Wall clock time and date at job start Mon Mar 30 2020 02:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47244 * 2 1 4 4 C 1.53003 * 109.47360 * 240.00145 * 2 1 3 5 5 C 1.53005 * 109.47203 * 179.97438 * 4 2 1 6 6 C 1.52993 * 109.46988 * 59.99824 * 5 4 2 7 7 H 1.08999 * 109.46922 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47196 * 60.00381 * 6 5 4 9 9 C 1.52998 * 109.47591 * 300.00283 * 6 5 4 10 10 H 1.09002 * 109.46542 * 299.99868 * 9 6 5 11 11 O 1.42898 * 109.47406 * 180.02562 * 9 6 5 12 12 C 1.35673 * 117.00251 * 156.27876 * 11 9 6 13 13 C 1.39309 * 119.81784 * 6.16243 * 12 11 9 14 14 C 1.36433 * 120.18740 * 179.97438 * 13 12 11 15 15 C 1.40832 * 119.81294 * 0.02562 * 14 13 12 16 16 C 1.41212 * 120.18024 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00458 * 21.96542 * 16 15 14 18 18 C 1.39897 * 119.99705 * 201.97069 * 16 15 14 19 19 N 1.30878 * 119.99743 * 216.20495 * 18 16 15 20 20 Si 1.86803 * 119.99947 * 36.20519 * 18 16 15 21 21 H 1.48496 * 109.47277 * 266.00388 * 20 18 16 22 22 H 1.48505 * 109.46830 * 146.00503 * 20 18 16 23 23 H 1.48494 * 109.47157 * 26.00695 * 20 18 16 24 24 C 1.40838 * 119.64078 * 0.24493 * 15 14 13 25 25 C 1.36442 * 119.80699 * 359.51546 * 24 15 14 26 26 C 1.52992 * 109.47342 * 59.99797 * 9 6 5 27 27 H 1.09005 * 109.47463 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47370 * 299.99635 * 1 2 3 29 29 H 1.09006 * 109.47397 * 59.99854 * 1 2 3 30 30 H 1.09001 * 109.47001 * 60.00383 * 4 2 1 31 31 H 1.08998 * 109.47264 * 299.99896 * 4 2 1 32 32 H 1.08998 * 109.46959 * 300.00123 * 5 4 2 33 33 H 1.09002 * 109.46818 * 180.02562 * 5 4 2 34 34 H 1.08999 * 109.46833 * 299.99624 * 8 6 5 35 35 H 1.09006 * 109.47503 * 59.99428 * 8 6 5 36 36 H 1.09001 * 109.47679 * 179.97438 * 8 6 5 37 37 H 1.08001 * 119.90803 * 359.97438 * 13 12 11 38 38 H 1.08000 * 120.09881 * 179.97438 * 14 13 12 39 39 H 0.97003 * 120.00491 * 5.10108 * 19 18 16 40 40 H 1.07992 * 120.09763 * 179.73060 * 24 15 14 41 41 H 1.08002 * 119.90257 * 180.20948 * 25 24 15 42 42 H 1.09005 * 109.47463 * 60.00032 * 26 9 6 43 43 H 1.09000 * 109.47394 * 180.02562 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2495 6 6 4.0805 -1.4415 -0.0003 7 1 5.1705 -1.4415 -0.0008 8 6 3.5711 -2.8842 -0.0001 9 6 3.5704 -0.7204 1.2489 10 1 3.9334 0.3074 1.2487 11 8 4.0477 -1.3933 2.4157 12 6 4.1283 -0.6648 3.5574 13 6 3.6337 0.6373 3.5846 14 6 3.7104 1.3765 4.7287 15 6 4.2919 0.8199 5.8843 16 6 4.3758 1.5782 7.0726 17 1 3.7105 2.4148 7.2274 18 6 5.3207 1.2459 8.0492 19 7 5.0244 1.3756 9.3174 20 14 7.0053 0.6170 7.5431 21 1 6.9942 -0.8678 7.5242 22 1 8.0233 1.0920 8.5144 23 1 7.3377 1.1268 6.1887 24 6 4.7947 -0.4952 5.8467 25 6 4.7058 -1.2226 4.6958 26 6 2.0405 -0.7209 1.2493 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6767 -0.2073 -2.1392 31 1 1.6767 -1.7489 -1.2493 32 1 3.9329 0.3072 -1.2497 33 1 3.9334 -1.2341 -2.1398 34 1 2.4811 -2.8846 0.0002 35 1 3.9344 -3.3980 -0.8901 36 1 3.9351 -3.3980 0.8897 37 1 3.1884 1.0628 2.6974 38 1 3.3269 2.3859 4.7481 39 1 4.1268 1.6310 9.5821 40 1 5.2461 -0.9278 6.7273 41 1 5.0877 -2.2324 4.6663 42 1 1.6775 -1.7487 1.2494 43 1 1.6771 -0.2068 2.1390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225265607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:44 Heat of formation + Delta-G solvation = -67.061238 kcal Electronic energy + Delta-G solvation = -21504.664571 eV Core-core repulsion = 18512.708719 eV Total energy + Delta-G solvation = -2991.955851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.33763 -39.58789 -37.76182 -35.44912 -34.28670 -32.03415 -31.45448 -30.65636 -28.92205 -26.53296 -26.05550 -24.03651 -23.11344 -22.24388 -21.74825 -20.19204 -19.50772 -18.76847 -17.08714 -16.39129 -16.19865 -16.13475 -15.97326 -15.46579 -15.12697 -14.91773 -14.56778 -14.21274 -14.07115 -13.98276 -13.69197 -13.53107 -13.03386 -12.87443 -12.78027 -12.71734 -12.47583 -12.41497 -12.17225 -11.98199 -11.82394 -11.78043 -11.52356 -11.34869 -11.05487 -11.03417 -10.90589 -10.69626 -9.71430 -9.44638 -9.04781 -6.38092 0.79264 0.85102 1.39571 1.55015 1.75755 2.19698 2.49145 2.58863 3.46339 3.68561 3.69063 3.95458 4.08729 4.13445 4.18974 4.24251 4.28683 4.39648 4.47263 4.54523 4.67518 4.72222 4.74846 4.81319 4.89533 4.94119 4.99936 5.04241 5.05133 5.07650 5.18260 5.19974 5.30228 5.35814 5.39972 5.42374 5.45868 5.46717 5.51488 5.64723 5.77267 5.87972 6.04547 6.34973 6.55588 6.77298 7.00807 7.88005 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.031045 B = 0.004354 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.712037 B = 6429.171598 C = 6947.385995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.108 4.108 6 C -0.083 4.083 7 H 0.068 0.932 8 C -0.142 4.142 9 C 0.089 3.911 10 H 0.055 0.945 11 O -0.325 6.325 12 C -0.001 4.001 13 C -0.148 4.148 14 C -0.208 4.208 15 C 0.055 3.945 16 C -0.567 4.567 17 H 0.050 0.950 18 C 0.030 3.970 19 N -0.817 5.817 20 Si 1.088 2.912 21 H -0.256 1.256 22 H -0.269 1.269 23 H -0.269 1.269 24 C -0.226 4.226 25 C -0.105 4.105 26 C -0.135 4.135 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.283 0.717 40 H 0.106 0.894 41 H 0.123 0.877 42 H 0.071 0.929 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.754 -5.354 -20.568 21.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.084 0.916 4 C -0.150 4.150 5 C -0.145 4.145 6 C -0.102 4.102 7 H 0.087 0.913 8 C -0.199 4.199 9 C 0.033 3.967 10 H 0.073 0.927 11 O -0.241 6.241 12 C -0.045 4.045 13 C -0.166 4.166 14 C -0.227 4.227 15 C 0.053 3.947 16 C -0.595 4.595 17 H 0.068 0.932 18 C -0.188 4.188 19 N -0.438 5.438 20 Si 0.908 3.092 21 H -0.182 1.182 22 H -0.194 1.194 23 H -0.194 1.194 24 C -0.245 4.245 25 C -0.124 4.124 26 C -0.173 4.173 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.144 0.856 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.124 0.876 41 H 0.141 0.859 42 H 0.090 0.910 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.318 -5.951 -19.896 20.896 hybrid contribution -1.919 1.208 0.358 2.296 sum -4.237 -4.743 -19.538 20.547 Atomic orbital electron populations 1.21797 0.94288 1.02139 1.01935 1.21083 0.96259 0.99209 0.94005 0.91598 1.21658 0.94993 1.01277 0.97075 1.21549 0.96105 1.00533 0.96334 1.21162 1.00216 0.96347 0.92446 0.91316 1.21823 1.01568 0.94848 1.01637 1.22442 0.94155 0.95954 0.84184 0.92719 1.85878 1.82893 1.39070 1.16249 1.18622 1.06456 0.91962 0.87415 1.20785 1.03130 0.94193 0.98502 1.20719 1.09416 0.99347 0.93217 1.17813 0.92276 0.92194 0.92442 1.20368 1.20314 1.15594 1.03198 0.93209 1.28180 1.07462 0.91405 0.91795 1.70633 1.24278 1.30364 1.18549 0.83466 0.70834 0.78206 0.76706 1.18159 1.19434 1.19368 1.20711 1.10646 0.95058 0.98076 1.19960 1.01265 0.99825 0.91339 1.22148 0.94791 1.01764 0.98614 0.92353 0.93638 0.91114 0.90163 0.90993 0.91814 0.89407 0.91810 0.91131 0.93976 0.85597 0.88336 0.90649 0.87579 0.85945 0.91027 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.19 71.98 0.66 -1.83 16 2 C -0.09 -1.69 2.72 -10.79 -0.03 -1.72 16 3 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.11 -1.73 4.93 30.60 0.15 -1.57 16 5 C -0.11 -1.76 5.45 30.59 0.17 -1.60 16 6 C -0.08 -1.86 2.94 -10.80 -0.03 -1.89 16 7 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 8 C -0.14 -2.95 8.35 71.98 0.60 -2.35 16 9 C 0.09 2.57 1.80 30.59 0.06 2.62 16 10 H 0.05 1.67 6.41 -2.39 -0.02 1.65 16 11 O -0.32 -12.07 9.12 -89.90 -0.82 -12.89 16 12 C 0.00 -0.03 6.61 22.79 0.15 0.12 16 13 C -0.15 -6.34 8.10 22.11 0.18 -6.16 16 14 C -0.21 -10.14 9.74 22.48 0.22 -9.92 16 15 C 0.06 2.94 5.20 -21.28 -0.11 2.83 16 16 C -0.57 -32.18 9.27 23.40 0.22 -31.96 16 17 H 0.05 2.98 8.06 -2.91 -0.02 2.96 16 18 C 0.03 1.62 5.11 85.24 0.44 2.05 16 19 N -0.82 -44.87 13.66 21.82 0.30 -44.58 16 20 Si 1.09 48.71 25.81 68.60 1.77 50.48 16 21 H -0.26 -10.72 6.53 99.48 0.65 -10.07 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 C -0.23 -11.25 7.65 22.49 0.17 -11.08 16 25 C -0.11 -4.75 9.92 22.11 0.22 -4.53 16 26 C -0.14 -3.53 4.14 30.59 0.13 -3.40 16 27 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.06 6.43 -2.39 -0.02 1.05 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.26 4.81 -2.39 -0.01 1.25 16 35 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.04 1.05 7.68 -2.39 -0.02 1.03 16 37 H 0.13 4.67 5.32 -2.91 -0.02 4.65 16 38 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 39 H 0.28 15.40 8.73 -92.71 -0.81 14.59 16 40 H 0.11 5.23 4.99 -2.91 -0.01 5.21 16 41 H 0.12 4.91 8.06 -2.91 -0.02 4.88 16 42 H 0.07 1.85 6.43 -2.38 -0.02 1.84 16 43 H 0.05 1.43 6.70 -2.39 -0.02 1.41 16 Total: -1.00 -59.63 325.40 5.32 -54.31 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.89 Total: 23.07 kcal Atomic # 6 Polarization: -73.58 SS G_CDS: 3.18 Total: -70.39 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.30 Total: -44.58 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.82 Total: -12.89 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 1.77 Total: 50.48 kcal Total: -59.63 5.32 -54.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.754 kcal (2) G-P(sol) polarization free energy of solvation -59.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds