Wall clock time and date at job start Mon Mar 30 2020 02:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50700 * 109.46770 * 2 1 4 4 C 1.31006 * 119.99772 * 120.78236 * 3 2 1 5 5 C 1.50690 * 120.00061 * 4.66152 * 4 3 2 6 6 C 1.50696 * 119.99750 * 184.66257 * 4 3 2 7 7 H 1.09000 * 109.47478 * 5.00082 * 6 4 3 8 8 C 1.53003 * 109.47117 * 245.00117 * 6 4 3 9 9 C 1.53002 * 109.47094 * 175.00131 * 8 6 4 10 10 O 1.42902 * 109.47228 * 125.00060 * 6 4 3 11 11 C 1.35676 * 117.00101 * 215.82762 * 10 6 4 12 12 C 1.39305 * 119.81789 * 181.06761 * 11 10 6 13 13 C 1.36446 * 120.18728 * 179.75863 * 12 11 10 14 14 C 1.40836 * 119.80456 * 0.51538 * 13 12 11 15 15 C 1.41221 * 120.17391 * 179.71718 * 14 13 12 16 16 H 1.08000 * 119.99581 * 205.44421 * 15 14 13 17 17 C 1.39886 * 119.99813 * 25.44646 * 15 14 13 18 18 N 1.30879 * 120.00177 * 16.49791 * 17 15 14 19 19 Si 1.86803 * 119.99860 * 196.49319 * 17 15 14 20 20 H 1.48501 * 109.46947 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47255 * 120.00022 * 19 17 15 22 22 H 1.48499 * 109.47035 * 240.00308 * 19 17 15 23 23 C 1.40829 * 119.64574 * 359.73639 * 14 13 12 24 24 C 1.36437 * 119.81191 * 0.02562 * 23 14 13 25 25 H 1.08995 * 109.46983 * 60.00266 * 1 2 3 26 26 H 1.08997 * 109.46538 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47010 * 299.99678 * 1 2 3 28 28 H 1.09001 * 109.47010 * 240.00321 * 2 1 3 29 29 H 1.08995 * 109.46983 * 119.99734 * 2 1 3 30 30 H 1.07999 * 120.00371 * 300.78174 * 3 2 1 31 31 H 1.09003 * 109.47617 * 55.36805 * 5 4 3 32 32 H 1.08999 * 109.47706 * 295.36774 * 5 4 3 33 33 H 1.08997 * 109.47279 * 175.36698 * 5 4 3 34 34 H 1.09001 * 109.46657 * 295.00037 * 8 6 4 35 35 H 1.09000 * 109.47162 * 55.00052 * 8 6 4 36 36 H 1.09000 * 109.47181 * 59.99933 * 9 8 6 37 37 H 1.09003 * 109.46546 * 179.97438 * 9 8 6 38 38 H 1.08996 * 109.46835 * 299.99516 * 9 8 6 39 39 H 1.08000 * 119.90926 * 0.02562 * 12 11 10 40 40 H 1.07995 * 120.09743 * 180.25358 * 13 12 11 41 41 H 0.97008 * 119.99726 * 179.97438 * 18 17 15 42 42 H 1.07993 * 120.09507 * 180.02562 * 23 14 13 43 43 H 1.08001 * 119.90921 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.7981 1.8449 0.9747 5 6 3.2628 0.8854 2.0397 6 6 3.2142 3.2922 1.0309 7 1 2.7141 3.8452 0.2357 8 6 4.7298 3.3946 0.8480 9 6 5.1369 4.8679 0.7802 10 8 2.8489 3.8441 2.2974 11 6 2.4390 5.1374 2.3106 12 6 2.0903 5.7412 3.5166 13 6 1.6818 7.0429 3.5392 14 6 1.6028 7.7728 2.3373 15 6 1.1753 9.1187 2.3510 16 1 0.7254 9.5512 1.4696 17 6 1.3347 9.8914 3.5061 18 7 2.1511 9.4969 4.4499 19 14 0.3823 11.4865 3.7015 20 1 -0.4668 11.7060 2.5031 21 1 -0.4782 11.4045 4.9090 22 1 1.3344 12.6167 3.8479 23 6 1.9521 7.1532 1.1219 24 6 2.3633 5.8523 1.1172 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7611 2.0895 -0.8035 31 1 3.7705 0.0417 1.5723 32 1 2.4029 0.5245 2.6040 33 1 3.9511 1.3958 2.7133 34 1 5.2304 2.9176 1.6906 35 1 5.0188 2.8948 -0.0766 36 1 4.8479 5.3676 1.7047 37 1 6.2167 4.9407 0.6503 38 1 4.6363 5.3447 -0.0625 39 1 2.1476 5.1788 4.4368 40 1 1.4157 7.5108 4.4755 41 1 2.2618 10.0330 5.2508 42 1 1.8947 7.7062 0.1960 43 1 2.6312 5.3755 0.1859 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225265784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:51 Heat of formation + Delta-G solvation = -22.817890 kcal Electronic energy + Delta-G solvation = -21049.622220 eV Core-core repulsion = 18059.584905 eV Total energy + Delta-G solvation = -2990.037316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.41331 -37.22895 -35.92876 -33.52286 -32.94732 -31.32886 -29.63296 -29.01411 -27.21607 -26.21445 -24.59477 -22.70863 -21.99233 -20.71947 -19.85034 -17.98659 -17.33662 -16.96814 -15.75655 -15.18346 -14.89767 -14.40400 -14.16623 -13.97558 -13.83635 -13.14152 -13.02999 -12.87068 -12.37025 -12.22036 -12.20500 -12.10866 -11.87350 -11.67573 -11.54448 -11.48792 -11.16014 -11.09248 -10.90814 -10.79396 -10.61035 -10.58475 -10.25894 -9.76648 -9.73004 -9.21081 -8.99897 -8.68656 -7.59547 -6.94025 -6.67474 -4.21953 2.15792 2.80434 2.98844 3.10671 3.15829 3.23180 3.97960 4.22997 4.65369 4.84410 4.97226 5.12094 5.24726 5.27464 5.32746 5.41734 5.58330 5.70185 5.70684 5.75822 5.77055 5.82712 5.90377 6.06810 6.09468 6.12461 6.14251 6.20062 6.22292 6.26524 6.42483 6.71103 6.74758 6.77573 6.97560 7.02973 7.15994 7.24115 7.52051 7.60091 7.83796 8.04453 8.24539 8.51587 8.70629 8.94074 9.03142 10.26536 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.026888 B = 0.003908 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.114631 B = 7163.885973 C = 7531.313748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.161 4.161 4 C -0.114 4.114 5 C -0.111 4.111 6 C 0.120 3.880 7 H 0.077 0.923 8 C -0.134 4.134 9 C -0.155 4.155 10 O -0.314 6.314 11 C 0.001 3.999 12 C -0.124 4.124 13 C -0.132 4.132 14 C 0.086 3.914 15 C -0.464 4.464 16 H 0.075 0.925 17 C 0.074 3.926 18 N -0.802 5.802 19 Si 0.906 3.094 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.276 1.276 23 C -0.195 4.195 24 C -0.169 4.169 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.278 0.722 42 H 0.093 0.907 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.370 -13.104 -5.573 14.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.180 4.180 4 C -0.115 4.115 5 C -0.167 4.167 6 C 0.063 3.937 7 H 0.094 0.906 8 C -0.171 4.171 9 C -0.212 4.212 10 O -0.230 6.230 11 C -0.043 4.043 12 C -0.143 4.143 13 C -0.151 4.151 14 C 0.084 3.916 15 C -0.495 4.495 16 H 0.093 0.907 17 C -0.142 4.142 18 N -0.428 5.428 19 Si 0.731 3.269 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.201 1.201 23 C -0.215 4.215 24 C -0.188 4.188 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.142 0.858 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.482 -13.142 -5.182 14.204 hybrid contribution -0.280 0.970 -0.139 1.019 sum 1.202 -12.172 -5.321 13.339 Atomic orbital electron populations 1.21687 0.95136 1.01281 1.02290 1.20640 0.96051 0.94303 1.02249 1.22648 0.98546 0.97641 0.99127 1.21564 0.98309 0.94878 0.96714 1.20719 1.01226 0.97426 0.97368 1.21155 0.94572 0.90230 0.87725 0.90571 1.21951 0.95626 0.97932 1.01629 1.21901 1.00138 0.95743 1.03432 1.85906 1.82135 1.25473 1.29497 1.18570 1.08109 0.83249 0.94337 1.19830 1.04765 0.95540 0.94130 1.20968 1.03107 0.91516 0.99501 1.17584 0.90096 0.93154 0.90742 1.19480 1.35921 0.95685 0.98367 0.90650 1.25850 0.93534 0.99642 0.95142 1.69838 1.27658 1.37940 1.07397 0.86306 0.80215 0.81152 0.79276 1.18542 1.19808 1.20126 1.20568 1.08442 0.94762 0.97729 1.20450 1.06909 0.96122 0.95278 0.92704 0.92795 0.92422 0.91637 0.91097 0.87452 0.92124 0.91650 0.91562 0.91455 0.91741 0.91053 0.93404 0.92678 0.88658 0.85755 0.91091 0.88903 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.90 37.16 0.37 -1.06 16 2 C -0.10 -0.97 6.17 -27.88 -0.17 -1.14 16 3 C -0.16 -2.03 9.11 -36.03 -0.33 -2.36 16 4 C -0.11 -1.61 5.09 -101.07 -0.51 -2.12 16 5 C -0.11 -1.37 8.21 36.00 0.30 -1.07 16 6 C 0.12 1.98 2.28 -27.88 -0.06 1.91 16 7 H 0.08 1.30 4.95 -51.93 -0.26 1.04 16 8 C -0.13 -1.97 5.47 -26.73 -0.15 -2.11 16 9 C -0.15 -2.50 8.48 37.16 0.32 -2.18 16 10 O -0.31 -6.39 9.47 -18.73 -0.18 -6.56 16 11 C 0.00 0.01 5.41 -38.78 -0.21 -0.20 16 12 C -0.12 -3.00 9.92 -39.83 -0.40 -3.40 16 13 C -0.13 -3.44 8.63 -39.25 -0.34 -3.78 16 14 C 0.09 2.31 5.57 -106.80 -0.59 1.72 16 15 C -0.46 -12.41 9.04 -37.83 -0.34 -12.75 16 16 H 0.08 1.95 7.90 -52.49 -0.41 1.53 16 17 C 0.07 1.89 5.16 -17.34 -0.09 1.80 16 18 N -0.80 -20.91 10.93 55.54 0.61 -20.31 16 19 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 20 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 23 C -0.20 -4.78 9.74 -39.25 -0.38 -5.17 16 24 C -0.17 -3.77 7.21 -39.83 -0.29 -4.06 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.69 5.80 -51.93 -0.30 0.39 16 30 H 0.11 1.33 7.86 -52.49 -0.41 0.92 16 31 H 0.06 0.62 7.74 -51.93 -0.40 0.22 16 32 H 0.06 0.79 7.77 -51.93 -0.40 0.38 16 33 H 0.07 0.87 7.40 -51.93 -0.38 0.49 16 34 H 0.07 0.98 7.54 -51.93 -0.39 0.59 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.38 6.39 -51.93 -0.33 1.05 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.88 6.87 -51.93 -0.36 0.53 16 39 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.12 3.35 6.17 -52.49 -0.32 3.03 16 41 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 42 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 43 H 0.10 1.93 4.55 -52.49 -0.24 1.69 16 LS Contribution 340.91 15.07 5.14 5.14 Total: -1.00 -27.54 340.91 -9.08 -36.62 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.73 Total: 7.24 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: -2.89 Total: -35.98 kcal Atomic # 7 Polarization: -20.91 SS G_CDS: 0.61 Total: -20.31 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.18 Total: -6.56 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.54 -9.08 -36.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.803 kcal (2) G-P(sol) polarization free energy of solvation -27.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds