Wall clock time and date at job start Mon Mar 30 2020 02:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47115 * 2 1 4 4 C 1.53007 * 109.46854 * 240.00291 * 2 1 3 5 5 C 1.52994 * 109.47162 * 179.97438 * 4 2 1 6 6 C 1.53008 * 109.46987 * 60.00284 * 5 4 2 7 7 C 1.52997 * 109.46826 * 299.99834 * 6 5 4 8 8 H 1.08997 * 109.47599 * 299.99897 * 7 6 5 9 9 C 1.53000 * 109.47050 * 179.97438 * 7 6 5 10 10 C 1.52994 * 109.47540 * 120.00516 * 2 1 3 11 11 H 1.08996 * 109.47338 * 59.99620 * 10 2 1 12 12 O 1.42898 * 109.47153 * 299.99984 * 10 2 1 13 13 C 1.35674 * 117.00419 * 99.73813 * 12 10 2 14 14 C 1.39309 * 119.81645 * 354.45353 * 13 12 10 15 15 C 1.36436 * 120.18569 * 179.97438 * 14 13 12 16 16 C 1.40829 * 119.81197 * 0.02562 * 15 14 13 17 17 C 1.41218 * 120.18230 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99273 * 24.00861 * 17 16 15 19 19 C 1.39885 * 120.00390 * 204.00895 * 17 16 15 20 20 N 1.30878 * 120.00023 * 17.71881 * 19 17 16 21 21 Si 1.86807 * 119.99928 * 197.72371 * 19 17 16 22 22 H 1.48501 * 109.46789 * 59.99966 * 21 19 17 23 23 H 1.48496 * 109.46946 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46763 * 299.99797 * 21 19 17 25 25 C 1.40832 * 119.64079 * 359.97438 * 16 15 14 26 26 C 1.36434 * 119.81480 * 359.97438 * 25 16 15 27 27 H 1.09003 * 109.46821 * 299.99531 * 1 2 3 28 28 H 1.08992 * 109.47757 * 59.99725 * 1 2 3 29 29 H 1.09004 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47026 * 60.00057 * 4 2 1 31 31 H 1.08996 * 109.47022 * 299.99766 * 4 2 1 32 32 H 1.09006 * 109.47455 * 300.00572 * 5 4 2 33 33 H 1.08997 * 109.47449 * 179.97438 * 5 4 2 34 34 H 1.08998 * 109.47212 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.47307 * 59.99731 * 6 5 4 36 36 H 1.08996 * 109.47204 * 299.99972 * 9 7 6 37 37 H 1.08998 * 109.47090 * 60.00452 * 9 7 6 38 38 H 1.09003 * 109.47324 * 180.02562 * 9 7 6 39 39 H 1.08006 * 119.90433 * 359.69149 * 14 13 12 40 40 H 1.07996 * 120.09490 * 179.97438 * 15 14 13 41 41 H 0.97004 * 120.00049 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.09510 * 180.02562 * 25 16 15 43 43 H 1.07999 * 119.90842 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5699 -0.7207 -1.2497 6 6 4.0804 -1.4418 -0.0005 7 6 3.5705 -0.7206 1.2487 8 1 3.9335 0.3072 1.2486 9 6 4.0805 -1.4419 2.4979 10 6 2.0401 -0.7213 1.2491 11 1 1.6767 -1.7489 1.2491 12 8 1.5638 -0.0478 2.4159 13 6 0.4821 -0.5817 3.0370 14 6 -0.1793 -1.6665 2.4657 15 6 -1.2675 -2.2096 3.0841 16 6 -1.7220 -1.6701 4.3029 17 6 -2.8479 -2.2257 4.9494 18 1 -3.1284 -3.2512 4.7589 19 6 -3.5998 -1.4481 5.8364 20 7 -3.4934 -0.1438 5.8151 21 14 -4.7556 -2.2713 7.0513 22 1 -3.9800 -3.1767 7.9367 23 1 -5.4302 -1.2345 7.8730 24 1 -5.7748 -3.0569 6.3103 25 6 -1.0476 -0.5733 4.8737 26 6 0.0396 -0.0426 4.2431 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6766 -0.2073 -2.1393 31 1 1.6766 -1.7489 -1.2494 32 1 3.9329 0.3071 -1.2498 33 1 3.9332 -1.2349 -2.1395 34 1 5.1704 -1.4410 -0.0005 35 1 3.7174 -2.4695 -0.0003 36 1 3.7171 -2.4695 2.4979 37 1 5.1705 -1.4419 2.4979 38 1 3.7168 -0.9284 3.3880 39 1 0.1676 -2.0759 1.5284 40 1 -1.7794 -3.0503 2.6397 41 1 -4.0151 0.3955 6.4299 42 1 -1.3896 -0.1540 5.8084 43 1 0.5582 0.7981 4.6796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225266251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:05 Heat of formation + Delta-G solvation = -60.206965 kcal Electronic energy + Delta-G solvation = -21711.278708 eV Core-core repulsion = 18719.620080 eV Total energy + Delta-G solvation = -2991.658628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.33597 -39.24918 -37.45273 -35.16004 -34.46371 -32.28896 -31.29221 -30.90542 -27.68611 -27.12698 -26.38267 -23.76668 -22.65476 -21.97532 -21.56534 -20.70711 -19.16569 -18.67529 -17.02750 -16.57853 -16.41811 -15.83618 -15.47530 -15.22936 -15.12972 -14.70369 -14.34364 -14.04313 -13.92169 -13.65993 -13.58556 -13.29347 -13.28909 -12.98254 -12.78497 -12.74727 -12.62126 -12.43525 -12.27269 -11.92485 -11.72968 -11.70007 -11.62811 -11.41313 -11.16388 -10.98307 -10.90630 -10.60847 -9.51940 -8.84374 -8.56864 -6.19940 0.98845 1.06072 1.39149 1.50235 1.55218 2.23148 2.67494 2.74845 3.63221 3.70854 3.80333 3.90083 4.10640 4.17879 4.24745 4.36415 4.39994 4.43147 4.48396 4.55320 4.68077 4.78024 4.86674 4.87993 4.90027 4.97797 5.01847 5.07767 5.17456 5.22789 5.24610 5.27089 5.30659 5.33233 5.35482 5.42042 5.44165 5.56827 5.64345 5.71337 5.94020 6.07909 6.29879 6.60659 6.87102 6.97364 7.16488 8.38600 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.034926 B = 0.004178 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.508944 B = 6699.548712 C = 6942.014644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 H 0.070 0.930 4 C -0.109 4.109 5 C -0.117 4.117 6 C -0.107 4.107 7 C -0.086 4.086 8 H 0.073 0.927 9 C -0.144 4.144 10 C 0.087 3.913 11 H 0.064 0.936 12 O -0.327 6.327 13 C 0.017 3.983 14 C -0.161 4.161 15 C -0.207 4.207 16 C 0.054 3.946 17 C -0.502 4.502 18 H 0.074 0.926 19 C 0.034 3.966 20 N -0.833 5.833 21 Si 0.981 3.019 22 H -0.261 1.261 23 H -0.269 1.269 24 H -0.260 1.260 25 C -0.153 4.153 26 C -0.140 4.140 27 H 0.030 0.970 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.126 0.874 40 H 0.101 0.899 41 H 0.286 0.714 42 H 0.109 0.891 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.728 -1.280 -10.890 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 H 0.089 0.911 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.145 4.145 7 C -0.105 4.105 8 H 0.092 0.908 9 C -0.201 4.201 10 C 0.031 3.969 11 H 0.082 0.918 12 O -0.243 6.243 13 C -0.027 4.027 14 C -0.180 4.180 15 C -0.227 4.227 16 C 0.052 3.948 17 C -0.532 4.532 18 H 0.092 0.908 19 C -0.179 4.179 20 N -0.460 5.460 21 Si 0.802 3.198 22 H -0.186 1.186 23 H -0.193 1.193 24 H -0.184 1.184 25 C -0.172 4.172 26 C -0.158 4.158 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.143 0.857 40 H 0.119 0.881 41 H 0.097 0.903 42 H 0.127 0.873 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.739 -0.896 -10.742 15.937 hybrid contribution -1.040 -0.172 0.796 1.321 sum 10.698 -1.068 -9.946 14.646 Atomic orbital electron populations 1.21884 0.95844 1.01522 1.01100 1.21543 0.95259 1.00315 0.94904 0.91131 1.21577 0.96457 1.00458 0.96115 1.21569 0.94497 1.01322 0.98081 1.21583 1.01372 0.99043 0.92453 1.21283 0.91955 1.00817 0.96454 0.90809 1.21748 1.01468 0.99743 0.97137 1.22631 0.94672 0.96022 0.83601 0.91825 1.85859 1.43694 1.52951 1.41809 1.18563 0.91684 0.97430 0.94987 1.20678 0.98260 0.98306 1.00734 1.20776 1.00818 1.04272 0.96845 1.17898 0.92954 0.92584 0.91351 1.19677 1.10405 0.99269 1.23836 0.90773 1.26706 0.98434 0.94873 0.97911 1.69891 1.36554 1.06608 1.32931 0.85280 0.77867 0.78808 0.77892 1.18594 1.19319 1.18410 1.20890 0.95498 1.00189 1.00652 1.19998 0.98991 1.01656 0.95198 0.95062 0.91473 0.93050 0.90402 0.91912 0.91489 0.89840 0.89648 0.91801 0.93360 0.90645 0.94354 0.85694 0.88074 0.90319 0.87342 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 7.77 71.98 0.56 -3.97 16 2 C -0.10 -2.72 2.46 -10.79 -0.03 -2.75 16 3 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 4 C -0.11 -2.13 5.20 30.59 0.16 -1.97 16 5 C -0.12 -1.88 5.92 30.60 0.18 -1.70 16 6 C -0.11 -1.91 5.20 30.60 0.16 -1.75 16 7 C -0.09 -2.12 2.46 -10.78 -0.03 -2.14 16 8 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 9 C -0.14 -3.66 9.05 71.98 0.65 -3.01 16 10 C 0.09 2.67 1.47 30.61 0.04 2.72 16 11 H 0.06 2.07 5.38 -2.39 -0.01 2.05 16 12 O -0.33 -13.07 8.77 -89.92 -0.79 -13.86 16 13 C 0.02 0.79 5.56 22.79 0.13 0.92 16 14 C -0.16 -7.22 7.33 22.11 0.16 -7.05 16 15 C -0.21 -10.40 9.74 22.48 0.22 -10.18 16 16 C 0.05 3.01 5.58 -21.28 -0.12 2.89 16 17 C -0.50 -27.77 9.04 23.40 0.21 -27.55 16 18 H 0.07 3.94 7.91 -2.91 -0.02 3.91 16 19 C 0.03 1.78 5.14 85.23 0.44 2.22 16 20 N -0.83 -44.88 10.91 21.82 0.24 -44.64 16 21 Si 0.98 39.17 29.60 68.60 2.03 41.20 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 23 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 24 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 25 C -0.15 -8.39 8.65 22.48 0.19 -8.19 16 26 C -0.14 -6.99 9.92 22.11 0.22 -6.77 16 27 H 0.03 1.18 6.66 -2.39 -0.02 1.17 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.61 6.52 -2.38 -0.02 1.60 16 30 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 36 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.04 1.17 7.68 -2.39 -0.02 1.15 16 39 H 0.13 4.84 4.41 -2.91 -0.01 4.83 16 40 H 0.10 4.75 8.06 -2.91 -0.02 4.73 16 41 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 42 H 0.11 6.20 6.11 -2.91 -0.02 6.18 16 43 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -60.70 329.75 5.61 -55.09 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.97 Total: 30.50 kcal Atomic # 6 Polarization: -71.45 SS G_CDS: 3.16 Total: -68.30 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.24 Total: -44.64 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.79 Total: -13.86 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -60.70 5.61 -55.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225266251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.114 kcal (2) G-P(sol) polarization free energy of solvation -60.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds