Wall clock time and date at job start Mon Mar 30 2020 02:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99913 * 2 1 4 4 H 1.09000 * 109.46443 * 244.99924 * 3 2 1 5 5 C 1.52999 * 109.47270 * 125.00166 * 3 2 1 6 6 C 1.52998 * 109.47349 * 174.99882 * 5 3 2 7 7 C 1.52992 * 109.47502 * 179.97438 * 6 5 3 8 8 C 1.52998 * 109.47502 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47349 * 180.02562 * 8 7 6 10 10 O 1.42901 * 109.47116 * 4.99581 * 3 2 1 11 11 C 1.35672 * 117.00327 * 274.94699 * 10 3 2 12 12 C 1.39310 * 119.81657 * 5.72924 * 11 10 3 13 13 C 1.36433 * 120.18395 * 179.75599 * 12 11 10 14 14 C 1.40835 * 119.81298 * 0.51828 * 13 12 11 15 15 C 1.41210 * 120.18152 * 179.71773 * 14 13 12 16 16 H 1.08002 * 120.00284 * 157.89499 * 15 14 13 17 17 C 1.39895 * 120.00247 * 337.89778 * 15 14 13 18 18 N 1.30878 * 119.99418 * 328.03237 * 17 15 14 19 19 Si 1.86797 * 120.00166 * 148.02972 * 17 15 14 20 20 H 1.48504 * 109.46796 * 94.99224 * 19 17 15 21 21 H 1.48503 * 109.47281 * 214.98928 * 19 17 15 22 22 H 1.48496 * 109.47321 * 334.99447 * 19 17 15 23 23 C 1.40832 * 119.63988 * 359.73294 * 14 13 12 24 24 C 1.36442 * 119.81129 * 0.02562 * 23 14 13 25 25 H 1.07997 * 119.99927 * 180.02562 * 1 2 3 26 26 H 1.08005 * 120.00227 * 359.97438 * 1 2 3 27 27 H 1.07995 * 119.99774 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.47086 * 294.99930 * 5 3 2 29 29 H 1.08995 * 109.46889 * 54.99771 * 5 3 2 30 30 H 1.09005 * 109.47066 * 300.00060 * 6 5 3 31 31 H 1.09002 * 109.46731 * 59.99607 * 6 5 3 32 32 H 1.09005 * 109.47223 * 300.00225 * 7 6 5 33 33 H 1.09005 * 109.46779 * 59.99959 * 7 6 5 34 34 H 1.09005 * 109.47066 * 300.00321 * 8 7 6 35 35 H 1.09002 * 109.46731 * 59.99868 * 8 7 6 36 36 H 1.09000 * 109.47190 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.47106 * 299.99918 * 9 8 7 38 38 H 1.09005 * 109.47068 * 59.99875 * 9 8 7 39 39 H 1.08000 * 119.90906 * 0.02562 * 12 11 10 40 40 H 1.08003 * 120.09598 * 180.25196 * 13 12 11 41 41 H 0.97004 * 119.99802 * 179.97438 * 18 17 15 42 42 H 1.08003 * 120.09384 * 179.97438 * 23 14 13 43 43 H 1.08000 * 119.90518 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.6213 1.4025 -0.9314 5 6 3.0351 1.3332 1.1816 6 6 3.8876 2.6016 1.1110 7 6 4.8587 2.6300 2.2928 8 6 5.7116 3.8982 2.2219 9 6 6.6832 3.9262 3.4035 10 8 1.1393 2.3887 0.1173 11 6 0.5710 2.8405 -1.0288 12 6 0.8066 2.1730 -2.2287 13 6 0.2349 2.6178 -3.3848 14 6 -0.5866 3.7616 -3.3648 15 6 -1.1775 4.2322 -4.5579 16 1 -2.0586 4.8553 -4.5149 17 6 -0.6215 3.8915 -5.7956 18 7 0.6707 3.7160 -5.9063 19 14 -1.7235 3.6870 -7.2899 20 1 -1.7602 4.9589 -8.0556 21 1 -1.1893 2.6041 -8.1544 22 1 -3.0969 3.3355 -6.8479 23 6 -0.8154 4.4335 -2.1485 24 6 -0.2401 3.9727 -1.0003 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8499 -0.9353 0.0004 28 1 2.4722 1.3251 2.1151 29 1 3.6827 0.4574 1.1403 30 1 4.4504 2.6097 0.1775 31 1 3.2399 3.4774 1.1522 32 1 4.2955 2.6222 3.2261 33 1 5.5064 1.7542 2.2520 34 1 6.2748 3.9055 1.2886 35 1 5.0642 4.7742 2.2625 36 1 7.2912 4.8295 3.3526 37 1 6.1204 3.9187 4.3368 38 1 7.3305 3.0502 3.3624 39 1 1.4401 1.2984 -2.2430 40 1 0.4152 2.0969 -4.3136 41 1 1.0562 3.4793 -6.7644 42 1 -1.4438 5.3116 -2.1247 43 1 -0.4142 4.4871 -0.0667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225264676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:43 Heat of formation + Delta-G solvation = -40.170883 kcal Electronic energy + Delta-G solvation = -20658.589399 eV Core-core repulsion = 17667.799601 eV Total energy + Delta-G solvation = -2990.789798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.91321 -38.61022 -36.97308 -35.45676 -34.48507 -32.93973 -31.47451 -31.03349 -28.97684 -26.67738 -25.20791 -23.24047 -22.70808 -22.04321 -21.71202 -20.32871 -19.27180 -18.59473 -17.25038 -17.04929 -16.55692 -16.18435 -15.76054 -15.15865 -14.83711 -14.63075 -14.59485 -14.13467 -14.11084 -13.90863 -13.80536 -13.20807 -13.11189 -12.93371 -12.76923 -12.68251 -12.43934 -12.35220 -12.14756 -11.86854 -11.80173 -11.75786 -11.66640 -11.35263 -11.18231 -11.13706 -10.75593 -10.22248 -9.52801 -8.99694 -8.67573 -6.16480 0.97307 1.04693 1.37427 1.37925 1.46912 1.56951 2.20606 2.63202 2.72112 3.66322 3.71500 4.02419 4.03933 4.13163 4.22093 4.31895 4.34437 4.42288 4.44513 4.47688 4.67339 4.78174 4.84030 4.90075 4.92516 5.01261 5.04814 5.07703 5.11779 5.16109 5.21280 5.27303 5.33769 5.39774 5.47436 5.54123 5.55276 5.67442 5.67544 5.90527 6.00189 6.05379 6.26216 6.56159 6.84128 6.93364 7.14952 8.26369 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.021410 B = 0.003768 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.494804 B = 7429.800660 C = 7985.660444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.189 4.189 3 C 0.106 3.894 4 H 0.063 0.937 5 C -0.097 4.097 6 C -0.119 4.119 7 C -0.110 4.110 8 C -0.130 4.130 9 C -0.149 4.149 10 O -0.321 6.321 11 C 0.001 3.999 12 C -0.159 4.159 13 C -0.170 4.170 14 C 0.063 3.937 15 C -0.511 4.511 16 H 0.076 0.924 17 C 0.049 3.951 18 N -0.811 5.811 19 Si 0.969 3.031 20 H -0.260 1.260 21 H -0.265 1.265 22 H -0.260 1.260 23 C -0.214 4.214 24 C -0.118 4.118 25 H 0.114 0.886 26 H 0.079 0.921 27 H 0.144 0.856 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.290 0.710 42 H 0.105 0.895 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.881 -5.982 11.328 15.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.207 4.207 3 C 0.050 3.950 4 H 0.081 0.919 5 C -0.134 4.134 6 C -0.157 4.157 7 C -0.148 4.148 8 C -0.168 4.168 9 C -0.206 4.206 10 O -0.238 6.238 11 C -0.043 4.043 12 C -0.178 4.178 13 C -0.190 4.190 14 C 0.061 3.939 15 C -0.540 4.540 16 H 0.094 0.906 17 C -0.169 4.169 18 N -0.435 5.435 19 Si 0.789 3.211 20 H -0.185 1.185 21 H -0.189 1.189 22 H -0.184 1.184 23 C -0.234 4.234 24 C -0.136 4.136 25 H 0.132 0.868 26 H 0.098 0.902 27 H 0.161 0.839 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.123 0.877 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.064 -5.940 11.374 15.155 hybrid contribution -0.484 0.059 -1.187 1.283 sum 7.580 -5.881 10.187 13.993 Atomic orbital electron populations 1.23937 0.96855 1.01950 0.99097 1.23584 0.96619 0.98669 1.01817 1.21489 0.89402 0.84147 1.00001 0.91939 1.21587 0.95852 0.99434 0.96495 1.21556 0.97491 0.97671 0.98968 1.21554 0.97237 0.98345 0.97645 1.21566 0.98112 0.97925 0.99184 1.21753 0.99035 1.02031 0.97806 1.85876 1.57905 1.50416 1.29557 1.18484 1.02706 0.98100 0.84985 1.20686 1.03322 1.01022 0.92787 1.20634 1.03680 0.98272 0.96365 1.17843 0.91613 0.91185 0.93237 1.19615 1.12267 1.31002 0.91096 0.90640 1.26688 0.95658 0.91157 1.03347 1.69971 1.13081 1.32071 1.28409 0.85413 0.79631 0.79308 0.76721 1.18484 1.18933 1.18385 1.20701 1.07706 1.02005 0.92958 1.19875 0.99899 0.95872 0.97998 0.86761 0.90224 0.83887 0.90991 0.87906 0.92812 0.93617 0.91728 0.90802 0.92427 0.93032 0.92536 0.92491 0.92110 0.87041 0.89073 0.89916 0.87672 0.86651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.63 13.35 67.78 0.91 -4.72 16 2 C -0.19 -5.31 8.77 25.65 0.22 -5.08 16 3 C 0.11 3.31 2.18 29.85 0.07 3.38 16 4 H 0.06 2.11 6.30 -2.39 -0.02 2.09 16 5 C -0.10 -2.29 4.90 30.59 0.15 -2.14 16 6 C -0.12 -2.94 5.11 30.59 0.16 -2.78 16 7 C -0.11 -2.10 5.21 30.59 0.16 -1.94 16 8 C -0.13 -2.48 5.93 30.59 0.18 -2.30 16 9 C -0.15 -2.27 9.91 71.98 0.71 -1.56 16 10 O -0.32 -12.61 8.36 -89.89 -0.75 -13.37 16 11 C 0.00 0.04 5.28 22.79 0.12 0.16 16 12 C -0.16 -7.55 8.22 22.11 0.18 -7.37 16 13 C -0.17 -9.10 8.74 22.48 0.20 -8.90 16 14 C 0.06 3.51 5.57 -21.28 -0.12 3.39 16 15 C -0.51 -28.15 8.94 23.40 0.21 -27.94 16 16 H 0.08 4.04 8.01 -2.91 -0.02 4.01 16 17 C 0.05 2.51 4.78 85.24 0.41 2.92 16 18 N -0.81 -42.77 11.76 21.82 0.26 -42.51 16 19 Si 0.97 38.35 29.66 68.60 2.03 40.39 16 20 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 21 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 23 C -0.21 -10.90 9.74 22.49 0.22 -10.68 16 24 C -0.12 -5.52 9.92 22.11 0.22 -5.30 16 25 H 0.11 2.93 8.06 -2.91 -0.02 2.91 16 26 H 0.08 3.00 5.97 -2.91 -0.02 2.99 16 27 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.04 1.36 7.82 -2.39 -0.02 1.34 16 32 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.11 4.78 5.65 -2.91 -0.02 4.77 16 40 H 0.09 5.04 6.52 -2.91 -0.02 5.02 16 41 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 42 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 43 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -60.07 349.90 6.48 -53.59 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: 0.95 Total: 32.78 kcal Atomic # 6 Polarization: -74.87 SS G_CDS: 3.99 Total: -70.87 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.26 Total: -42.51 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.75 Total: -13.37 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.39 kcal Total: -60.07 6.48 -53.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.416 kcal (2) G-P(sol) polarization free energy of solvation -60.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds