Wall clock time and date at job start Mon Mar 30 2020 02:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 112.84854 * 2 1 4 4 C 1.53780 * 113.61602 * 131.19722 * 2 1 3 5 5 C 1.53783 * 87.07983 * 89.11286 * 4 2 1 6 6 C 1.52998 * 113.61085 * 139.98387 * 5 4 2 7 7 O 1.42896 * 109.47357 * 176.52910 * 6 5 4 8 8 C 1.42896 * 114.00446 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.46984 * 330.00066 * 8 7 6 10 10 C 1.50703 * 109.47055 * 89.99977 * 8 7 6 11 11 H 1.07998 * 120.00275 * 240.00088 * 10 8 7 12 12 C 1.37874 * 119.99789 * 59.99941 * 10 8 7 13 13 N 1.31518 * 120.00144 * 0.02562 * 12 10 8 14 14 Si 1.86806 * 120.00024 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47037 * 89.99806 * 14 12 10 16 16 H 1.48498 * 109.47434 * 210.00303 * 14 12 10 17 17 H 1.48498 * 109.46918 * 330.00275 * 14 12 10 18 18 C 1.50701 * 109.47417 * 210.00046 * 8 7 6 19 19 C 1.38237 * 119.99605 * 324.72893 * 18 8 7 20 20 C 1.38236 * 119.99544 * 179.81222 * 19 18 8 21 21 C 1.38237 * 120.00196 * 0.39148 * 20 19 18 22 22 C 1.38230 * 119.99861 * 359.86039 * 21 20 19 23 23 C 1.38229 * 120.00169 * 145.00304 * 18 8 7 24 24 C 1.53777 * 87.17202 * 25.39160 * 5 4 2 25 25 H 1.08999 * 109.46575 * 288.80787 * 1 2 3 26 26 H 1.09001 * 109.46803 * 48.80292 * 1 2 3 27 27 H 1.08997 * 109.47447 * 168.80423 * 1 2 3 28 28 H 1.09007 * 109.47035 * 191.20094 * 3 2 1 29 29 H 1.09007 * 109.47439 * 311.19306 * 3 2 1 30 30 H 1.08996 * 109.47451 * 71.19485 * 3 2 1 31 31 H 1.09003 * 113.61065 * 334.56170 * 4 2 1 32 32 H 1.08995 * 113.61641 * 203.66558 * 4 2 1 33 33 H 1.08992 * 113.61608 * 270.79786 * 5 4 2 34 34 H 1.08999 * 109.47594 * 56.52486 * 6 5 4 35 35 H 1.09000 * 109.47045 * 296.52764 * 6 5 4 36 36 H 0.97007 * 119.99867 * 179.97438 * 13 12 10 37 37 H 1.08002 * 120.00277 * 359.97438 * 19 18 8 38 38 H 1.08001 * 119.99795 * 180.23017 * 20 19 18 39 39 H 1.08002 * 120.00265 * 179.83609 * 21 20 19 40 40 H 1.08000 * 120.00485 * 179.97438 * 22 21 20 41 41 H 1.08003 * 119.99905 * 359.97433 * 23 18 8 42 42 H 1.09000 * 113.61586 * 89.15564 * 24 5 4 43 43 H 1.09000 * 113.61322 * 220.05454 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9280 1.0602 5 6 2.0929 -2.0425 0.0019 6 6 3.3263 -2.9478 0.0028 7 8 3.1495 -3.9948 -0.9534 8 6 4.2511 -4.9015 -1.0331 9 1 5.1732 -4.3755 -0.7855 10 6 4.0416 -6.0333 -0.0604 11 1 4.7597 -6.2086 0.7270 12 6 2.9331 -6.8450 -0.1757 13 7 2.0589 -6.6319 -1.1348 14 14 2.6737 -8.2485 1.0296 15 1 1.8894 -7.7629 2.1933 16 1 1.9345 -9.3475 0.3581 17 1 3.9913 -8.7506 1.4956 18 6 4.3477 -5.4530 -2.4323 19 6 3.1979 -5.6968 -3.1599 20 6 3.2866 -6.1990 -4.4448 21 6 4.5248 -6.4650 -4.9990 22 6 5.6743 -6.2261 -4.2694 23 6 5.5857 -5.7203 -2.9859 24 6 2.1448 -0.9317 -1.0602 25 1 -0.3632 0.3313 0.9728 26 1 -0.3633 0.6769 -0.7733 27 1 -0.3634 -1.0081 -0.1995 28 1 3.1943 1.3533 -0.1996 29 1 1.6415 2.0077 -0.7733 30 1 1.9600 1.8734 0.9727 31 1 1.4946 -1.1067 1.9156 32 1 3.1591 -0.6486 1.3496 33 1 1.1575 -2.6019 0.0035 34 1 3.4591 -3.3801 0.9945 35 1 4.2073 -2.3617 -0.2590 36 1 1.2792 -7.2033 -1.2161 37 1 2.2304 -5.4925 -2.7256 38 1 2.3884 -6.3860 -5.0146 39 1 4.5940 -6.8599 -6.0018 40 1 6.6416 -6.4342 -4.7022 41 1 6.4839 -5.5336 -2.4159 42 1 3.1575 -0.6532 -1.3517 43 1 1.4923 -1.1135 -1.9143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224769021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:24 Heat of formation + Delta-G solvation = -21.029142 kcal Electronic energy + Delta-G solvation = -21473.926135 eV Core-core repulsion = 18483.966385 eV Total energy + Delta-G solvation = -2989.959750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.70218 -39.86139 -37.81009 -34.76354 -32.60125 -31.71511 -31.21957 -28.67513 -28.24917 -26.95436 -26.55840 -24.61002 -22.99584 -21.91160 -21.42217 -19.17267 -18.60912 -17.46665 -17.08072 -16.61733 -16.30236 -15.87360 -15.41617 -15.26517 -15.11540 -14.71602 -14.43043 -14.16137 -13.89478 -13.59296 -13.48216 -13.29554 -13.17624 -12.87838 -12.71880 -12.63649 -12.60825 -12.29043 -12.02114 -11.95883 -11.63301 -11.42419 -11.36982 -11.03293 -10.90715 -10.80337 -10.65059 -9.83977 -9.40305 -9.15360 -7.89541 -6.32388 0.82856 1.00596 1.37779 1.39106 1.47524 2.39272 3.06505 3.32246 3.41860 3.61758 3.76876 3.84079 4.07661 4.33148 4.37587 4.39009 4.49431 4.55513 4.62113 4.68863 4.72926 4.81286 4.83579 4.89880 4.93418 4.95836 5.02682 5.06022 5.09946 5.16832 5.22846 5.24136 5.30222 5.36251 5.48029 5.61782 5.62880 5.68138 5.72707 5.89136 6.06596 6.17572 6.38113 6.53999 6.66371 7.14168 7.46605 8.89985 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014897 B = 0.005798 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.134544 B = 4828.345999 C = 5955.189959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.081 4.081 3 C -0.130 4.130 4 C -0.117 4.117 5 C -0.108 4.108 6 C 0.080 3.920 7 O -0.386 6.386 8 C 0.243 3.757 9 H 0.010 0.990 10 C -0.568 4.568 11 H 0.048 0.952 12 C 0.045 3.955 13 N -0.859 5.859 14 Si 0.944 3.056 15 H -0.276 1.276 16 H -0.281 1.281 17 H -0.273 1.273 18 C -0.068 4.068 19 C -0.065 4.065 20 C -0.162 4.162 21 C -0.141 4.141 22 C -0.144 4.144 23 C -0.144 4.144 24 C -0.121 4.121 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.021 0.979 35 H 0.033 0.967 36 H 0.259 0.741 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.113 0.887 42 H 0.077 0.923 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.146 10.643 -1.124 10.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.081 4.081 3 C -0.187 4.187 4 C -0.154 4.154 5 C -0.126 4.126 6 C 0.003 3.997 7 O -0.305 6.305 8 C 0.187 3.813 9 H 0.028 0.972 10 C -0.604 4.604 11 H 0.067 0.933 12 C -0.159 4.159 13 N -0.495 5.495 14 Si 0.770 3.230 15 H -0.202 1.202 16 H -0.206 1.206 17 H -0.198 1.198 18 C -0.069 4.069 19 C -0.084 4.084 20 C -0.180 4.180 21 C -0.159 4.159 22 C -0.162 4.162 23 C -0.163 4.163 24 C -0.158 4.158 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.039 0.961 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.154 0.846 38 H 0.137 0.863 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.131 0.869 42 H 0.096 0.904 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.485 10.560 -1.304 10.651 hybrid contribution 0.069 -1.285 0.981 1.618 sum -0.416 9.274 -0.323 9.289 Atomic orbital electron populations 1.21595 0.92740 1.01525 1.02563 1.21775 0.95929 0.94798 0.95570 1.21694 1.00382 0.94266 1.02374 1.23038 1.01574 0.94508 0.96285 1.22408 0.97234 0.94024 0.98944 1.22265 0.96692 0.88629 0.92140 1.87970 1.43908 1.39612 1.59047 1.18491 0.84845 0.87590 0.90342 0.97171 1.21633 1.08662 1.15880 1.14274 0.93337 1.25587 0.95524 0.98594 0.96231 1.70038 1.11113 1.38044 1.30271 0.85798 0.78148 0.79502 0.79562 1.20185 1.20641 1.19775 1.20128 0.93486 0.98661 0.94606 1.21664 1.00305 0.94560 0.91899 1.21398 0.98075 1.02575 0.95959 1.21239 0.92318 1.01807 1.00498 1.21130 0.99099 1.01684 0.94328 1.21044 0.96505 1.02305 0.96400 1.23103 1.00781 0.95488 0.96456 0.91290 0.91417 0.93815 0.92674 0.91892 0.91533 0.91071 0.89517 0.91049 0.96063 0.94933 0.93117 0.84597 0.86266 0.84380 0.84261 0.86869 0.90412 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.07 71.98 0.65 -2.13 16 2 C -0.08 -1.92 1.39 -51.60 -0.07 -1.99 16 3 C -0.13 -2.46 9.20 71.98 0.66 -1.80 16 4 C -0.12 -3.13 6.79 31.12 0.21 -2.92 16 5 C -0.11 -3.77 3.65 -10.27 -0.04 -3.81 16 6 C 0.08 3.38 5.56 71.98 0.40 3.78 16 7 O -0.39 -19.79 8.53 -148.98 -1.27 -21.06 16 8 C 0.24 12.74 2.59 29.10 0.08 12.81 16 9 H 0.01 0.52 7.70 -2.39 -0.02 0.50 16 10 C -0.57 -31.73 8.89 25.60 0.23 -31.50 16 11 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 12 C 0.04 2.45 5.24 84.65 0.44 2.90 16 13 N -0.86 -47.89 8.50 21.45 0.18 -47.71 16 14 Si 0.94 43.73 29.54 68.60 2.03 45.76 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 17 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 18 C -0.07 -3.42 4.80 -19.87 -0.10 -3.51 16 19 C -0.07 -3.24 7.46 22.27 0.17 -3.08 16 20 C -0.16 -6.80 10.05 22.27 0.22 -6.58 16 21 C -0.14 -5.16 10.05 22.27 0.22 -4.93 16 22 C -0.14 -5.37 10.05 22.27 0.22 -5.14 16 23 C -0.14 -6.28 9.68 22.27 0.22 -6.07 16 24 C -0.12 -3.64 6.76 31.18 0.21 -3.43 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.04 1.10 7.34 -2.39 -0.02 1.08 16 28 H 0.05 1.05 7.96 -2.38 -0.02 1.03 16 29 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.81 8.10 -2.39 -0.02 1.79 16 32 H 0.09 2.18 8.06 -2.39 -0.02 2.16 16 33 H 0.07 2.81 7.66 -2.39 -0.02 2.79 16 34 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.03 1.28 7.82 -2.39 -0.02 1.26 16 36 H 0.26 13.85 8.31 -92.70 -0.77 13.08 16 37 H 0.14 7.49 5.50 -2.91 -0.02 7.48 16 38 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 39 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 40 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 41 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 42 H 0.08 2.30 7.75 -2.39 -0.02 2.28 16 43 H 0.06 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -61.27 344.16 5.62 -55.65 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.95 Total: 24.76 kcal Atomic # 6 Polarization: -61.12 SS G_CDS: 3.73 Total: -57.39 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.18 Total: -47.71 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -1.27 Total: -21.06 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -61.27 5.62 -55.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224769021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.618 kcal (2) G-P(sol) polarization free energy of solvation -61.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds