Wall clock time and date at job start Mon Mar 30 2020 02:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47244 * 2 1 4 4 C 1.53003 * 109.47360 * 240.00145 * 2 1 3 5 5 C 1.53005 * 109.47203 * 179.97438 * 4 2 1 6 6 C 1.52993 * 109.46988 * 59.99824 * 5 4 2 7 7 H 1.08999 * 109.46922 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47196 * 60.00381 * 6 5 4 9 9 C 1.52998 * 109.47591 * 300.00283 * 6 5 4 10 10 H 1.09002 * 109.46542 * 299.99868 * 9 6 5 11 11 O 1.42898 * 109.47406 * 180.02562 * 9 6 5 12 12 C 1.35673 * 117.00251 * 156.27876 * 11 9 6 13 13 C 1.39309 * 119.81784 * 6.16243 * 12 11 9 14 14 C 1.36433 * 120.18740 * 179.97438 * 13 12 11 15 15 C 1.40832 * 119.81294 * 0.02562 * 14 13 12 16 16 C 1.41212 * 120.18024 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00458 * 21.96542 * 16 15 14 18 18 C 1.39897 * 119.99705 * 201.97069 * 16 15 14 19 19 N 1.30878 * 119.99743 * 216.20495 * 18 16 15 20 20 Si 1.86803 * 119.99947 * 36.20519 * 18 16 15 21 21 H 1.48496 * 109.47277 * 266.00388 * 20 18 16 22 22 H 1.48505 * 109.46830 * 146.00503 * 20 18 16 23 23 H 1.48494 * 109.47157 * 26.00695 * 20 18 16 24 24 C 1.40838 * 119.64078 * 0.24493 * 15 14 13 25 25 C 1.36442 * 119.80699 * 359.51546 * 24 15 14 26 26 C 1.52992 * 109.47342 * 59.99797 * 9 6 5 27 27 H 1.09005 * 109.47463 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47370 * 299.99635 * 1 2 3 29 29 H 1.09006 * 109.47397 * 59.99854 * 1 2 3 30 30 H 1.09001 * 109.47001 * 60.00383 * 4 2 1 31 31 H 1.08998 * 109.47264 * 299.99896 * 4 2 1 32 32 H 1.08998 * 109.46959 * 300.00123 * 5 4 2 33 33 H 1.09002 * 109.46818 * 180.02562 * 5 4 2 34 34 H 1.08999 * 109.46833 * 299.99624 * 8 6 5 35 35 H 1.09006 * 109.47503 * 59.99428 * 8 6 5 36 36 H 1.09001 * 109.47679 * 179.97438 * 8 6 5 37 37 H 1.08001 * 119.90803 * 359.97438 * 13 12 11 38 38 H 1.08000 * 120.09881 * 179.97438 * 14 13 12 39 39 H 0.97003 * 120.00491 * 5.10108 * 19 18 16 40 40 H 1.07992 * 120.09763 * 179.73060 * 24 15 14 41 41 H 1.08002 * 119.90257 * 180.20948 * 25 24 15 42 42 H 1.09005 * 109.47463 * 60.00032 * 26 9 6 43 43 H 1.09000 * 109.47394 * 180.02562 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2495 6 6 4.0805 -1.4415 -0.0003 7 1 5.1705 -1.4415 -0.0008 8 6 3.5711 -2.8842 -0.0001 9 6 3.5704 -0.7204 1.2489 10 1 3.9334 0.3074 1.2487 11 8 4.0477 -1.3933 2.4157 12 6 4.1283 -0.6648 3.5574 13 6 3.6337 0.6373 3.5846 14 6 3.7104 1.3765 4.7287 15 6 4.2919 0.8199 5.8843 16 6 4.3758 1.5782 7.0726 17 1 3.7105 2.4148 7.2274 18 6 5.3207 1.2459 8.0492 19 7 5.0244 1.3756 9.3174 20 14 7.0053 0.6170 7.5431 21 1 6.9942 -0.8678 7.5242 22 1 8.0233 1.0920 8.5144 23 1 7.3377 1.1268 6.1887 24 6 4.7947 -0.4952 5.8467 25 6 4.7058 -1.2226 4.6958 26 6 2.0405 -0.7209 1.2493 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6767 -0.2073 -2.1392 31 1 1.6767 -1.7489 -1.2493 32 1 3.9329 0.3072 -1.2497 33 1 3.9334 -1.2341 -2.1398 34 1 2.4811 -2.8846 0.0002 35 1 3.9344 -3.3980 -0.8901 36 1 3.9351 -3.3980 0.8897 37 1 3.1884 1.0628 2.6974 38 1 3.3269 2.3859 4.7481 39 1 4.1268 1.6310 9.5821 40 1 5.2461 -0.9278 6.7273 41 1 5.0877 -2.2324 4.6663 42 1 1.6775 -1.7487 1.2494 43 1 1.6771 -0.2068 2.1390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225265607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:45 Heat of formation + Delta-G solvation = -54.434790 kcal Electronic energy + Delta-G solvation = -21504.117047 eV Core-core repulsion = 18512.708719 eV Total energy + Delta-G solvation = -2991.408327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.02396 -38.05539 -36.15869 -33.63290 -33.22590 -30.47915 -29.68013 -29.18798 -27.96464 -25.36426 -24.43255 -22.65694 -21.68334 -20.69595 -20.32473 -18.71364 -18.00795 -17.14971 -15.87594 -15.09334 -14.80919 -14.44540 -14.37433 -14.10325 -13.85555 -13.39836 -13.11424 -13.01134 -12.70448 -12.59178 -12.34532 -12.05052 -11.88014 -11.83565 -11.53642 -11.32164 -10.96782 -10.95456 -10.82886 -10.61462 -10.52849 -10.38893 -10.11350 -10.04675 -9.95288 -9.66042 -9.27687 -8.80910 -7.83331 -7.42501 -7.15443 -4.34770 2.69626 2.75012 3.24012 3.37304 3.54875 4.00668 4.05374 4.44233 4.61319 4.66816 4.88250 5.06186 5.15031 5.26627 5.35237 5.41521 5.45478 5.51370 5.58122 5.61760 5.71136 5.82337 5.88805 5.93691 5.96640 5.97900 6.03840 6.07999 6.11059 6.12287 6.33434 6.36545 6.41809 6.54981 6.59770 6.76352 6.92865 7.23213 7.39176 7.52061 7.67141 7.84914 7.95587 8.29999 8.51306 8.69690 8.85614 9.91186 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.031045 B = 0.004354 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.712037 B = 6429.171598 C = 6947.385995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.068 0.932 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.085 4.085 7 H 0.074 0.926 8 C -0.144 4.144 9 C 0.099 3.901 10 H 0.062 0.938 11 O -0.319 6.319 12 C -0.021 4.021 13 C -0.150 4.150 14 C -0.197 4.197 15 C 0.079 3.921 16 C -0.532 4.532 17 H 0.076 0.924 18 C 0.057 3.943 19 N -0.797 5.797 20 Si 1.058 2.942 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.266 1.266 24 C -0.221 4.221 25 C -0.092 4.092 26 C -0.141 4.141 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.290 0.710 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.862 -4.061 -17.184 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.086 0.914 4 C -0.154 4.154 5 C -0.150 4.150 6 C -0.104 4.104 7 H 0.092 0.908 8 C -0.202 4.202 9 C 0.042 3.958 10 H 0.080 0.920 11 O -0.235 6.235 12 C -0.064 4.064 13 C -0.168 4.168 14 C -0.217 4.217 15 C 0.076 3.924 16 C -0.559 4.559 17 H 0.094 0.906 18 C -0.166 4.166 19 N -0.417 5.417 20 Si 0.883 3.117 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.190 1.190 24 C -0.240 4.240 25 C -0.110 4.110 26 C -0.178 4.178 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.089 0.911 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.409 -4.658 -16.505 17.318 hybrid contribution -1.772 0.862 -0.456 2.023 sum -4.180 -3.796 -16.962 17.877 Atomic orbital electron populations 1.21810 0.95241 1.01713 1.01540 1.21086 0.95469 0.99578 0.94704 0.91353 1.21661 0.95452 1.00942 0.97331 1.21541 0.95784 1.00539 0.97096 1.21115 1.00459 0.95853 0.92944 0.90794 1.21844 1.01276 0.95459 1.01576 1.22039 0.93043 0.96064 0.84653 0.91994 1.85856 1.82969 1.38690 1.16032 1.18443 1.09131 0.92189 0.86638 1.20561 1.03675 0.94280 0.98323 1.20533 1.09486 0.98761 0.92894 1.17628 0.91111 0.91515 0.92155 1.20411 1.18972 1.14995 1.01538 0.90562 1.27219 1.05408 0.91763 0.92238 1.70574 1.24527 1.28448 1.18171 0.83842 0.73455 0.77544 0.76868 1.19881 1.21178 1.19014 1.20637 1.10649 0.95403 0.97304 1.19690 1.01007 0.98797 0.91546 1.22203 0.96050 1.01618 0.97940 0.92778 0.92578 0.92895 0.92211 0.91523 0.91936 0.91589 0.92309 0.93363 0.91828 0.88258 0.88665 0.89918 0.87516 0.88209 0.91053 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.19 37.15 0.34 -1.11 16 2 C -0.09 -1.00 2.72 -90.62 -0.25 -1.25 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.12 -1.13 4.93 -26.73 -0.13 -1.26 16 5 C -0.11 -1.14 5.45 -26.73 -0.15 -1.28 16 6 C -0.09 -1.07 2.94 -90.62 -0.27 -1.34 16 7 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 8 C -0.14 -1.72 8.35 37.16 0.31 -1.41 16 9 C 0.10 1.53 1.80 -26.74 -0.05 1.49 16 10 H 0.06 1.01 6.41 -51.93 -0.33 0.67 16 11 O -0.32 -6.22 9.12 -18.72 -0.17 -6.39 16 12 C -0.02 -0.47 6.61 -38.78 -0.26 -0.72 16 13 C -0.15 -3.28 8.10 -39.83 -0.32 -3.60 16 14 C -0.20 -4.78 9.74 -39.25 -0.38 -5.16 16 15 C 0.08 2.06 5.20 -106.80 -0.56 1.50 16 16 C -0.53 -14.48 9.27 -37.83 -0.35 -14.83 16 17 H 0.08 2.14 8.06 -52.49 -0.42 1.71 16 18 C 0.06 1.49 5.11 -17.34 -0.09 1.40 16 19 N -0.80 -21.22 13.66 55.55 0.76 -20.46 16 20 Si 1.06 24.11 25.81 -169.99 -4.39 19.73 16 21 H -0.27 -5.95 6.53 56.52 0.37 -5.58 16 22 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 C -0.22 -5.51 7.65 -39.25 -0.30 -5.81 16 25 C -0.09 -2.12 9.92 -39.83 -0.40 -2.52 16 26 C -0.14 -1.96 4.14 -26.73 -0.11 -2.07 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.64 6.43 -51.93 -0.33 0.30 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.67 4.81 -51.93 -0.25 0.42 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.86 7.68 -51.93 -0.40 0.46 16 37 H 0.10 1.91 5.32 -52.49 -0.28 1.63 16 38 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.29 7.51 8.73 -40.82 -0.36 7.16 16 40 H 0.11 2.64 4.99 -52.49 -0.26 2.38 16 41 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 42 H 0.07 1.00 6.43 -51.93 -0.33 0.66 16 43 H 0.07 1.13 6.70 -51.93 -0.35 0.78 16 LS Contribution 325.40 15.07 4.90 4.90 Total: -1.00 -27.29 325.40 -8.64 -35.93 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.80 Total: 4.26 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: -2.95 Total: -37.98 kcal Atomic # 7 Polarization: -21.22 SS G_CDS: 0.76 Total: -20.46 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.17 Total: -6.39 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -4.39 Total: 19.73 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.29 -8.64 -35.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.506 kcal (2) G-P(sol) polarization free energy of solvation -27.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds