Wall clock time and date at job start Mon Mar 30 2020 02:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50700 * 109.46770 * 2 1 4 4 C 1.31006 * 119.99772 * 120.78236 * 3 2 1 5 5 C 1.50690 * 120.00061 * 4.66152 * 4 3 2 6 6 C 1.50696 * 119.99750 * 184.66257 * 4 3 2 7 7 H 1.09000 * 109.47478 * 5.00082 * 6 4 3 8 8 C 1.53003 * 109.47117 * 245.00117 * 6 4 3 9 9 C 1.53002 * 109.47094 * 175.00131 * 8 6 4 10 10 O 1.42902 * 109.47228 * 125.00060 * 6 4 3 11 11 C 1.35676 * 117.00101 * 215.82762 * 10 6 4 12 12 C 1.39305 * 119.81789 * 181.06761 * 11 10 6 13 13 C 1.36446 * 120.18728 * 179.75863 * 12 11 10 14 14 C 1.40836 * 119.80456 * 0.51538 * 13 12 11 15 15 C 1.41221 * 120.17391 * 179.71718 * 14 13 12 16 16 H 1.08000 * 119.99581 * 205.44421 * 15 14 13 17 17 C 1.39886 * 119.99813 * 25.44646 * 15 14 13 18 18 N 1.30879 * 120.00177 * 16.49791 * 17 15 14 19 19 Si 1.86803 * 119.99860 * 196.49319 * 17 15 14 20 20 H 1.48501 * 109.46947 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47255 * 120.00022 * 19 17 15 22 22 H 1.48499 * 109.47035 * 240.00308 * 19 17 15 23 23 C 1.40829 * 119.64574 * 359.73639 * 14 13 12 24 24 C 1.36437 * 119.81191 * 0.02562 * 23 14 13 25 25 H 1.08995 * 109.46983 * 60.00266 * 1 2 3 26 26 H 1.08997 * 109.46538 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47010 * 299.99678 * 1 2 3 28 28 H 1.09001 * 109.47010 * 240.00321 * 2 1 3 29 29 H 1.08995 * 109.46983 * 119.99734 * 2 1 3 30 30 H 1.07999 * 120.00371 * 300.78174 * 3 2 1 31 31 H 1.09003 * 109.47617 * 55.36805 * 5 4 3 32 32 H 1.08999 * 109.47706 * 295.36774 * 5 4 3 33 33 H 1.08997 * 109.47279 * 175.36698 * 5 4 3 34 34 H 1.09001 * 109.46657 * 295.00037 * 8 6 4 35 35 H 1.09000 * 109.47162 * 55.00052 * 8 6 4 36 36 H 1.09000 * 109.47181 * 59.99933 * 9 8 6 37 37 H 1.09003 * 109.46546 * 179.97438 * 9 8 6 38 38 H 1.08996 * 109.46835 * 299.99516 * 9 8 6 39 39 H 1.08000 * 119.90926 * 0.02562 * 12 11 10 40 40 H 1.07995 * 120.09743 * 180.25358 * 13 12 11 41 41 H 0.97008 * 119.99726 * 179.97438 * 18 17 15 42 42 H 1.07993 * 120.09507 * 180.02562 * 23 14 13 43 43 H 1.08001 * 119.90921 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.7981 1.8449 0.9747 5 6 3.2628 0.8854 2.0397 6 6 3.2142 3.2922 1.0309 7 1 2.7141 3.8452 0.2357 8 6 4.7298 3.3946 0.8480 9 6 5.1369 4.8679 0.7802 10 8 2.8489 3.8441 2.2974 11 6 2.4390 5.1374 2.3106 12 6 2.0903 5.7412 3.5166 13 6 1.6818 7.0429 3.5392 14 6 1.6028 7.7728 2.3373 15 6 1.1753 9.1187 2.3510 16 1 0.7254 9.5512 1.4696 17 6 1.3347 9.8914 3.5061 18 7 2.1511 9.4969 4.4499 19 14 0.3823 11.4865 3.7015 20 1 -0.4668 11.7060 2.5031 21 1 -0.4782 11.4045 4.9090 22 1 1.3344 12.6167 3.8479 23 6 1.9521 7.1532 1.1219 24 6 2.3633 5.8523 1.1172 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7611 2.0895 -0.8035 31 1 3.7705 0.0417 1.5723 32 1 2.4029 0.5245 2.6040 33 1 3.9511 1.3958 2.7133 34 1 5.2304 2.9176 1.6906 35 1 5.0188 2.8948 -0.0766 36 1 4.8479 5.3676 1.7047 37 1 6.2167 4.9407 0.6503 38 1 4.6363 5.3447 -0.0625 39 1 2.1476 5.1788 4.4368 40 1 1.4157 7.5108 4.4755 41 1 2.2618 10.0330 5.2508 42 1 1.8947 7.7062 0.1960 43 1 2.6312 5.3755 0.1859 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225265784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:51 Heat of formation + Delta-G solvation = -34.398544 kcal Electronic energy + Delta-G solvation = -21050.124395 eV Core-core repulsion = 18059.584905 eV Total energy + Delta-G solvation = -2990.539490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.99460 -38.78244 -37.28288 -35.23279 -34.37750 -32.33326 -31.52760 -30.88222 -28.26130 -27.52418 -26.34511 -23.75738 -23.54637 -22.57713 -21.33106 -19.42285 -18.82525 -18.66808 -17.09106 -16.87325 -16.29431 -15.97706 -15.67768 -15.13886 -14.99255 -14.57477 -14.49681 -14.10030 -14.03230 -13.73452 -13.72556 -13.37862 -13.07977 -13.01993 -12.81690 -12.77774 -12.61204 -12.47170 -12.41078 -12.35238 -12.00019 -11.75492 -11.62597 -11.52054 -11.24884 -10.95802 -10.82822 -9.71238 -9.52787 -8.83773 -8.56263 -6.20945 0.96783 1.04684 1.11314 1.39636 1.51342 1.54678 2.23584 2.73142 2.80936 3.68937 3.73350 3.85738 4.07081 4.16525 4.29120 4.31884 4.36702 4.38767 4.45726 4.52173 4.65036 4.80279 4.83394 4.88215 4.92084 4.93571 5.00403 5.06449 5.08842 5.13472 5.19428 5.24313 5.26315 5.32950 5.38562 5.42035 5.61272 5.67106 5.72313 5.91936 5.97166 6.07782 6.29009 6.60012 6.85353 6.97406 7.13979 8.39683 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.026888 B = 0.003908 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.114631 B = 7163.885973 C = 7531.313748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.139 4.139 5 C -0.106 4.106 6 C 0.113 3.887 7 H 0.070 0.930 8 C -0.127 4.127 9 C -0.153 4.153 10 O -0.323 6.323 11 C 0.016 3.984 12 C -0.139 4.139 13 C -0.149 4.149 14 C 0.054 3.946 15 C -0.501 4.501 16 H 0.074 0.926 17 C 0.033 3.967 18 N -0.834 5.834 19 Si 0.981 3.019 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.267 1.267 23 C -0.205 4.205 24 C -0.163 4.163 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.032 0.968 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.286 0.714 42 H 0.102 0.898 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.479 -14.612 -6.900 16.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.166 4.166 4 C -0.139 4.139 5 C -0.163 4.163 6 C 0.057 3.943 7 H 0.088 0.912 8 C -0.164 4.164 9 C -0.211 4.211 10 O -0.239 6.239 11 C -0.028 4.028 12 C -0.158 4.158 13 C -0.169 4.169 14 C 0.052 3.948 15 C -0.531 4.531 16 H 0.092 0.908 17 C -0.180 4.180 18 N -0.462 5.462 19 Si 0.802 3.198 20 H -0.182 1.182 21 H -0.190 1.190 22 H -0.192 1.192 23 C -0.224 4.224 24 C -0.181 4.181 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.096 0.904 42 H 0.120 0.880 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.601 -14.676 -6.519 16.139 hybrid contribution -0.252 1.250 0.179 1.288 sum 1.349 -13.426 -6.341 14.909 Atomic orbital electron populations 1.21691 0.94867 1.02319 1.01545 1.20704 0.96156 0.92796 1.03520 1.22916 0.96575 0.98967 0.98128 1.21518 1.00318 0.93663 0.98374 1.20703 1.01092 0.97682 0.96797 1.21461 0.95744 0.91566 0.85551 0.91245 1.21927 0.94264 0.97077 1.03178 1.21861 1.01557 0.96411 1.01223 1.85901 1.81803 1.23890 1.32302 1.18591 1.06112 0.84293 0.93836 1.19988 1.05086 0.95239 0.95449 1.20872 1.04687 0.92395 0.98939 1.17912 0.91332 0.93857 0.91691 1.19717 1.37633 0.96313 0.99414 0.90811 1.26701 0.93896 1.03112 0.94308 1.69897 1.28629 1.39610 1.08033 0.85177 0.78699 0.76603 0.79305 1.18237 1.19021 1.19197 1.20790 1.08399 0.95766 0.97482 1.20667 1.05678 0.95339 0.96416 0.92600 0.90944 0.94030 0.89675 0.90477 0.87496 0.89729 0.91633 0.92896 0.91204 0.88858 0.94865 0.91352 0.92844 0.87664 0.87377 0.90364 0.87959 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.90 71.99 0.71 -1.79 16 2 C -0.09 -1.63 6.17 29.85 0.18 -1.44 16 3 C -0.15 -3.33 9.11 25.64 0.23 -3.09 16 4 C -0.14 -3.60 5.09 -16.50 -0.08 -3.68 16 5 C -0.11 -2.39 8.21 71.23 0.58 -1.81 16 6 C 0.11 3.54 2.28 29.85 0.07 3.61 16 7 H 0.07 2.25 4.95 -2.39 -0.01 2.24 16 8 C -0.13 -3.47 5.47 30.60 0.17 -3.31 16 9 C -0.15 -4.75 8.48 71.98 0.61 -4.14 16 10 O -0.32 -12.98 9.47 -89.93 -0.85 -13.83 16 11 C 0.02 0.72 5.41 22.79 0.12 0.84 16 12 C -0.14 -6.93 9.92 22.11 0.22 -6.71 16 13 C -0.15 -8.17 8.63 22.49 0.19 -7.97 16 14 C 0.05 3.00 5.57 -21.28 -0.12 2.88 16 15 C -0.50 -27.64 9.04 23.40 0.21 -27.43 16 16 H 0.07 3.93 7.90 -2.91 -0.02 3.91 16 17 C 0.03 1.71 5.16 85.23 0.44 2.15 16 18 N -0.83 -44.85 10.93 21.82 0.24 -44.61 16 19 Si 0.98 39.19 29.59 68.60 2.03 41.22 16 20 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 21 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 22 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 23 C -0.20 -10.21 9.74 22.48 0.22 -9.99 16 24 C -0.16 -7.25 7.21 22.11 0.16 -7.09 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.25 5.80 -2.39 -0.01 1.24 16 30 H 0.11 2.39 7.86 -2.91 -0.02 2.37 16 31 H 0.08 1.46 7.74 -2.39 -0.02 1.44 16 32 H 0.06 1.45 7.77 -2.39 -0.02 1.43 16 33 H 0.05 1.32 7.40 -2.39 -0.02 1.30 16 34 H 0.07 1.89 7.54 -2.39 -0.02 1.87 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.03 1.27 6.39 -2.39 -0.02 1.25 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.05 1.64 6.87 -2.39 -0.02 1.62 16 39 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 40 H 0.11 6.15 6.17 -2.91 -0.02 6.13 16 41 H 0.29 13.89 8.30 -92.70 -0.77 13.12 16 42 H 0.10 4.78 8.06 -2.91 -0.02 4.75 16 43 H 0.13 4.82 4.55 -2.91 -0.01 4.81 16 Total: -1.00 -60.89 340.91 6.32 -54.57 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.98 Total: 31.62 kcal Atomic # 6 Polarization: -72.90 SS G_CDS: 3.93 Total: -68.97 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.24 Total: -44.61 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.85 Total: -13.83 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -60.89 6.32 -54.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.172 kcal (2) G-P(sol) polarization free energy of solvation -60.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds