Wall clock time and date at job start Mon Mar 30 2020 02:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47033 * 2 1 4 4 C 1.53005 * 109.47250 * 240.00002 * 2 1 3 5 5 C 1.53000 * 109.46888 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47276 * 60.00240 * 5 4 2 7 7 H 1.09001 * 109.47313 * 59.99708 * 6 5 4 8 8 C 1.52998 * 109.47069 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.46966 * 299.99712 * 6 5 4 10 10 H 1.09000 * 109.46996 * 179.97438 * 9 6 5 11 11 O 1.42895 * 109.46981 * 300.00011 * 9 6 5 12 12 C 1.35679 * 117.00024 * 205.27683 * 11 9 6 13 13 C 1.39308 * 119.81595 * 355.59383 * 12 11 9 14 14 C 1.36439 * 120.18359 * 180.02562 * 13 12 11 15 15 C 1.40828 * 119.81410 * 359.97438 * 14 13 12 16 16 C 1.41218 * 120.18142 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99971 * 215.68433 * 16 15 14 18 18 C 1.39891 * 119.99638 * 35.69320 * 16 15 14 19 19 N 1.30884 * 120.00238 * 23.00319 * 18 16 15 20 20 Si 1.86800 * 119.99631 * 203.00777 * 18 16 15 21 21 H 1.48500 * 109.47175 * 59.99906 * 20 18 16 22 22 H 1.48499 * 109.46903 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46867 * 299.99624 * 20 18 16 24 24 C 1.40840 * 119.64134 * 0.25464 * 15 14 13 25 25 C 1.36438 * 119.80623 * 359.51046 * 24 15 14 26 26 C 1.52999 * 109.47069 * 120.00147 * 2 1 3 27 27 H 1.09001 * 109.47033 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47074 * 300.00140 * 1 2 3 29 29 H 1.09006 * 109.46900 * 60.00215 * 1 2 3 30 30 H 1.08997 * 109.46854 * 59.99803 * 4 2 1 31 31 H 1.09001 * 109.47101 * 299.99957 * 4 2 1 32 32 H 1.09001 * 109.47188 * 299.99871 * 5 4 2 33 33 H 1.09006 * 109.46421 * 179.97438 * 5 4 2 34 34 H 1.09006 * 109.46900 * 179.97438 * 8 6 5 35 35 H 1.08998 * 109.47074 * 299.99712 * 8 6 5 36 36 H 1.09001 * 109.47033 * 59.99853 * 8 6 5 37 37 H 1.08001 * 119.91115 * 359.97438 * 13 12 11 38 38 H 1.08000 * 120.09142 * 179.97438 * 14 13 12 39 39 H 0.96999 * 119.99844 * 7.46305 * 19 18 16 40 40 H 1.07991 * 120.09464 * 179.72628 * 24 15 14 41 41 H 1.08006 * 119.90689 * 180.21296 * 25 24 15 42 42 H 1.09001 * 109.47313 * 60.00024 * 26 2 1 43 43 H 1.09006 * 109.47120 * 299.99551 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0003 7 1 3.7158 -2.4710 0.0001 8 6 5.6095 -1.4445 0.0004 9 6 3.5694 -0.7222 1.2496 10 1 3.9320 -1.2365 2.1396 11 8 4.0463 0.6249 1.2499 12 6 4.1577 1.2386 2.4548 13 6 3.7265 0.5856 3.6073 14 6 3.8345 1.1959 4.8228 15 6 4.3843 2.4895 4.9103 16 6 4.4993 3.1287 6.1642 17 1 4.3533 4.1960 6.2417 18 6 4.8024 2.3794 7.3060 19 7 5.4088 1.2254 7.1895 20 14 4.3415 3.0259 8.9969 21 1 2.8703 3.2135 9.0710 22 1 4.7697 2.0519 10.0328 23 1 5.0189 4.3266 9.2310 24 6 4.8134 3.1447 3.7397 25 6 4.7027 2.5183 2.5326 26 6 2.0400 -0.7213 1.2492 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 1.6767 -0.2074 -2.1392 31 1 1.6767 -1.7489 -1.2493 32 1 3.9337 0.3058 -1.2486 33 1 3.9333 -1.2360 -2.1387 34 1 5.9724 -1.9582 0.8906 35 1 5.9725 -1.9585 -0.8896 36 1 5.9735 -0.4170 0.0004 37 1 3.3047 -0.4063 3.5384 38 1 3.4993 0.6884 5.7152 39 1 5.7446 0.9390 6.3258 40 1 5.2320 4.1384 3.7978 41 1 5.0344 3.0179 1.6343 42 1 1.6766 -1.7490 1.2492 43 1 1.6767 -0.2074 2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225265612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:48 Heat of formation + Delta-G solvation = -71.313886 kcal Electronic energy + Delta-G solvation = -21649.518831 eV Core-core repulsion = 18657.378571 eV Total energy + Delta-G solvation = -2992.140260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.35952 -39.46241 -37.51537 -35.28740 -34.57276 -31.95254 -31.20239 -30.48265 -29.40515 -26.64866 -25.20529 -24.00602 -23.16851 -22.66312 -21.43495 -20.47409 -19.76980 -18.38253 -16.78461 -16.45534 -16.37136 -16.02038 -15.66293 -15.14271 -15.12055 -14.92427 -14.44356 -14.26349 -14.22414 -14.01158 -13.78738 -13.26114 -13.08032 -12.89632 -12.84743 -12.69403 -12.54206 -12.43825 -12.20885 -11.96884 -11.75273 -11.65470 -11.51580 -11.38084 -11.24151 -10.91935 -10.81922 -10.74738 -9.77367 -9.17988 -8.84825 -6.34403 0.80050 0.88194 1.51280 1.62478 1.80000 2.37896 2.58932 2.71281 3.46505 3.65487 3.76794 3.79867 4.05319 4.10859 4.14098 4.22093 4.32174 4.48520 4.50901 4.57470 4.65190 4.70506 4.77698 4.80092 4.85844 4.89548 4.97806 5.01021 5.03851 5.05796 5.09400 5.24629 5.30265 5.33652 5.40110 5.41976 5.46365 5.48696 5.62433 5.77051 5.78579 5.83117 6.17346 6.27448 6.65624 6.92555 7.02996 8.16255 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.027415 B = 0.004353 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.107171 B = 6431.148531 C = 6741.621092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.047 0.953 4 C -0.106 4.106 5 C -0.109 4.109 6 C -0.079 4.079 7 H 0.103 0.897 8 C -0.145 4.145 9 C 0.085 3.915 10 H 0.052 0.948 11 O -0.312 6.312 12 C 0.022 3.978 13 C -0.166 4.166 14 C -0.183 4.183 15 C 0.045 3.955 16 C -0.576 4.576 17 H 0.067 0.933 18 C 0.004 3.996 19 N -0.838 5.838 20 Si 1.115 2.885 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.260 1.260 24 C -0.194 4.194 25 C -0.120 4.120 26 C -0.135 4.135 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.120 0.880 38 H 0.085 0.915 39 H 0.275 0.725 40 H 0.107 0.893 41 H 0.122 0.878 42 H 0.090 0.910 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.797 -6.755 -13.964 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 H 0.066 0.934 4 C -0.143 4.143 5 C -0.146 4.146 6 C -0.097 4.097 7 H 0.121 0.879 8 C -0.202 4.202 9 C 0.029 3.971 10 H 0.070 0.930 11 O -0.227 6.227 12 C -0.023 4.023 13 C -0.184 4.184 14 C -0.203 4.203 15 C 0.043 3.957 16 C -0.606 4.606 17 H 0.085 0.915 18 C -0.209 4.209 19 N -0.463 5.463 20 Si 0.933 3.067 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.184 1.184 24 C -0.214 4.214 25 C -0.139 4.139 26 C -0.173 4.173 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.138 0.862 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.140 0.860 42 H 0.109 0.891 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.736 -7.116 -12.566 15.538 hybrid contribution 0.183 0.497 -1.070 1.194 sum -5.553 -6.619 -13.636 16.143 Atomic orbital electron populations 1.21799 0.94387 1.02326 1.01486 1.20981 0.95851 0.98999 0.94655 0.93398 1.21560 0.94972 1.01033 0.96755 1.21511 0.95838 1.00366 0.96882 1.21265 0.96032 0.99309 0.93133 0.87921 1.21770 0.94984 1.01526 1.01965 1.22482 0.94099 0.81435 0.99106 0.93023 1.85894 1.82545 1.27898 1.26364 1.18657 1.05309 0.94025 0.84282 1.20763 1.05082 1.00018 0.92580 1.20720 1.05501 0.98057 0.96015 1.17949 0.91194 0.92645 0.93958 1.20504 1.48837 0.97234 0.94027 0.91459 1.28251 0.91207 0.92906 1.08566 1.70587 1.25860 1.20351 1.29503 0.83036 0.77867 0.76432 0.69404 1.19047 1.19785 1.18399 1.20901 1.06730 1.01145 0.92584 1.19973 1.02741 0.93565 0.97577 1.22110 0.94678 1.01972 0.98543 0.91456 0.94068 0.91777 0.91095 0.90524 0.93267 0.90088 0.93575 0.90514 0.93951 0.86244 0.89679 0.91374 0.87441 0.86002 0.89133 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.19 71.98 0.66 -2.26 16 2 C -0.09 -2.08 2.58 -10.79 -0.03 -2.11 16 3 H 0.05 1.44 7.68 -2.39 -0.02 1.42 16 4 C -0.11 -2.00 5.20 30.60 0.16 -1.84 16 5 C -0.11 -2.25 5.06 30.59 0.15 -2.10 16 6 C -0.08 -1.80 2.55 -10.79 -0.03 -1.83 16 7 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 8 C -0.15 -3.44 9.05 71.98 0.65 -2.78 16 9 C 0.09 2.54 1.85 30.58 0.06 2.60 16 10 H 0.05 1.68 6.21 -2.39 -0.01 1.66 16 11 O -0.31 -11.60 7.76 -89.97 -0.70 -12.30 16 12 C 0.02 0.95 6.63 22.79 0.15 1.10 16 13 C -0.17 -7.65 8.19 22.11 0.18 -7.47 16 14 C -0.18 -9.71 8.06 22.48 0.18 -9.52 16 15 C 0.04 2.47 5.05 -21.28 -0.11 2.36 16 16 C -0.58 -32.35 8.94 23.40 0.21 -32.14 16 17 H 0.07 3.70 7.94 -2.91 -0.02 3.67 16 18 C 0.00 0.19 4.94 85.23 0.42 0.61 16 19 N -0.84 -47.45 12.65 21.82 0.28 -47.18 16 20 Si 1.11 45.23 29.99 68.60 2.06 47.29 16 21 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 23 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 24 C -0.19 -9.77 9.75 22.49 0.22 -9.55 16 25 C -0.12 -5.46 9.92 22.11 0.22 -5.24 16 26 C -0.14 -3.64 4.56 30.58 0.14 -3.50 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.25 7.68 -2.39 -0.02 1.24 16 33 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.04 1.19 7.68 -2.39 -0.02 1.17 16 37 H 0.12 4.91 5.44 -2.91 -0.02 4.90 16 38 H 0.08 4.72 7.18 -2.91 -0.02 4.69 16 39 H 0.28 16.26 7.03 -92.71 -0.65 15.61 16 40 H 0.11 5.12 8.06 -2.92 -0.02 5.09 16 41 H 0.12 4.90 8.06 -2.91 -0.02 4.87 16 42 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.04 1.43 7.01 -2.38 -0.02 1.41 16 Total: -1.00 -61.53 334.65 5.96 -55.57 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 1.08 Total: 30.29 kcal Atomic # 6 Polarization: -76.91 SS G_CDS: 3.24 Total: -73.67 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.28 Total: -47.18 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.70 Total: -12.30 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.06 Total: 47.29 kcal Total: -61.53 5.96 -55.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.742 kcal (2) G-P(sol) polarization free energy of solvation -61.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds