Wall clock time and date at job start Mon Mar 30 2020 02:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 112.84854 * 2 1 4 4 C 1.53780 * 113.61602 * 131.19722 * 2 1 3 5 5 C 1.53783 * 87.07983 * 89.11286 * 4 2 1 6 6 C 1.52998 * 113.61085 * 139.98387 * 5 4 2 7 7 O 1.42896 * 109.47357 * 176.52910 * 6 5 4 8 8 C 1.42896 * 114.00446 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.46984 * 330.00066 * 8 7 6 10 10 C 1.50703 * 109.47055 * 89.99977 * 8 7 6 11 11 H 1.07998 * 120.00275 * 240.00088 * 10 8 7 12 12 C 1.37874 * 119.99789 * 59.99941 * 10 8 7 13 13 N 1.31518 * 120.00144 * 0.02562 * 12 10 8 14 14 Si 1.86806 * 120.00024 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47037 * 89.99806 * 14 12 10 16 16 H 1.48498 * 109.47434 * 210.00303 * 14 12 10 17 17 H 1.48498 * 109.46918 * 330.00275 * 14 12 10 18 18 C 1.50701 * 109.47417 * 210.00046 * 8 7 6 19 19 C 1.38237 * 119.99605 * 324.72893 * 18 8 7 20 20 C 1.38236 * 119.99544 * 179.81222 * 19 18 8 21 21 C 1.38237 * 120.00196 * 0.39148 * 20 19 18 22 22 C 1.38230 * 119.99861 * 359.86039 * 21 20 19 23 23 C 1.38229 * 120.00169 * 145.00304 * 18 8 7 24 24 C 1.53777 * 87.17202 * 25.39160 * 5 4 2 25 25 H 1.08999 * 109.46575 * 288.80787 * 1 2 3 26 26 H 1.09001 * 109.46803 * 48.80292 * 1 2 3 27 27 H 1.08997 * 109.47447 * 168.80423 * 1 2 3 28 28 H 1.09007 * 109.47035 * 191.20094 * 3 2 1 29 29 H 1.09007 * 109.47439 * 311.19306 * 3 2 1 30 30 H 1.08996 * 109.47451 * 71.19485 * 3 2 1 31 31 H 1.09003 * 113.61065 * 334.56170 * 4 2 1 32 32 H 1.08995 * 113.61641 * 203.66558 * 4 2 1 33 33 H 1.08992 * 113.61608 * 270.79786 * 5 4 2 34 34 H 1.08999 * 109.47594 * 56.52486 * 6 5 4 35 35 H 1.09000 * 109.47045 * 296.52764 * 6 5 4 36 36 H 0.97007 * 119.99867 * 179.97438 * 13 12 10 37 37 H 1.08002 * 120.00277 * 359.97438 * 19 18 8 38 38 H 1.08001 * 119.99795 * 180.23017 * 20 19 18 39 39 H 1.08002 * 120.00265 * 179.83609 * 21 20 19 40 40 H 1.08000 * 120.00485 * 179.97438 * 22 21 20 41 41 H 1.08003 * 119.99905 * 359.97433 * 23 18 8 42 42 H 1.09000 * 113.61586 * 89.15564 * 24 5 4 43 43 H 1.09000 * 113.61322 * 220.05454 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9280 1.0602 5 6 2.0929 -2.0425 0.0019 6 6 3.3263 -2.9478 0.0028 7 8 3.1495 -3.9948 -0.9534 8 6 4.2511 -4.9015 -1.0331 9 1 5.1732 -4.3755 -0.7855 10 6 4.0416 -6.0333 -0.0604 11 1 4.7597 -6.2086 0.7270 12 6 2.9331 -6.8450 -0.1757 13 7 2.0589 -6.6319 -1.1348 14 14 2.6737 -8.2485 1.0296 15 1 1.8894 -7.7629 2.1933 16 1 1.9345 -9.3475 0.3581 17 1 3.9913 -8.7506 1.4956 18 6 4.3477 -5.4530 -2.4323 19 6 3.1979 -5.6968 -3.1599 20 6 3.2866 -6.1990 -4.4448 21 6 4.5248 -6.4650 -4.9990 22 6 5.6743 -6.2261 -4.2694 23 6 5.5857 -5.7203 -2.9859 24 6 2.1448 -0.9317 -1.0602 25 1 -0.3632 0.3313 0.9728 26 1 -0.3633 0.6769 -0.7733 27 1 -0.3634 -1.0081 -0.1995 28 1 3.1943 1.3533 -0.1996 29 1 1.6415 2.0077 -0.7733 30 1 1.9600 1.8734 0.9727 31 1 1.4946 -1.1067 1.9156 32 1 3.1591 -0.6486 1.3496 33 1 1.1575 -2.6019 0.0035 34 1 3.4591 -3.3801 0.9945 35 1 4.2073 -2.3617 -0.2590 36 1 1.2792 -7.2033 -1.2161 37 1 2.2304 -5.4925 -2.7256 38 1 2.3884 -6.3860 -5.0146 39 1 4.5940 -6.8599 -6.0018 40 1 6.6416 -6.4342 -4.7022 41 1 6.4839 -5.5336 -2.4159 42 1 3.1575 -0.6532 -1.3517 43 1 1.4923 -1.1135 -1.9143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224769021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:28 Heat of formation + Delta-G solvation = -9.400781 kcal Electronic energy + Delta-G solvation = -21473.421891 eV Core-core repulsion = 18483.966385 eV Total energy + Delta-G solvation = -2989.455506 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.47743 -38.15806 -36.05545 -32.85451 -31.11693 -30.16795 -29.54279 -27.35697 -26.80331 -25.48980 -25.30582 -22.73531 -21.31882 -20.26382 -19.93666 -18.02092 -16.68451 -15.80520 -15.30242 -15.03773 -14.62232 -14.39549 -14.07766 -13.78265 -13.68010 -13.18586 -12.88454 -12.75923 -12.57544 -12.27791 -11.91680 -11.77461 -11.66049 -11.47200 -11.34525 -11.03708 -10.92351 -10.83428 -10.45684 -10.39348 -10.09435 -9.98942 -9.78555 -9.74311 -9.44976 -9.13107 -8.69292 -8.01190 -7.68088 -7.37343 -5.90689 -4.24010 2.53554 2.69003 3.26345 3.33207 3.35963 4.36026 4.63829 4.76596 4.92073 5.00164 5.10226 5.26166 5.38275 5.47949 5.67800 5.71201 5.84423 5.86989 5.93717 5.98558 6.01848 6.04779 6.08724 6.09164 6.13766 6.18802 6.34687 6.37896 6.43189 6.47699 6.59062 6.66570 6.79821 6.88557 6.96976 7.00442 7.18915 7.36330 7.57750 7.68473 7.91560 8.10599 8.14473 8.37438 8.61696 9.03090 9.51343 10.93367 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014897 B = 0.005798 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.134544 B = 4828.345999 C = 5955.189959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.094 4.094 3 C -0.133 4.133 4 C -0.125 4.125 5 C -0.099 4.099 6 C 0.083 3.917 7 O -0.366 6.366 8 C 0.245 3.755 9 H 0.014 0.986 10 C -0.543 4.543 11 H 0.058 0.942 12 C 0.085 3.915 13 N -0.847 5.847 14 Si 0.889 3.111 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.040 4.040 19 C -0.043 4.043 20 C -0.155 4.155 21 C -0.147 4.147 22 C -0.151 4.151 23 C -0.131 4.131 24 C -0.121 4.121 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.039 0.961 35 H 0.022 0.978 36 H 0.261 0.739 37 H 0.165 0.835 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.076 0.924 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.625 10.068 -0.342 10.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.094 4.094 3 C -0.190 4.190 4 C -0.163 4.163 5 C -0.117 4.117 6 C 0.005 3.995 7 O -0.286 6.286 8 C 0.189 3.811 9 H 0.032 0.968 10 C -0.580 4.580 11 H 0.077 0.923 12 C -0.121 4.121 13 N -0.483 5.483 14 Si 0.717 3.283 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.040 4.040 19 C -0.062 4.062 20 C -0.173 4.173 21 C -0.165 4.165 22 C -0.169 4.169 23 C -0.149 4.149 24 C -0.158 4.158 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.057 0.943 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.182 0.818 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.095 0.905 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.965 9.972 -0.521 10.032 hybrid contribution 0.181 -1.119 0.799 1.386 sum -0.784 8.853 0.278 8.892 Atomic orbital electron populations 1.21578 0.93521 1.02114 1.01174 1.21833 0.95374 0.94111 0.98082 1.21716 1.00450 0.95775 1.01087 1.23040 1.00657 0.96067 0.96524 1.22409 0.99949 0.93731 0.95623 1.22066 0.94505 0.89047 0.93856 1.88002 1.43760 1.38737 1.58073 1.18519 0.84979 0.87893 0.89702 0.96788 1.21434 1.08318 1.14649 1.13626 0.92346 1.24965 0.95673 0.96649 0.94789 1.69826 1.11157 1.37733 1.29546 0.86654 0.78365 0.81972 0.81344 1.20512 1.21036 1.19916 1.20025 0.92226 0.97189 0.94587 1.21874 1.01456 0.92542 0.90289 1.21156 0.96140 1.03165 0.96889 1.20804 0.93369 1.03410 0.98959 1.20687 0.97134 1.03645 0.95448 1.20793 0.97049 1.02005 0.95069 1.23099 1.00561 0.95514 0.96627 0.92828 0.92778 0.92073 0.92688 0.92984 0.92999 0.91799 0.90407 0.88749 0.94331 0.95980 0.92877 0.81820 0.88120 0.88366 0.88104 0.87941 0.90531 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 9.07 37.16 0.34 -1.13 16 2 C -0.09 -1.18 1.39 -153.60 -0.21 -1.39 16 3 C -0.13 -1.43 9.20 37.16 0.34 -1.09 16 4 C -0.13 -1.72 6.79 -25.92 -0.18 -1.90 16 5 C -0.10 -1.67 3.65 -89.81 -0.33 -2.00 16 6 C 0.08 1.67 5.56 37.16 0.21 1.87 16 7 O -0.37 -8.91 8.53 -35.23 -0.30 -9.21 16 8 C 0.24 6.14 2.59 -29.03 -0.08 6.07 16 9 H 0.01 0.34 7.70 -51.93 -0.40 -0.06 16 10 C -0.54 -14.64 8.89 -34.44 -0.31 -14.95 16 11 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 12 C 0.08 2.27 5.24 -17.82 -0.09 2.18 16 13 N -0.85 -22.84 8.50 55.43 0.47 -22.37 16 14 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 C -0.04 -0.97 4.80 -104.62 -0.50 -1.47 16 19 C -0.04 -1.04 7.46 -39.58 -0.30 -1.33 16 20 C -0.16 -3.34 10.05 -39.58 -0.40 -3.73 16 21 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 22 C -0.15 -3.02 10.05 -39.58 -0.40 -3.41 16 23 C -0.13 -2.89 9.68 -39.58 -0.38 -3.27 16 24 C -0.12 -1.80 6.76 -25.83 -0.17 -1.97 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.77 7.34 -51.93 -0.38 0.39 16 28 H 0.05 0.59 7.96 -51.92 -0.41 0.17 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 32 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 33 H 0.09 1.74 7.66 -51.93 -0.40 1.34 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.02 0.42 7.82 -51.93 -0.41 0.01 16 36 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 37 H 0.16 4.30 5.50 -52.49 -0.29 4.01 16 38 H 0.10 1.94 8.06 -52.49 -0.42 1.51 16 39 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 41 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 42 H 0.08 1.13 7.75 -51.93 -0.40 0.73 16 43 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 344.16 15.07 5.19 5.19 Total: -1.00 -27.67 344.16 -9.82 -37.48 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.30 Total: 3.88 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: -2.86 Total: -30.86 kcal Atomic # 7 Polarization: -22.84 SS G_CDS: 0.47 Total: -22.37 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.30 Total: -9.21 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.67 -9.82 -37.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224769021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.084 kcal (2) G-P(sol) polarization free energy of solvation -27.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds