Wall clock time and date at job start Mon Mar 30 2020 02:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47115 * 2 1 4 4 C 1.53007 * 109.46854 * 240.00291 * 2 1 3 5 5 C 1.52994 * 109.47162 * 179.97438 * 4 2 1 6 6 C 1.53008 * 109.46987 * 60.00284 * 5 4 2 7 7 C 1.52997 * 109.46826 * 299.99834 * 6 5 4 8 8 H 1.08997 * 109.47599 * 299.99897 * 7 6 5 9 9 C 1.53000 * 109.47050 * 179.97438 * 7 6 5 10 10 C 1.52994 * 109.47540 * 120.00516 * 2 1 3 11 11 H 1.08996 * 109.47338 * 59.99620 * 10 2 1 12 12 O 1.42898 * 109.47153 * 299.99984 * 10 2 1 13 13 C 1.35674 * 117.00419 * 99.73813 * 12 10 2 14 14 C 1.39309 * 119.81645 * 354.45353 * 13 12 10 15 15 C 1.36436 * 120.18569 * 179.97438 * 14 13 12 16 16 C 1.40829 * 119.81197 * 0.02562 * 15 14 13 17 17 C 1.41218 * 120.18230 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99273 * 24.00861 * 17 16 15 19 19 C 1.39885 * 120.00390 * 204.00895 * 17 16 15 20 20 N 1.30878 * 120.00023 * 17.71881 * 19 17 16 21 21 Si 1.86807 * 119.99928 * 197.72371 * 19 17 16 22 22 H 1.48501 * 109.46789 * 59.99966 * 21 19 17 23 23 H 1.48496 * 109.46946 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46763 * 299.99797 * 21 19 17 25 25 C 1.40832 * 119.64079 * 359.97438 * 16 15 14 26 26 C 1.36434 * 119.81480 * 359.97438 * 25 16 15 27 27 H 1.09003 * 109.46821 * 299.99531 * 1 2 3 28 28 H 1.08992 * 109.47757 * 59.99725 * 1 2 3 29 29 H 1.09004 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47026 * 60.00057 * 4 2 1 31 31 H 1.08996 * 109.47022 * 299.99766 * 4 2 1 32 32 H 1.09006 * 109.47455 * 300.00572 * 5 4 2 33 33 H 1.08997 * 109.47449 * 179.97438 * 5 4 2 34 34 H 1.08998 * 109.47212 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.47307 * 59.99731 * 6 5 4 36 36 H 1.08996 * 109.47204 * 299.99972 * 9 7 6 37 37 H 1.08998 * 109.47090 * 60.00452 * 9 7 6 38 38 H 1.09003 * 109.47324 * 180.02562 * 9 7 6 39 39 H 1.08006 * 119.90433 * 359.69149 * 14 13 12 40 40 H 1.07996 * 120.09490 * 179.97438 * 15 14 13 41 41 H 0.97004 * 120.00049 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.09510 * 180.02562 * 25 16 15 43 43 H 1.07999 * 119.90842 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5699 -0.7207 -1.2497 6 6 4.0804 -1.4418 -0.0005 7 6 3.5705 -0.7206 1.2487 8 1 3.9335 0.3072 1.2486 9 6 4.0805 -1.4419 2.4979 10 6 2.0401 -0.7213 1.2491 11 1 1.6767 -1.7489 1.2491 12 8 1.5638 -0.0478 2.4159 13 6 0.4821 -0.5817 3.0370 14 6 -0.1793 -1.6665 2.4657 15 6 -1.2675 -2.2096 3.0841 16 6 -1.7220 -1.6701 4.3029 17 6 -2.8479 -2.2257 4.9494 18 1 -3.1284 -3.2512 4.7589 19 6 -3.5998 -1.4481 5.8364 20 7 -3.4934 -0.1438 5.8151 21 14 -4.7556 -2.2713 7.0513 22 1 -3.9800 -3.1767 7.9367 23 1 -5.4302 -1.2345 7.8730 24 1 -5.7748 -3.0569 6.3103 25 6 -1.0476 -0.5733 4.8737 26 6 0.0396 -0.0426 4.2431 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6766 -0.2073 -2.1393 31 1 1.6766 -1.7489 -1.2494 32 1 3.9329 0.3071 -1.2498 33 1 3.9332 -1.2349 -2.1395 34 1 5.1704 -1.4410 -0.0005 35 1 3.7174 -2.4695 -0.0003 36 1 3.7171 -2.4695 2.4979 37 1 5.1705 -1.4419 2.4979 38 1 3.7168 -0.9284 3.3880 39 1 0.1676 -2.0759 1.5284 40 1 -1.7794 -3.0503 2.6397 41 1 -4.0151 0.3955 6.4299 42 1 -1.3896 -0.1540 5.8084 43 1 0.5582 0.7981 4.6796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225266251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:06 Heat of formation + Delta-G solvation = -48.641294 kcal Electronic energy + Delta-G solvation = -21710.777183 eV Core-core repulsion = 18719.620080 eV Total energy + Delta-G solvation = -2991.157102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.92600 -37.67281 -35.86119 -33.43404 -33.20183 -31.06248 -29.52303 -29.01762 -26.27685 -26.12173 -24.58880 -22.32479 -20.99646 -20.55378 -20.35025 -19.42877 -17.28805 -17.01963 -15.25761 -15.15820 -15.08044 -14.38397 -14.15960 -13.94806 -13.79786 -13.24145 -12.80869 -12.59485 -12.32926 -12.15835 -12.12638 -11.99072 -11.91126 -11.63586 -11.52997 -11.14999 -11.09672 -10.87189 -10.77320 -10.72258 -10.59629 -10.37018 -10.17550 -10.04580 -9.74013 -9.53490 -9.19267 -8.91686 -7.57834 -6.94368 -6.67745 -4.20614 2.83174 3.00619 3.09653 3.12256 3.25963 3.97646 4.12378 4.65010 4.72116 4.79608 4.92940 5.16886 5.22776 5.42448 5.44860 5.53623 5.54076 5.71553 5.73546 5.82573 5.90370 5.96460 5.98833 6.04614 6.09430 6.14927 6.21183 6.25375 6.32195 6.34286 6.38131 6.52146 6.56517 6.74106 6.83482 7.03847 7.16988 7.25839 7.54370 7.61342 7.86428 8.05031 8.26016 8.53755 8.72453 8.94572 9.04953 10.26003 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.034926 B = 0.004178 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.508944 B = 6699.548712 C = 6942.014644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 H 0.071 0.929 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.112 4.112 7 C -0.090 4.090 8 H 0.073 0.927 9 C -0.144 4.144 10 C 0.096 3.904 11 H 0.073 0.927 12 O -0.318 6.318 13 C 0.000 4.000 14 C -0.168 4.168 15 C -0.198 4.198 16 C 0.087 3.913 17 C -0.465 4.465 18 H 0.074 0.926 19 C 0.076 3.924 20 N -0.800 5.800 21 Si 0.906 3.094 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.267 1.267 25 C -0.134 4.134 26 C -0.124 4.124 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.279 0.721 42 H 0.125 0.875 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.405 -0.629 -9.141 13.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.149 4.149 7 C -0.108 4.108 8 H 0.091 0.909 9 C -0.202 4.202 10 C 0.039 3.961 11 H 0.090 0.910 12 O -0.234 6.234 13 C -0.043 4.043 14 C -0.186 4.186 15 C -0.217 4.217 16 C 0.085 3.915 17 C -0.495 4.495 18 H 0.093 0.907 19 C -0.141 4.141 20 N -0.427 5.427 21 Si 0.731 3.269 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.154 4.154 26 C -0.143 4.143 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.143 0.857 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.394 -0.248 -8.971 13.733 hybrid contribution -0.763 -0.436 0.379 0.957 sum 9.632 -0.683 -8.592 12.925 Atomic orbital electron populations 1.21928 0.94428 1.02222 1.01993 1.21554 0.96566 1.00075 0.94221 0.91033 1.21587 0.95184 1.00770 0.97487 1.21566 0.95912 1.00739 0.97598 1.21580 1.00121 0.99421 0.93789 1.21247 0.94312 1.00284 0.94992 0.90852 1.21754 0.99818 1.00426 0.98168 1.22236 0.92648 0.96723 0.84493 0.90971 1.85862 1.44903 1.52357 1.40283 1.18556 0.91595 0.98334 0.95789 1.20474 0.99228 0.98828 1.00103 1.20554 1.00075 1.03904 0.97215 1.17566 0.92114 0.91718 0.90143 1.19421 1.09391 0.98903 1.21794 0.90737 1.25850 0.97013 0.94474 0.96747 1.69827 1.35469 1.05248 1.32106 0.86410 0.80152 0.79812 0.80559 1.18938 1.20423 1.19148 1.20979 0.94389 0.99393 1.00623 1.19838 0.99109 1.01128 0.94221 0.91246 0.93521 0.92511 0.91916 0.91995 0.91986 0.92144 0.91769 0.91909 0.92983 0.93200 0.91600 0.88378 0.88999 0.90965 0.85743 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 7.77 37.16 0.29 -2.08 16 2 C -0.11 -1.51 2.46 -90.62 -0.22 -1.74 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.11 -1.30 5.20 -26.73 -0.14 -1.44 16 5 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 6 C -0.11 -1.20 5.20 -26.73 -0.14 -1.34 16 7 C -0.09 -1.20 2.46 -90.60 -0.22 -1.42 16 8 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 9 C -0.14 -1.95 9.05 37.16 0.34 -1.61 16 10 C 0.10 1.54 1.47 -26.71 -0.04 1.50 16 11 H 0.07 1.22 5.38 -51.93 -0.28 0.94 16 12 O -0.32 -6.36 8.77 -18.72 -0.16 -6.53 16 13 C 0.00 0.01 5.56 -38.78 -0.22 -0.20 16 14 C -0.17 -3.73 7.33 -39.83 -0.29 -4.02 16 15 C -0.20 -4.84 9.74 -39.25 -0.38 -5.23 16 16 C 0.09 2.32 5.58 -106.80 -0.60 1.73 16 17 C -0.46 -12.43 9.04 -37.83 -0.34 -12.77 16 18 H 0.07 1.92 7.91 -52.48 -0.41 1.50 16 19 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 20 N -0.80 -20.88 10.91 55.54 0.61 -20.27 16 21 Si 0.91 18.86 29.60 -169.99 -5.03 13.83 16 22 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 25 C -0.13 -3.52 8.65 -39.25 -0.34 -3.86 16 26 C -0.12 -3.00 9.92 -39.83 -0.40 -3.39 16 27 H 0.07 1.32 6.66 -51.93 -0.35 0.98 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.92 6.52 -51.93 -0.34 0.58 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 1.02 7.68 -51.93 -0.40 0.62 16 39 H 0.10 1.94 4.41 -52.48 -0.23 1.71 16 40 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 41 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 42 H 0.12 3.35 6.11 -52.49 -0.32 3.03 16 43 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -27.10 329.75 -9.53 -36.63 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.96 Total: 6.79 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: -2.95 Total: -35.42 kcal Atomic # 7 Polarization: -20.88 SS G_CDS: 0.61 Total: -20.27 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.16 Total: -6.53 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.10 -9.53 -36.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225266251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.013 kcal (2) G-P(sol) polarization free energy of solvation -27.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds