 -16.28781 -15.95407 -15.43249 -15.23042 -14.89465 -14.74396 -14.38282 -13.96370 -13.83903 -13.63894 -13.52972 -13.08140 -13.05512 -12.94972 -12.77170 -12.66217 -12.37368 -12.18259 -12.00219 -11.82427 -11.75236 -11.61696 -11.45102 -11.37719 -11.27890 -10.77079 -10.55520 -9.54241 -9.45199 -8.30308 -6.34313 0.35925 0.43176 1.35407 1.37056 1.49694 2.35799 2.57431 2.91753 3.04951 3.43831 3.54417 3.98217 4.02371 4.06773 4.11057 4.13245 4.19966 4.28860 4.40255 4.44045 4.51508 4.56745 4.61323 4.70310 4.79242 4.85526 4.85635 4.87143 4.94819 5.05705 5.09496 5.11190 5.16414 5.16565 5.19842 5.35848 5.52829 5.56494 5.59989 5.61232 5.66573 5.70934 6.09338 6.26436 6.30157 6.73602 7.30466 8.86451 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.035909 B = 0.002712 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.569453 B =10321.607288 C =10732.486278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.087 4.087 3 C -0.122 4.122 4 C -0.128 4.128 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.102 4.102 8 C -0.073 4.073 9 C -0.139 4.139 10 C 0.119 3.881 11 H 0.081 0.919 12 O -0.394 6.394 13 C 0.067 3.933 14 C -0.110 4.110 15 C -0.092 4.092 16 C -0.014 4.014 17 C -0.534 4.534 18 H 0.033 0.967 19 C 0.002 3.998 20 N -0.952 5.952 21 Si 0.952 3.048 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.248 1.248 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.147 0.853 29 H 0.142 0.858 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.017 0.983 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.486 16.584 5.644 32.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.087 4.087 3 C -0.140 4.140 4 C -0.145 4.145 5 C -0.134 4.134 6 C -0.118 4.118 7 C -0.102 4.102 8 C -0.110 4.110 9 C -0.176 4.176 10 C 0.062 3.938 11 H 0.099 0.901 12 O -0.313 6.313 13 C -0.009 4.009 14 C -0.147 4.147 15 C -0.129 4.129 16 C -0.051 4.051 17 C -0.572 4.572 18 H 0.051 0.949 19 C -0.195 4.195 20 N -0.592 5.592 21 Si 0.775 3.225 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.171 1.171 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.165 0.835 29 H 0.159 0.841 30 H 0.132 0.868 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.035 0.965 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -27.324 16.602 5.433 32.431 hybrid contribution 1.088 -0.185 -0.317 1.148 sum -26.236 16.417 5.116 31.369 Atomic orbital electron populations 1.20809 0.89211 1.03742 1.02996 1.19809 0.97499 0.91515 0.99903 1.21309 0.94141 0.98254 1.00271 1.21317 0.94961 0.97895 1.00365 1.20806 1.00157 0.91992 1.00451 1.20619 0.94999 0.94299 1.01887 1.20630 0.93379 0.95984 1.00248 1.21003 0.97902 0.88832 1.03257 1.22828 0.93355 0.98960 1.02475 1.21736 0.87317 0.91583 0.93174 0.90105 1.87957 1.35985 1.58821 1.48582 1.22576 0.89367 0.91260 0.97708 1.21474 0.95016 0.99430 0.98815 1.21236 0.95196 0.97755 0.98761 1.19545 0.94199 0.95332 0.96015 1.21537 1.07474 1.20049 1.08115 0.94863 1.26048 0.95309 0.96165 1.01965 1.70067 1.13685 1.35004 1.40488 0.85633 0.79449 0.78672 0.78760 1.19155 1.20819 1.17139 0.90583 0.90813 0.90258 0.83479 0.84057 0.86764 0.89173 0.88458 0.90802 0.88653 0.92766 0.92254 0.91745 0.91900 0.92924 0.92753 0.96273 0.96463 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.87 71.24 0.70 -0.47 16 2 C -0.09 -1.49 5.88 -19.83 -0.12 -1.61 16 3 C -0.12 -2.02 9.69 22.24 0.22 -1.81 16 4 C -0.13 -2.42 10.05 22.24 0.22 -2.20 16 5 C -0.12 -2.72 10.02 22.30 0.22 -2.50 16 6 C -0.12 -2.80 5.82 -19.60 -0.11 -2.92 16 7 C -0.10 -2.03 6.00 -19.60 -0.12 -2.15 16 8 C -0.07 -1.11 6.11 30.52 0.19 -0.92 16 9 C -0.14 -2.53 6.80 31.50 0.21 -2.32 16 10 C 0.12 2.76 3.34 30.51 0.10 2.86 16 11 H 0.08 1.71 7.81 -2.39 -0.02 1.69 16 12 O -0.39 -11.25 10.03 -148.98 -1.49 -12.75 16 13 C 0.07 1.85 5.78 71.98 0.42 2.26 16 14 C -0.11 -3.58 5.58 30.59 0.17 -3.41 16 15 C -0.09 -3.61 5.15 30.59 0.16 -3.45 16 16 C -0.01 -0.65 4.04 29.85 0.12 -0.53 16 17 C -0.53 -31.61 9.66 25.60 0.25 -31.36 16 18 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 19 C 0.00 0.10 5.47 84.65 0.46 0.56 16 20 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 21 Si 0.95 45.41 27.47 68.60 1.88 47.29 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 25 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.67 7.67 -2.39 -0.02 0.65 16 27 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 28 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 29 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 30 H 0.11 2.72 8.06 -2.90 -0.02 2.70 16 31 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.52 8.11 -2.38 -0.02 1.50 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 1.41 8.10 -2.39 -0.02 1.39 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 42 H 0.02 0.80 7.57 -2.39 -0.02 0.79 16 43 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -69.90 349.78 4.68 -65.22 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.90 Total: 10.71 kcal Atomic # 6 Polarization: -53.05 SS G_CDS: 3.09 Total: -49.96 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 0.30 Total: -60.52 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -1.49 Total: -12.75 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Total: -69.90 4.68 -65.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224693549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.420 kcal (2) G-P(sol) polarization free energy of solvation -69.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds