Wall clock time and date at job start Mon Mar 30 2020 02:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47303 * 2 1 4 4 C 1.53001 * 109.47135 * 239.99881 * 2 1 3 5 5 C 1.52999 * 109.47135 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.47412 * 60.00113 * 5 4 2 7 7 C 1.53003 * 109.47245 * 300.00047 * 6 5 4 8 8 H 1.08998 * 109.46936 * 299.99667 * 7 6 5 9 9 O 1.42902 * 109.47070 * 179.97438 * 7 6 5 10 10 C 1.35673 * 116.99452 * 84.60184 * 9 7 6 11 11 C 1.39308 * 119.82065 * 354.94841 * 10 9 7 12 12 C 1.36439 * 120.18492 * 180.02562 * 11 10 9 13 13 C 1.40832 * 119.81144 * 359.97438 * 12 11 10 14 14 C 1.41220 * 120.17872 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99967 * 334.07163 * 14 13 12 16 16 C 1.39890 * 120.00006 * 154.07164 * 14 13 12 17 17 N 1.30878 * 119.99970 * 345.41957 * 16 14 13 18 18 Si 1.86805 * 120.00115 * 165.41458 * 16 14 13 19 19 H 1.48496 * 109.47028 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.46808 * 300.00311 * 18 16 14 21 21 H 1.48498 * 109.46534 * 59.99888 * 18 16 14 22 22 C 1.40828 * 119.64327 * 0.25404 * 13 12 11 23 23 C 1.36434 * 119.81186 * 359.48258 * 22 13 12 24 24 C 1.52999 * 109.46954 * 59.99672 * 7 6 5 25 25 H 1.08998 * 109.47303 * 60.00220 * 24 7 6 26 26 C 1.53001 * 109.47135 * 180.02562 * 24 7 6 27 27 H 1.09002 * 109.46607 * 299.99673 * 1 2 3 28 28 H 1.08994 * 109.47158 * 60.00009 * 1 2 3 29 29 H 1.09002 * 109.47010 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47122 * 300.00230 * 4 2 1 31 31 H 1.09003 * 109.46934 * 60.00020 * 4 2 1 32 32 H 1.09001 * 109.47321 * 180.02562 * 5 4 2 33 33 H 1.08998 * 109.47303 * 300.00119 * 5 4 2 34 34 H 1.09000 * 109.47699 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47359 * 59.99814 * 6 5 4 36 36 H 1.07994 * 119.90835 * 0.02562 * 11 10 9 37 37 H 1.08007 * 120.09527 * 179.97438 * 12 11 10 38 38 H 0.97004 * 120.00221 * 180.02562 * 17 16 14 39 39 H 1.07997 * 120.09988 * 179.74682 * 22 13 12 40 40 H 1.08004 * 119.91633 * 180.25642 * 23 22 13 41 41 H 1.08998 * 109.47122 * 59.99770 * 26 24 7 42 42 H 1.09005 * 109.47352 * 180.02562 * 26 24 7 43 43 H 1.09003 * 109.46934 * 299.99980 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5695 -0.7222 1.2496 8 1 3.9333 0.3053 1.2498 9 8 4.0450 -1.3966 2.4163 10 6 5.2866 -1.0688 2.8540 11 6 6.0741 -0.1921 2.1111 12 6 7.3241 0.1421 2.5440 13 6 7.8173 -0.4014 3.7460 14 6 9.1101 -0.0611 4.2011 15 1 9.8676 0.2461 3.4952 16 6 9.4097 -0.1221 5.5662 17 7 8.4437 -0.2118 6.4447 18 14 11.1883 -0.0756 6.1352 19 1 11.2361 -0.1545 7.6173 20 1 11.9239 -1.2276 5.5547 21 1 11.8187 1.1916 5.6857 22 6 7.0167 -1.2907 4.4886 23 6 5.7669 -1.6104 4.0444 24 6 2.0396 -0.7216 1.2492 25 1 1.6758 -1.7491 1.2490 26 6 1.5295 0.0001 2.4982 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6766 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.9334 -1.2353 -2.1391 33 1 3.9337 0.3057 -1.2487 34 1 5.1695 -1.4442 0.0003 35 1 3.7158 -2.4710 0.0001 36 1 5.6942 0.2241 1.1898 37 1 7.9335 0.8216 1.9667 38 1 8.6513 -0.2537 7.3913 39 1 7.3891 -1.7150 5.4092 40 1 5.1498 -2.2890 4.6147 41 1 1.8933 1.0276 2.4980 42 1 0.4395 0.0001 2.4982 43 1 1.8925 -0.5136 3.3884 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225268074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:58 Heat of formation + Delta-G solvation = -64.366649 kcal Electronic energy + Delta-G solvation = -21350.087486 eV Core-core repulsion = 18358.248481 eV Total energy + Delta-G solvation = -2991.839005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.21541 -39.42979 -37.69596 -35.17387 -34.02790 -32.44558 -31.38568 -30.81045 -28.08145 -26.92426 -26.25710 -23.70017 -22.72240 -21.97897 -21.73229 -20.69537 -19.22533 -18.53245 -17.05217 -16.61643 -16.11574 -15.83322 -15.57179 -15.44020 -15.25746 -14.76474 -14.40032 -14.25608 -13.99746 -13.67845 -13.52537 -13.32444 -13.05814 -12.83873 -12.78185 -12.72741 -12.55615 -12.45860 -12.32052 -11.93889 -11.77869 -11.75782 -11.56589 -11.38455 -11.19217 -11.08159 -10.93625 -10.67513 -9.55367 -8.86345 -8.56500 -6.23313 0.96258 1.03214 1.39337 1.50718 1.54170 2.23310 2.60056 2.76056 3.65996 3.70283 3.75517 3.92044 4.10859 4.13732 4.20081 4.33453 4.35263 4.43260 4.50553 4.53815 4.67208 4.74838 4.81034 4.87279 4.96729 4.99200 5.05506 5.06832 5.13982 5.18361 5.21009 5.23340 5.28117 5.31333 5.35764 5.36889 5.53551 5.58647 5.62206 5.68481 5.91009 6.06224 6.27751 6.58646 6.83951 6.96131 7.12657 8.39722 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.039215 B = 0.003779 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.845549 B = 7407.871524 C = 7783.494363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 H 0.069 0.931 4 C -0.111 4.111 5 C -0.113 4.113 6 C -0.141 4.141 7 C 0.090 3.910 8 H 0.055 0.945 9 O -0.329 6.329 10 C 0.011 3.989 11 C -0.167 4.167 12 C -0.206 4.206 13 C 0.054 3.946 14 C -0.502 4.502 15 H 0.075 0.925 16 C 0.032 3.968 17 N -0.836 5.836 18 Si 0.984 3.016 19 H -0.269 1.269 20 H -0.261 1.261 21 H -0.260 1.260 22 C -0.148 4.148 23 C -0.138 4.138 24 C -0.074 4.074 25 H 0.074 0.926 26 C -0.145 4.145 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.286 0.714 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.047 0.953 42 H 0.079 0.921 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.362 0.096 -11.523 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.150 4.150 6 C -0.179 4.179 7 C 0.033 3.967 8 H 0.073 0.927 9 O -0.245 6.245 10 C -0.033 4.033 11 C -0.185 4.185 12 C -0.226 4.226 13 C 0.052 3.948 14 C -0.532 4.532 15 H 0.093 0.907 16 C -0.181 4.181 17 N -0.464 5.464 18 Si 0.804 3.196 19 H -0.193 1.193 20 H -0.186 1.186 21 H -0.184 1.184 22 C -0.167 4.167 23 C -0.157 4.157 24 C -0.093 4.093 25 H 0.092 0.908 26 C -0.202 4.202 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.141 0.859 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.551 -0.040 -11.194 16.817 hybrid contribution 1.141 0.140 0.615 1.304 sum -11.410 0.100 -10.578 15.559 Atomic orbital electron populations 1.21841 0.93380 1.02365 1.02488 1.21134 0.96866 0.99111 0.92893 0.91299 1.21628 0.94300 1.01212 0.97724 1.21487 0.96648 1.00496 0.96381 1.22067 1.00405 1.00419 0.95035 1.22472 0.95205 0.95274 0.83735 0.92746 1.85863 1.29510 1.63892 1.45235 1.18663 0.85994 1.02544 0.96081 1.20677 0.95632 1.01599 1.00604 1.20823 0.96553 1.04864 1.00372 1.17923 0.94030 0.90801 0.92052 1.19691 0.97338 1.42730 0.93421 0.90706 1.26726 1.03576 0.91519 0.96293 1.69874 1.35692 1.37335 1.03454 0.85235 0.76806 0.79949 0.77574 1.19309 1.18560 1.18439 1.20924 0.94385 1.00018 1.01420 1.20026 0.96831 1.03306 0.95524 1.21196 0.91048 1.00744 0.96272 0.90755 1.21817 1.01732 0.99687 0.97002 0.92184 0.91280 0.92313 0.91481 0.89888 0.90400 0.91952 0.93120 0.91512 0.85898 0.87868 0.90321 0.87124 0.87480 0.93409 0.90262 0.94269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.84 71.98 0.64 -1.46 16 2 C -0.08 -1.52 2.25 -10.79 -0.02 -1.54 16 3 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.11 -1.87 5.20 30.59 0.16 -1.71 16 5 C -0.11 -2.30 5.92 30.59 0.18 -2.11 16 6 C -0.14 -3.94 5.17 30.59 0.16 -3.78 16 7 C 0.09 2.82 1.55 30.59 0.05 2.86 16 8 H 0.05 1.82 6.29 -2.39 -0.02 1.80 16 9 O -0.33 -13.39 9.11 -89.90 -0.82 -14.21 16 10 C 0.01 0.52 6.62 22.79 0.15 0.68 16 11 C -0.17 -7.62 8.15 22.11 0.18 -7.44 16 12 C -0.21 -10.46 9.74 22.48 0.22 -10.24 16 13 C 0.05 3.02 5.57 -21.28 -0.12 2.90 16 14 C -0.50 -27.81 9.05 23.40 0.21 -27.60 16 15 H 0.07 3.97 7.89 -2.91 -0.02 3.95 16 16 C 0.03 1.65 5.19 85.24 0.44 2.10 16 17 N -0.84 -45.08 10.87 21.82 0.24 -44.84 16 18 Si 0.98 39.20 29.58 68.60 2.03 41.23 16 19 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 22 C -0.15 -8.14 8.63 22.48 0.19 -7.95 16 23 C -0.14 -6.95 9.92 22.11 0.22 -6.73 16 24 C -0.07 -1.84 1.99 -10.79 -0.02 -1.87 16 25 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 26 C -0.15 -3.71 8.69 71.98 0.63 -3.09 16 27 H 0.06 0.87 6.43 -2.39 -0.02 0.86 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.05 1.61 6.89 -2.39 -0.02 1.60 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.12 4.86 5.39 -2.91 -0.02 4.84 16 37 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 38 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 39 H 0.11 6.32 6.16 -2.91 -0.02 6.30 16 40 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 41 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.08 1.60 6.43 -2.38 -0.02 1.58 16 43 H 0.04 1.19 7.68 -2.39 -0.02 1.17 16 Total: -1.00 -60.93 332.36 5.68 -55.25 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.97 Total: 29.55 kcal Atomic # 6 Polarization: -70.24 SS G_CDS: 3.26 Total: -66.98 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.24 Total: -44.84 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.82 Total: -14.21 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -60.93 5.68 -55.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225268074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.119 kcal (2) G-P(sol) polarization free energy of solvation -60.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds