Wall clock time and date at job start Mon Mar 30 2020 02:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47303 * 2 1 4 4 C 1.53001 * 109.47135 * 239.99881 * 2 1 3 5 5 C 1.52999 * 109.47135 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.47412 * 60.00113 * 5 4 2 7 7 C 1.53003 * 109.47245 * 300.00047 * 6 5 4 8 8 H 1.08998 * 109.46936 * 299.99667 * 7 6 5 9 9 O 1.42902 * 109.47070 * 179.97438 * 7 6 5 10 10 C 1.35673 * 116.99452 * 84.60184 * 9 7 6 11 11 C 1.39308 * 119.82065 * 354.94841 * 10 9 7 12 12 C 1.36439 * 120.18492 * 180.02562 * 11 10 9 13 13 C 1.40832 * 119.81144 * 359.97438 * 12 11 10 14 14 C 1.41220 * 120.17872 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99967 * 334.07163 * 14 13 12 16 16 C 1.39890 * 120.00006 * 154.07164 * 14 13 12 17 17 N 1.30878 * 119.99970 * 345.41957 * 16 14 13 18 18 Si 1.86805 * 120.00115 * 165.41458 * 16 14 13 19 19 H 1.48496 * 109.47028 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.46808 * 300.00311 * 18 16 14 21 21 H 1.48498 * 109.46534 * 59.99888 * 18 16 14 22 22 C 1.40828 * 119.64327 * 0.25404 * 13 12 11 23 23 C 1.36434 * 119.81186 * 359.48258 * 22 13 12 24 24 C 1.52999 * 109.46954 * 59.99672 * 7 6 5 25 25 H 1.08998 * 109.47303 * 60.00220 * 24 7 6 26 26 C 1.53001 * 109.47135 * 180.02562 * 24 7 6 27 27 H 1.09002 * 109.46607 * 299.99673 * 1 2 3 28 28 H 1.08994 * 109.47158 * 60.00009 * 1 2 3 29 29 H 1.09002 * 109.47010 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47122 * 300.00230 * 4 2 1 31 31 H 1.09003 * 109.46934 * 60.00020 * 4 2 1 32 32 H 1.09001 * 109.47321 * 180.02562 * 5 4 2 33 33 H 1.08998 * 109.47303 * 300.00119 * 5 4 2 34 34 H 1.09000 * 109.47699 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47359 * 59.99814 * 6 5 4 36 36 H 1.07994 * 119.90835 * 0.02562 * 11 10 9 37 37 H 1.08007 * 120.09527 * 179.97438 * 12 11 10 38 38 H 0.97004 * 120.00221 * 180.02562 * 17 16 14 39 39 H 1.07997 * 120.09988 * 179.74682 * 22 13 12 40 40 H 1.08004 * 119.91633 * 180.25642 * 23 22 13 41 41 H 1.08998 * 109.47122 * 59.99770 * 26 24 7 42 42 H 1.09005 * 109.47352 * 180.02562 * 26 24 7 43 43 H 1.09003 * 109.46934 * 299.99980 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5695 -0.7222 1.2496 8 1 3.9333 0.3053 1.2498 9 8 4.0450 -1.3966 2.4163 10 6 5.2866 -1.0688 2.8540 11 6 6.0741 -0.1921 2.1111 12 6 7.3241 0.1421 2.5440 13 6 7.8173 -0.4014 3.7460 14 6 9.1101 -0.0611 4.2011 15 1 9.8676 0.2461 3.4952 16 6 9.4097 -0.1221 5.5662 17 7 8.4437 -0.2118 6.4447 18 14 11.1883 -0.0756 6.1352 19 1 11.2361 -0.1545 7.6173 20 1 11.9239 -1.2276 5.5547 21 1 11.8187 1.1916 5.6857 22 6 7.0167 -1.2907 4.4886 23 6 5.7669 -1.6104 4.0444 24 6 2.0396 -0.7216 1.2492 25 1 1.6758 -1.7491 1.2490 26 6 1.5295 0.0001 2.4982 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6766 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.9334 -1.2353 -2.1391 33 1 3.9337 0.3057 -1.2487 34 1 5.1695 -1.4442 0.0003 35 1 3.7158 -2.4710 0.0001 36 1 5.6942 0.2241 1.1898 37 1 7.9335 0.8216 1.9667 38 1 8.6513 -0.2537 7.3913 39 1 7.3891 -1.7150 5.4092 40 1 5.1498 -2.2890 4.6147 41 1 1.8933 1.0276 2.4980 42 1 0.4395 0.0001 2.4982 43 1 1.8925 -0.5136 3.3884 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225268074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:59 Heat of formation + Delta-G solvation = -52.526325 kcal Electronic energy + Delta-G solvation = -21349.574051 eV Core-core repulsion = 18358.248481 eV Total energy + Delta-G solvation = -2991.325570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.83321 -37.89768 -36.04845 -33.28136 -33.02320 -31.21019 -29.56933 -28.91575 -27.06020 -25.58366 -24.69965 -22.21000 -21.04386 -20.82070 -20.20337 -19.56446 -17.30016 -16.87814 -15.30226 -15.08054 -14.85775 -14.64607 -14.46871 -13.99149 -13.76511 -13.25537 -13.10045 -12.80808 -12.43727 -12.14144 -12.11910 -11.89268 -11.83195 -11.72851 -11.60104 -11.15943 -11.11179 -11.02062 -10.81864 -10.78664 -10.63509 -10.31616 -10.28520 -10.02403 -9.77938 -9.54678 -9.24061 -8.99407 -7.59152 -6.93622 -6.65704 -4.22188 2.83211 2.99672 3.10030 3.12859 3.25202 3.98204 4.06321 4.64694 4.69002 4.74496 4.91801 5.10984 5.15157 5.36050 5.42446 5.51447 5.54563 5.57573 5.69703 5.70530 5.75322 5.80322 5.94604 5.96570 6.05075 6.12171 6.13935 6.16949 6.24530 6.26339 6.33818 6.42734 6.51087 6.58207 6.81100 7.03144 7.16779 7.24913 7.53458 7.61155 7.85316 8.04947 8.25828 8.52817 8.71619 8.94846 9.04123 10.28613 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.039215 B = 0.003779 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.845549 B = 7407.871524 C = 7783.494363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.070 0.930 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.145 4.145 7 C 0.099 3.901 8 H 0.064 0.936 9 O -0.320 6.320 10 C 0.000 4.000 11 C -0.170 4.170 12 C -0.196 4.196 13 C 0.086 3.914 14 C -0.465 4.465 15 H 0.074 0.926 16 C 0.074 3.926 17 N -0.805 5.805 18 Si 0.908 3.092 19 H -0.279 1.279 20 H -0.265 1.265 21 H -0.267 1.267 22 C -0.130 4.130 23 C -0.125 4.125 24 C -0.078 4.078 25 H 0.074 0.926 26 C -0.146 4.146 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.279 0.721 39 H 0.126 0.874 40 H 0.096 0.904 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.285 -0.293 -9.909 15.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.089 0.911 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.182 4.182 7 C 0.041 3.959 8 H 0.082 0.918 9 O -0.236 6.236 10 C -0.043 4.043 11 C -0.189 4.189 12 C -0.216 4.216 13 C 0.084 3.916 14 C -0.496 4.496 15 H 0.093 0.907 16 C -0.142 4.142 17 N -0.431 5.431 18 Si 0.733 3.267 19 H -0.204 1.204 20 H -0.190 1.190 21 H -0.192 1.192 22 C -0.150 4.150 23 C -0.143 4.143 24 C -0.097 4.097 25 H 0.092 0.908 26 C -0.204 4.204 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.144 0.856 40 H 0.114 0.886 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.447 -0.429 -9.560 14.920 hybrid contribution 0.964 0.273 0.192 1.020 sum -10.483 -0.156 -9.368 14.060 Atomic orbital electron populations 1.21863 0.95117 1.01790 1.01617 1.21139 0.95505 0.99621 0.94123 0.91139 1.21627 0.95655 1.00679 0.97271 1.21487 0.95431 1.00817 0.97690 1.22103 1.01749 1.00098 0.94283 1.22080 0.93115 0.96043 0.84620 0.91813 1.85862 1.31079 1.63328 1.43357 1.18607 0.85025 1.03822 0.96832 1.20447 0.96460 1.02159 0.99847 1.20595 0.95591 1.04676 1.00714 1.17580 0.93257 0.89906 0.90848 1.19422 0.97000 1.40850 0.92283 0.90744 1.25850 0.99003 0.92583 0.96776 1.69807 1.33457 1.36977 1.02891 0.86373 0.82798 0.79797 0.77726 1.20428 1.18972 1.19167 1.21003 0.93368 0.99132 1.01449 1.19856 0.97117 1.02792 0.94576 1.21159 0.93502 1.00257 0.94785 0.90751 1.21824 1.00091 1.00390 0.98060 0.92234 0.92888 0.92740 0.91939 0.92119 0.91899 0.92012 0.90993 0.91516 0.88605 0.88887 0.90997 0.85620 0.88625 0.92998 0.92802 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.84 37.16 0.33 -1.00 16 2 C -0.09 -0.92 2.25 -90.62 -0.20 -1.12 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.11 -1.17 5.20 -26.73 -0.14 -1.30 16 5 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 6 C -0.14 -2.11 5.17 -26.73 -0.14 -2.24 16 7 C 0.10 1.60 1.55 -26.73 -0.04 1.56 16 8 H 0.06 1.09 6.29 -51.93 -0.33 0.77 16 9 O -0.32 -6.53 9.11 -18.72 -0.17 -6.70 16 10 C 0.00 0.01 6.62 -38.78 -0.26 -0.25 16 11 C -0.17 -3.88 8.15 -39.83 -0.32 -4.21 16 12 C -0.20 -4.88 9.74 -39.25 -0.38 -5.26 16 13 C 0.09 2.33 5.57 -106.80 -0.59 1.74 16 14 C -0.47 -12.52 9.05 -37.83 -0.34 -12.86 16 15 H 0.07 1.92 7.89 -52.48 -0.41 1.51 16 16 C 0.07 1.88 5.19 -17.34 -0.09 1.79 16 17 N -0.80 -21.12 10.87 55.54 0.60 -20.52 16 18 Si 0.91 18.98 29.58 -169.99 -5.03 13.95 16 19 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 C -0.13 -3.44 8.63 -39.25 -0.34 -3.78 16 23 C -0.12 -3.05 9.92 -39.83 -0.40 -3.44 16 24 C -0.08 -1.04 1.99 -90.62 -0.18 -1.22 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 C -0.15 -1.96 8.69 37.16 0.32 -1.63 16 27 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.17 6.89 -51.93 -0.36 0.81 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.10 1.93 5.39 -52.49 -0.28 1.65 16 37 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 38 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 39 H 0.13 3.41 6.16 -52.49 -0.32 3.08 16 40 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.60 6.43 -51.93 -0.33 0.26 16 43 H 0.06 1.00 7.68 -51.93 -0.40 0.60 16 LS Contribution 332.36 15.07 5.01 5.01 Total: -1.00 -27.58 332.36 -9.50 -37.08 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.98 Total: 5.91 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: -2.93 Total: -34.73 kcal Atomic # 7 Polarization: -21.12 SS G_CDS: 0.60 Total: -20.52 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.17 Total: -6.70 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.58 -9.50 -37.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225268074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.442 kcal (2) G-P(sol) polarization free energy of solvation -27.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds