Wall clock time and date at job start Mon Mar 30 2020 02:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08997 * 109.47064 * 2 1 4 4 C 1.52995 * 109.46740 * 240.00561 * 2 1 3 5 5 C 1.52998 * 109.47375 * 299.99711 * 4 2 1 6 6 C 1.53001 * 109.47141 * 300.00367 * 5 4 2 7 7 C 1.52997 * 109.47016 * 60.00201 * 6 5 4 8 8 H 1.08997 * 109.47666 * 59.99654 * 7 6 5 9 9 O 1.42896 * 109.47339 * 180.02562 * 7 6 5 10 10 C 1.35680 * 116.99697 * 275.12448 * 9 7 6 11 11 C 1.39307 * 119.81857 * 5.10924 * 10 9 7 12 12 C 1.36434 * 120.18709 * 180.02562 * 11 10 9 13 13 C 1.40838 * 119.81147 * 359.97438 * 12 11 10 14 14 C 1.41215 * 120.17893 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99951 * 33.84108 * 14 13 12 16 16 C 1.39888 * 119.99801 * 213.83544 * 14 13 12 17 17 N 1.30886 * 120.00131 * 0.40344 * 16 14 13 18 18 Si 1.86806 * 119.99920 * 180.40912 * 16 14 13 19 19 H 1.48496 * 109.46942 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47173 * 119.99871 * 18 16 14 21 21 H 1.48500 * 109.46810 * 240.00149 * 18 16 14 22 22 C 1.40829 * 119.63886 * 0.02562 * 13 12 11 23 23 C 1.36438 * 119.81484 * 359.97438 * 22 13 12 24 24 C 1.52990 * 109.46900 * 120.00456 * 2 1 3 25 25 H 1.09009 * 109.47220 * 179.97438 * 24 2 1 26 26 C 1.52995 * 109.47509 * 299.99634 * 24 2 1 27 27 H 1.08998 * 109.46682 * 299.99633 * 1 2 3 28 28 H 1.09000 * 109.46602 * 59.99428 * 1 2 3 29 29 H 1.09001 * 109.46804 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47682 * 60.00116 * 4 2 1 31 31 H 1.09004 * 109.47325 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.47173 * 60.00082 * 5 4 2 33 33 H 1.08998 * 109.47563 * 180.02562 * 5 4 2 34 34 H 1.08997 * 109.47185 * 299.99560 * 6 5 4 35 35 H 1.09008 * 109.47070 * 179.97438 * 6 5 4 36 36 H 1.08007 * 119.90718 * 0.27235 * 11 10 9 37 37 H 1.08000 * 120.09717 * 180.02562 * 12 11 10 38 38 H 0.97000 * 119.99923 * 179.97438 * 17 16 14 39 39 H 1.08007 * 120.09526 * 179.97438 * 22 13 12 40 40 H 1.08004 * 119.90740 * 180.02562 * 23 22 13 41 41 H 1.09000 * 109.47564 * 179.97438 * 26 24 2 42 42 H 1.08998 * 109.47187 * 300.00271 * 26 24 2 43 43 H 1.09001 * 109.46903 * 60.00641 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5301 -2.1636 -1.2494 6 6 2.0401 -2.8850 -0.0003 7 6 1.5300 -2.1639 1.2490 8 1 0.4401 -2.1639 1.2490 9 8 2.0068 -2.8372 2.4157 10 6 1.2804 -3.8950 2.8565 11 6 0.1888 -4.3425 2.1157 12 6 -0.5472 -5.4052 2.5522 13 6 -0.2003 -6.0504 3.7550 14 6 -0.9570 -7.1507 4.2143 15 1 -1.3987 -7.8357 3.5057 16 6 -1.1344 -7.3533 5.5870 17 7 -0.6057 -6.5187 6.4455 18 14 -2.1259 -8.8152 6.1949 19 1 -2.6130 -9.6006 5.0325 20 1 -1.2674 -9.6748 7.0489 21 1 -3.2858 -8.3319 6.9863 22 6 0.9048 -5.5916 4.4978 23 6 1.6304 -4.5276 4.0473 24 6 2.0400 -0.7213 1.2491 25 1 3.1301 -0.7217 1.2489 26 6 1.5301 -0.0002 2.4984 27 1 -0.3632 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6767 -0.2073 -2.1392 31 1 3.1301 -0.7216 -1.2492 32 1 0.4400 -2.1637 -1.2494 33 1 1.8937 -2.6775 -2.1392 34 1 3.1301 -2.8850 -0.0003 35 1 1.6764 -3.9126 -0.0001 36 1 -0.0733 -3.8493 1.1913 37 1 -1.3930 -5.7511 1.9765 38 1 -0.7290 -6.6590 7.3973 39 1 1.1772 -6.0807 5.4215 40 1 2.4784 -4.1748 4.6156 41 1 1.8931 -0.5144 3.3884 42 1 1.8935 1.0274 2.4985 43 1 0.4401 -0.0002 2.4985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225268076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:06 Heat of formation + Delta-G solvation = -47.783371 kcal Electronic energy + Delta-G solvation = -21573.543161 eV Core-core repulsion = 18582.423261 eV Total energy + Delta-G solvation = -2991.119900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.05025 -37.98566 -36.05120 -33.22058 -32.73921 -30.94164 -29.54599 -28.88152 -27.35215 -25.69637 -24.70969 -22.44516 -21.48385 -20.75092 -20.33971 -18.43018 -17.25387 -17.10324 -15.46646 -15.15620 -15.09999 -14.50280 -14.05712 -13.94470 -13.80500 -13.73676 -12.82051 -12.73034 -12.49843 -12.22010 -12.10774 -12.02193 -11.88582 -11.61614 -11.49079 -11.32239 -11.08479 -11.02169 -10.81710 -10.71587 -10.58485 -10.31794 -10.24508 -9.85000 -9.70957 -9.55877 -9.22195 -9.05119 -7.60100 -6.83363 -6.56485 -4.25292 2.82228 2.98207 3.12933 3.17502 3.23308 4.02023 4.07561 4.65721 4.70290 4.75530 4.89793 5.14453 5.23226 5.33087 5.39519 5.44556 5.52622 5.61330 5.65317 5.68973 5.79952 5.86199 5.94044 6.00518 6.06599 6.11311 6.12554 6.21847 6.23782 6.25919 6.30281 6.41839 6.49519 6.61041 6.80306 7.02228 7.17488 7.27720 7.54338 7.62296 7.82787 8.07417 8.28208 8.53111 8.72483 8.98591 9.04312 10.37879 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.034815 B = 0.003982 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.052969 B = 7029.301353 C = 7261.424160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.083 4.083 3 H 0.072 0.928 4 C -0.116 4.116 5 C -0.118 4.118 6 C -0.145 4.145 7 C 0.097 3.903 8 H 0.069 0.931 9 O -0.321 6.321 10 C 0.012 3.988 11 C -0.178 4.178 12 C -0.185 4.185 13 C 0.081 3.919 14 C -0.467 4.467 15 H 0.073 0.927 16 C 0.070 3.930 17 N -0.819 5.819 18 Si 0.912 3.088 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.276 1.276 22 C -0.118 4.118 23 C -0.131 4.131 24 C -0.080 4.080 25 H 0.074 0.926 26 C -0.147 4.147 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.276 0.724 39 H 0.131 0.869 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.300 10.346 -10.165 14.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.101 4.101 3 H 0.090 0.910 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.182 4.182 7 C 0.040 3.960 8 H 0.087 0.913 9 O -0.237 6.237 10 C -0.032 4.032 11 C -0.197 4.197 12 C -0.205 4.205 13 C 0.079 3.921 14 C -0.498 4.498 15 H 0.092 0.908 16 C -0.144 4.144 17 N -0.447 5.447 18 Si 0.737 3.263 19 H -0.187 1.187 20 H -0.200 1.200 21 H -0.201 1.201 22 C -0.138 4.138 23 C -0.150 4.150 24 C -0.098 4.098 25 H 0.092 0.908 26 C -0.204 4.204 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.149 0.851 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.476 10.447 -9.829 14.760 hybrid contribution -0.710 -0.669 0.222 1.000 sum 2.766 9.779 -9.607 13.985 Atomic orbital electron populations 1.22037 0.95332 1.02424 1.01566 1.21101 0.96061 0.98895 0.94069 0.91002 1.21599 1.00589 0.95788 0.97324 1.21534 1.01056 0.95374 0.97614 1.22105 1.01580 1.00235 0.94329 1.22145 0.98583 0.90788 0.84501 0.91336 1.85869 1.51079 1.43328 1.43392 1.18676 0.95804 0.92115 0.96574 1.20457 0.98410 1.00822 1.00000 1.20703 1.00933 0.98242 1.00602 1.17621 0.90971 0.92706 0.90819 1.19439 1.29176 1.09500 0.91716 0.90838 1.25811 0.95144 0.96549 0.96874 1.69771 1.37886 1.33890 1.03166 0.86206 0.79629 0.81242 0.79211 1.18731 1.20034 1.20134 1.21158 0.94438 0.96932 1.01224 1.19914 1.01579 0.98873 0.94655 1.21143 1.00719 0.93110 0.94857 0.90787 1.21822 1.01245 0.99289 0.98037 0.92236 0.92938 0.91970 0.92091 0.91975 0.91665 0.92001 0.91528 0.91030 0.88583 0.88784 0.91320 0.85120 0.88540 0.91638 0.93167 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.15 37.16 0.30 -1.36 16 2 C -0.08 -0.88 2.72 -90.62 -0.25 -1.13 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.12 -1.16 5.45 -26.73 -0.15 -1.30 16 5 C -0.12 -1.35 5.65 -26.73 -0.15 -1.50 16 6 C -0.14 -2.09 5.18 -26.73 -0.14 -2.23 16 7 C 0.10 1.55 1.27 -26.73 -0.03 1.51 16 8 H 0.07 1.15 4.57 -51.93 -0.24 0.91 16 9 O -0.32 -6.48 9.11 -18.74 -0.17 -6.65 16 10 C 0.01 0.27 6.63 -38.78 -0.26 0.01 16 11 C -0.18 -4.02 8.16 -39.83 -0.33 -4.34 16 12 C -0.19 -4.57 9.74 -39.25 -0.38 -4.95 16 13 C 0.08 2.18 5.54 -106.80 -0.59 1.59 16 14 C -0.47 -12.59 9.04 -37.83 -0.34 -12.94 16 15 H 0.07 1.91 7.85 -52.48 -0.41 1.50 16 16 C 0.07 1.80 5.38 -17.34 -0.09 1.70 16 17 N -0.82 -21.69 10.70 55.54 0.59 -21.09 16 18 Si 0.91 19.26 29.56 -169.99 -5.02 14.23 16 19 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 C -0.12 -3.11 8.59 -39.25 -0.34 -3.45 16 23 C -0.13 -3.20 9.92 -39.83 -0.40 -3.59 16 24 C -0.08 -1.05 2.23 -90.62 -0.20 -1.25 16 25 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 26 C -0.15 -1.95 8.70 37.16 0.32 -1.63 16 27 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.73 4.81 -51.93 -0.25 0.48 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.15 6.91 -51.92 -0.36 0.80 16 36 H 0.10 1.91 5.40 -52.48 -0.28 1.62 16 37 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 38 H 0.28 6.69 8.30 -40.82 -0.34 6.36 16 39 H 0.13 3.56 6.23 -52.48 -0.33 3.23 16 40 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 41 H 0.06 1.00 7.68 -51.93 -0.40 0.60 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 LS Contribution 325.31 15.07 4.90 4.90 Total: -1.00 -27.68 325.31 -9.35 -37.02 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.63 Total: 6.44 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: -3.02 Total: -34.85 kcal Atomic # 7 Polarization: -21.69 SS G_CDS: 0.59 Total: -21.09 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.17 Total: -6.65 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.68 -9.35 -37.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225268076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.762 kcal (2) G-P(sol) polarization free energy of solvation -27.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds