Wall clock time and date at job start Mon Mar 30 2020 02:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99913 * 2 1 4 4 H 1.09000 * 109.46443 * 244.99924 * 3 2 1 5 5 C 1.52999 * 109.47270 * 125.00166 * 3 2 1 6 6 C 1.52998 * 109.47349 * 174.99882 * 5 3 2 7 7 C 1.52992 * 109.47502 * 179.97438 * 6 5 3 8 8 C 1.52998 * 109.47502 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47349 * 180.02562 * 8 7 6 10 10 O 1.42901 * 109.47116 * 4.99581 * 3 2 1 11 11 C 1.35672 * 117.00327 * 274.94699 * 10 3 2 12 12 C 1.39310 * 119.81657 * 5.72924 * 11 10 3 13 13 C 1.36433 * 120.18395 * 179.75599 * 12 11 10 14 14 C 1.40835 * 119.81298 * 0.51828 * 13 12 11 15 15 C 1.41210 * 120.18152 * 179.71773 * 14 13 12 16 16 H 1.08002 * 120.00284 * 157.89499 * 15 14 13 17 17 C 1.39895 * 120.00247 * 337.89778 * 15 14 13 18 18 N 1.30878 * 119.99418 * 328.03237 * 17 15 14 19 19 Si 1.86797 * 120.00166 * 148.02972 * 17 15 14 20 20 H 1.48504 * 109.46796 * 94.99224 * 19 17 15 21 21 H 1.48503 * 109.47281 * 214.98928 * 19 17 15 22 22 H 1.48496 * 109.47321 * 334.99447 * 19 17 15 23 23 C 1.40832 * 119.63988 * 359.73294 * 14 13 12 24 24 C 1.36442 * 119.81129 * 0.02562 * 23 14 13 25 25 H 1.07997 * 119.99927 * 180.02562 * 1 2 3 26 26 H 1.08005 * 120.00227 * 359.97438 * 1 2 3 27 27 H 1.07995 * 119.99774 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.47086 * 294.99930 * 5 3 2 29 29 H 1.08995 * 109.46889 * 54.99771 * 5 3 2 30 30 H 1.09005 * 109.47066 * 300.00060 * 6 5 3 31 31 H 1.09002 * 109.46731 * 59.99607 * 6 5 3 32 32 H 1.09005 * 109.47223 * 300.00225 * 7 6 5 33 33 H 1.09005 * 109.46779 * 59.99959 * 7 6 5 34 34 H 1.09005 * 109.47066 * 300.00321 * 8 7 6 35 35 H 1.09002 * 109.46731 * 59.99868 * 8 7 6 36 36 H 1.09000 * 109.47190 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.47106 * 299.99918 * 9 8 7 38 38 H 1.09005 * 109.47068 * 59.99875 * 9 8 7 39 39 H 1.08000 * 119.90906 * 0.02562 * 12 11 10 40 40 H 1.08003 * 120.09598 * 180.25196 * 13 12 11 41 41 H 0.97004 * 119.99802 * 179.97438 * 18 17 15 42 42 H 1.08003 * 120.09384 * 179.97438 * 23 14 13 43 43 H 1.08000 * 119.90518 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.6213 1.4025 -0.9314 5 6 3.0351 1.3332 1.1816 6 6 3.8876 2.6016 1.1110 7 6 4.8587 2.6300 2.2928 8 6 5.7116 3.8982 2.2219 9 6 6.6832 3.9262 3.4035 10 8 1.1393 2.3887 0.1173 11 6 0.5710 2.8405 -1.0288 12 6 0.8066 2.1730 -2.2287 13 6 0.2349 2.6178 -3.3848 14 6 -0.5866 3.7616 -3.3648 15 6 -1.1775 4.2322 -4.5579 16 1 -2.0586 4.8553 -4.5149 17 6 -0.6215 3.8915 -5.7956 18 7 0.6707 3.7160 -5.9063 19 14 -1.7235 3.6870 -7.2899 20 1 -1.7602 4.9589 -8.0556 21 1 -1.1893 2.6041 -8.1544 22 1 -3.0969 3.3355 -6.8479 23 6 -0.8154 4.4335 -2.1485 24 6 -0.2401 3.9727 -1.0003 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8499 -0.9353 0.0004 28 1 2.4722 1.3251 2.1151 29 1 3.6827 0.4574 1.1403 30 1 4.4504 2.6097 0.1775 31 1 3.2399 3.4774 1.1522 32 1 4.2955 2.6222 3.2261 33 1 5.5064 1.7542 2.2520 34 1 6.2748 3.9055 1.2886 35 1 5.0642 4.7742 2.2625 36 1 7.2912 4.8295 3.3526 37 1 6.1204 3.9187 4.3368 38 1 7.3305 3.0502 3.3624 39 1 1.4401 1.2984 -2.2430 40 1 0.4152 2.0969 -4.3136 41 1 1.0562 3.4793 -6.7644 42 1 -1.4438 5.3116 -2.1247 43 1 -0.4142 4.4871 -0.0667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225264676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:45 Heat of formation + Delta-G solvation = -29.299244 kcal Electronic energy + Delta-G solvation = -20658.117969 eV Core-core repulsion = 17667.799601 eV Total energy + Delta-G solvation = -2990.318368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.29143 -36.93543 -35.88349 -33.80185 -32.95764 -31.90355 -29.56547 -29.20270 -27.86628 -24.86182 -24.04425 -21.67378 -21.09512 -20.91711 -20.47688 -18.88388 -17.34762 -16.98089 -15.87235 -15.65166 -15.23711 -14.59664 -14.02252 -13.92055 -13.74562 -13.45153 -13.06103 -12.91580 -12.40587 -12.39126 -12.11066 -12.03634 -11.72627 -11.66165 -11.21451 -11.17881 -11.06630 -10.97124 -10.86590 -10.75615 -10.68593 -10.40311 -10.33272 -9.93852 -9.74360 -9.31393 -8.99266 -8.84582 -7.60441 -7.09694 -6.80105 -4.18686 2.62265 2.78974 2.99114 3.07879 3.11103 3.25789 3.93937 4.21510 4.54193 4.69092 4.90735 5.03709 5.17285 5.26195 5.33134 5.48542 5.56772 5.61492 5.69169 5.72132 5.74053 5.83232 5.98679 5.99440 6.06039 6.12928 6.19645 6.23290 6.28632 6.32906 6.42174 6.54510 6.75790 6.94089 6.97315 7.06719 7.12708 7.25939 7.46032 7.59244 7.93321 8.01659 8.17799 8.48111 8.68809 8.89408 9.03333 10.11246 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.021410 B = 0.003768 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.494804 B = 7429.800660 C = 7985.660444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.197 4.197 3 C 0.119 3.881 4 H 0.073 0.927 5 C -0.105 4.105 6 C -0.120 4.120 7 C -0.117 4.117 8 C -0.127 4.127 9 C -0.152 4.152 10 O -0.317 6.317 11 C -0.016 4.016 12 C -0.160 4.160 13 C -0.150 4.150 14 C 0.095 3.905 15 C -0.473 4.473 16 H 0.079 0.921 17 C 0.088 3.912 18 N -0.778 5.778 19 Si 0.893 3.107 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.204 4.204 24 C -0.108 4.108 25 H 0.090 0.910 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.281 0.719 42 H 0.098 0.902 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.998 -4.547 10.558 13.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.215 4.215 3 C 0.061 3.939 4 H 0.091 0.909 5 C -0.142 4.142 6 C -0.158 4.158 7 C -0.155 4.155 8 C -0.165 4.165 9 C -0.209 4.209 10 O -0.233 6.233 11 C -0.059 4.059 12 C -0.179 4.179 13 C -0.169 4.169 14 C 0.092 3.908 15 C -0.502 4.502 16 H 0.097 0.903 17 C -0.132 4.132 18 N -0.401 5.401 19 Si 0.717 3.283 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.182 1.182 23 C -0.223 4.223 24 C -0.127 4.127 25 H 0.108 0.892 26 H 0.130 0.870 27 H 0.126 0.874 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.092 0.908 42 H 0.116 0.884 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.169 -4.508 10.583 13.554 hybrid contribution -0.305 -0.372 -1.098 1.199 sum 6.865 -4.880 9.485 12.685 Atomic orbital electron populations 1.23937 0.96340 1.02229 0.97720 1.23378 0.96859 0.98104 1.03145 1.21083 0.89458 0.84551 0.98768 0.90920 1.21567 0.96352 0.98208 0.98096 1.21587 0.97453 0.98744 0.98015 1.21608 0.97576 0.97543 0.98761 1.21549 0.97957 0.98481 0.98486 1.21778 0.99264 1.01349 0.98519 1.85867 1.57408 1.49115 1.30956 1.18437 1.04026 0.98996 0.84466 1.20561 1.03539 1.00529 0.93227 1.20666 1.02351 0.97863 0.96051 1.17515 0.90609 0.90372 0.92282 1.19391 1.11652 1.29233 0.89883 0.90287 1.25871 0.94474 0.92165 1.00732 1.69955 1.11552 1.31594 1.27044 0.86561 0.82166 0.78874 0.80735 1.19578 1.20028 1.18234 1.20514 1.07340 1.01670 0.92823 1.19611 1.00068 0.95386 0.97587 0.89182 0.86998 0.87394 0.91310 0.91006 0.92168 0.90912 0.92183 0.92418 0.92073 0.91893 0.92984 0.92890 0.92973 0.88741 0.87640 0.90835 0.88421 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 13.35 29.01 0.39 -2.30 16 2 C -0.20 -3.01 8.77 -36.02 -0.32 -3.33 16 3 C 0.12 1.95 2.18 -27.88 -0.06 1.89 16 4 H 0.07 1.27 6.30 -51.93 -0.33 0.94 16 5 C -0.10 -1.38 4.90 -26.73 -0.13 -1.51 16 6 C -0.12 -1.56 5.11 -26.74 -0.14 -1.70 16 7 C -0.12 -1.24 5.21 -26.74 -0.14 -1.38 16 8 C -0.13 -1.29 5.93 -26.73 -0.16 -1.45 16 9 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 10 O -0.32 -6.32 8.36 -18.72 -0.16 -6.47 16 11 C -0.02 -0.37 5.28 -38.78 -0.20 -0.57 16 12 C -0.16 -3.74 8.22 -39.83 -0.33 -4.07 16 13 C -0.15 -3.89 8.74 -39.25 -0.34 -4.23 16 14 C 0.09 2.53 5.57 -106.81 -0.60 1.93 16 15 C -0.47 -12.60 8.94 -37.83 -0.34 -12.94 16 16 H 0.08 2.03 8.01 -52.49 -0.42 1.61 16 17 C 0.09 2.21 4.78 -17.34 -0.08 2.12 16 18 N -0.78 -20.10 11.76 55.55 0.65 -19.45 16 19 Si 0.89 18.52 29.66 -169.99 -5.04 13.48 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 23 C -0.20 -5.05 9.74 -39.25 -0.38 -5.43 16 24 C -0.11 -2.50 9.92 -39.83 -0.40 -2.90 16 25 H 0.09 1.25 8.06 -52.49 -0.42 0.83 16 26 H 0.11 2.12 5.97 -52.48 -0.31 1.80 16 27 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.09 7.82 -51.93 -0.41 0.68 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 2.04 5.65 -52.49 -0.30 1.74 16 40 H 0.11 2.81 6.52 -52.48 -0.34 2.47 16 41 H 0.28 6.56 8.30 -40.82 -0.34 6.23 16 42 H 0.10 2.27 8.06 -52.48 -0.42 1.84 16 43 H 0.09 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -27.24 349.90 -9.29 -36.53 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -7.16 Total: 7.43 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: -2.86 Total: -36.80 kcal Atomic # 7 Polarization: -20.10 SS G_CDS: 0.65 Total: -19.45 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.16 Total: -6.47 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.04 Total: 13.48 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.24 -9.29 -36.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.229 kcal (2) G-P(sol) polarization free energy of solvation -27.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds